CB293885

Overview
NameCB293885
Unique NameCB293885
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length735
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CB293885_ssr195 microsatellite CB293885_ssr195:195..206. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig13771 contig Csv1_Contig13771:11..745. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB293885 vs. ExPASy Swiss-Prot
Match: VPE_CITSI (Vacuolar-processing enzyme OS=Citrus sinensis PE=2 SV=1)

HSP 1 Score: 471.085 bits (1211), Expect = 2.736e-132
Identity = 228/230 (99.13%), Postives = 229/230 (99.57%), Query Frame = 3
Query:   42 MTRLASGVLITLLVALAGIADGSRDIAGDILKLPSEAYRFFHNGGGGAKVNDDDDSVGTRWAVLLAGSNGFWNYRHQADICHAYQLLRKGGLKDENIIVFMYDDIAFNEENPRPGVIINHPHGDDVYKGVPKDYTGEDVTVENFFAVVLGNKTALTGGSGKVVDSGPNDHIFIFYSDHGGPGVLGMPTTRYIYADELIDVLKKKHASGNYKSLVFYLEACESGSIFEGLL 731
            MTRLASGVLITLLVALAGIADGSRDIAGDILKLPSEAYRFFHNGGGGAKVNDDDDSVGTRWAVLLAGSNGFWNYRHQADICHAYQLLRKGGLKDENIIVFMYDDIAFNEENPRPGVIINHPHGDDVYKGVPKDYTGEDVTVE FFAVVLGNKTALTGGSGKVVDSGPNDHIFIFYSDHGGPGVLGMPT+RYIYADELIDVLKKKHASGNYKSLVFYLEACESGSIFEGLL
Sbjct:    1 MTRLASGVLITLLVALAGIADGSRDIAGDILKLPSEAYRFFHNGGGGAKVNDDDDSVGTRWAVLLAGSNGFWNYRHQADICHAYQLLRKGGLKDENIIVFMYDDIAFNEENPRPGVIINHPHGDDVYKGVPKDYTGEDVTVEKFFAVVLGNKTALTGGSGKVVDSGPNDHIFIFYSDHGGPGVLGMPTSRYIYADELIDVLKKKHASGNYKSLVFYLEACESGSIFEGLL 230          
BLAST of CB293885 vs. ExPASy Swiss-Prot
Match: VPEG_ARATH (Vacuolar-processing enzyme gamma-isozyme OS=Arabidopsis thaliana GN=At4g32940 PE=2 SV=2)

HSP 1 Score: 351.673 bits (901), Expect = 2.419e-96
Identity = 172/233 (73.82%), Postives = 197/233 (84.55%), Query Frame = 3
Query:   39 TMTRLASGV-LITLLVALAGIADGSRDIAGDILKLPSEAYRFFHNGGGGAKVNDDDDSVGTRWAVLLAGSNGFWNYRHQADICHAYQLLRKGGLKDENIIVFMYDDIAFNEENPRPGVIINHPHGDDVYKGVPKDYTGEDVTVENFFAVVLGNKTALTGGSGKVVDSGPNDHIFIFYSDHGGPGVLGMPTTRYIYADELIDVLKKKHASGNYKSLVFYLEACESGSIFEGLLP 734
            TMTR++ GV L  LLV+L  ++  +R    D++KLPS+A RFF         NDDD + GTRWAVL+AGS+G+WNYRHQADICHAYQLLRKGGLK+ENI+VFMYDDIA N ENPRPG IIN PHG DVY+GVPKDYTG+DV V+N FAV+LG+KTA+ GGSGKVVDSGPNDHIFIFYSDHGGPGVLGMPT+ Y+YA++L DVLKKKHA G YKSLVFYLEACESGSIFEGLLP
Sbjct:    4 TMTRVSVGVVLFVLLVSLVAVS-AARSGPDDVIKLPSQASRFFRPAE-----NDDDSNSGTRWAVLVAGSSGYWNYRHQADICHAYQLLRKGGLKEENIVVFMYDDIANNYENPRPGTIINSPHGKDVYQGVPKDYTGDDVNVDNLFAVILGDKTAVKGGSGKVVDSGPNDHIFIFYSDHGGPGVLGMPTSPYLYANDLNDVLKKKHALGTYKSLVFYLEACESGSIFEGLLP 230          
BLAST of CB293885 vs. ExPASy Swiss-Prot
Match: VPE_VICSA (Vacuolar-processing enzyme OS=Vicia sativa PE=1 SV=1)

HSP 1 Score: 343.199 bits (879), Expect = 8.603e-94
Identity = 161/230 (70.00%), Postives = 189/230 (82.17%), Query Frame = 3
Query:   45 TRLASGVLITLLVALAGIADGSRDIAGDILKLPSEAYRFFHNGGGGAKVNDDDDSVGTRWAVLLAGSNGFWNYRHQADICHAYQLLRKGGLKDENIIVFMYDDIAFNEENPRPGVIINHPHGDDVYKGVPKDYTGEDVTVENFFAVVLGNKTALTGGSGKVVDSGPNDHIFIFYSDHGGPGVLGMPTTRYIYADELIDVLKKKHASGNYKSLVFYLEACESGSIFEGLLP 734
            ++L++ +  T++V    +    RD+ GD L+LPSE  RFF       +  +DDD  GTRWA+LLAGSNG+WNYRHQ+D+CHAYQLLRKGG K+ENIIVFMYDDIA NEENPRPGVIIN P GDDVY GVPKDYTG +V  +NF+A +LGNK+ALTGGSGKVVDSGPNDHIF++Y+DHGGPGVLGMP   Y+YA +L +VLKKKHASG YKSLVFYLEACESGSIFEGLLP
Sbjct:    4 SQLSTLLFFTIVVTFLTVVSSGRDLPGDYLRLPSETSRFFR------EPKNDDDFEGTRWAILLAGSNGYWNYRHQSDVCHAYQLLRKGGSKEENIIVFMYDDIASNEENPRPGVIINKPDGDDVYAGVPKDYTGAEVHADNFYAALLGNKSALTGGSGKVVDSGPNDHIFVYYTDHGGPGVLGMPVGPYLYASDLNEVLKKKHASGTYKSLVFYLEACESGSIFEGLLP 227          
BLAST of CB293885 vs. ExPASy Swiss-Prot
Match: VPE1_PHAVU (Vacuolar-processing enzyme OS=Phaseolus vulgaris PE=1 SV=1)

HSP 1 Score: 333.183 bits (853), Expect = 8.903e-91
Identity = 162/230 (70.43%), Postives = 184/230 (80.00%), Query Frame = 3
Query:   45 TRLASGVLITLLVALAGIADGSRDIAGDILKLPSEAYRFFHNGGGGAKVNDDDDSVGTRWAVLLAGSNGFWNYRHQADICHAYQLLRKGGLKDENIIVFMYDDIAFNEENPRPGVIINHPHGDDVYKGVPKDYTGEDVTVENFFAVVLGNKTALTGGSGKVVDSGPNDHIFIFYSDHGGPGVLGMPTTRYIYADELIDVLKKKHASGNYKSLVFYLEACESGSIFEGLLP 734
            T   + +L  LL+ L  +    RD+ GD L+LPS++       G G  V+      GTRWA+L AGS+G+WNYRHQADICHAYQLLRKGGLKDENIIVFMYDDIAFN ENPR GVIIN P+GD+VYKGVPKDYTGEDVT  NF+A +LG+K+ LTGGSGKVV+SGPNDHIFIFYSDHGGPGVLG P   YIYA +L +VLKKKHASG YK+LVFYLEACESGSIFEGLLP
Sbjct:    4 TTATTSLLALLLLFLVALVSAGRDLVGDFLRLPSDS-------GNGDNVH------GTRWAILFAGSSGYWNYRHQADICHAYQLLRKGGLKDENIIVFMYDDIAFNSENPRRGVIINSPNGDEVYKGVPKDYTGEDVTAHNFYAALLGDKSKLTGGSGKVVNSGPNDHIFIFYSDHGGPGVLGSPAGPYIYASDLNEVLKKKHASGTYKNLVFYLEACESGSIFEGLLP 220          
BLAST of CB293885 vs. ExPASy Swiss-Prot
Match: VPEA_ARATH (Vacuolar-processing enzyme alpha-isozyme OS=Arabidopsis thaliana GN=At2g25940 PE=2 SV=2)

HSP 1 Score: 327.02 bits (837), Expect = 6.380e-89
Identity = 154/206 (74.76%), Postives = 181/206 (87.86%), Query Frame = 3
Query:  117 IAGDILKLPSEAYRFFHNGGGGAKVNDDDDSVGTRWAVLLAGSNGFWNYRHQADICHAYQLLRKGGLKDENIIVFMYDDIAFNEENPRPGVIINHPHGDDVYKGVPKDYTGEDVTVENFFAVVLGNKTALTGGSGKVVDSGPNDHIFIFYSDHGGPGVLGMPTTRYIYADELIDVLKKKHASGNYKSLVFYLEACESGSIFEGLLP 734
            ++GD++KLPS A +FF          +DDDS  T+WAVL+AGS+G+WNYRHQAD+CHAYQLL+KGG+K+ENI+VFMYDDIA NEENPRPGVIIN P+G+DVY GVPKDYTG++V V+N  AV+LGNKTAL GGSGKVVDSGPNDHIFI+YSDHGGPGVLGMPT+  +YA++L DVLKKK+ASG YKSLVFYLEACESGSIFEGLLP
Sbjct:   18 VSGDVIKLPSLASKFFR------PTENDDDS--TKWAVLVAGSSGYWNYRHQADVCHAYQLLKKGGVKEENIVVFMYDDIAKNEENPRPGVIINSPNGEDVYNGVPKDYTGDEVNVDNLLAVILGNKTALKGGSGKVVDSGPNDHIFIYYSDHGGPGVLGMPTSPNLYANDLNDVLKKKYASGTYKSLVFYLEACESGSIFEGLLP 215          
BLAST of CB293885 vs. ExPASy Swiss-Prot
Match: VPE_RICCO (Vacuolar-processing enzyme OS=Ricinus communis PE=1 SV=1)

HSP 1 Score: 301.212 bits (770), Expect = 3.749e-81
Identity = 138/180 (76.67%), Postives = 159/180 (88.33%), Query Frame = 3
Query:  195 DDDDSVGTRWAVLLAGSNGFWNYRHQADICHAYQLLRKGGLKDENIIVFMYDDIAFNEENPRPGVIINHPHGDDVYKGVPKDYTGEDVTVENFFAVVLGNKTALTGGSGKVVDSGPNDHIFIFYSDHGGPGVLGMPTTRYIYADELIDVLKKKHASGNYKSLVFYLEACESGSIFEGLLP 734
            DDDD +GTRWAVL+AGS GF NYRHQAD+CHAYQLLRKGGLK+ENIIVFMYDDIA NE NPRPGVIINHP G+DVY GVPKDYTGE VT +N +AV+LG+K+A+ GGSGKVVDS PND IF++YSDHGGPGVLGMP   Y+YA + I+VLKKKHA+G YK +V Y+EACESGSIFEG++P
Sbjct:   54 DDDDQLGTRWAVLVAGSMGFGNYRHQADVCHAYQLLRKGGLKEENIIVFMYDDIAKNELNPRPGVIINHPQGEDVYAGVPKDYTGEHVTAKNLYAVLLGDKSAVQGGSGKVVDSKPNDRIFLYYSDHGGPGVLGMPNLPYLYAMDFIEVLKKKHAAGGYKKMVIYVEACESGSIFEGIMP 233          
BLAST of CB293885 vs. ExPASy Swiss-Prot
Match: LEGU_CANEN (Legumain OS=Canavalia ensiformis PE=1 SV=1)

HSP 1 Score: 296.975 bits (759), Expect = 7.071e-80
Identity = 134/178 (75.28%), Postives = 155/178 (87.08%), Query Frame = 3
Query:  201 DDSVGTRWAVLLAGSNGFWNYRHQADICHAYQLLRKGGLKDENIIVFMYDDIAFNEENPRPGVIINHPHGDDVYKGVPKDYTGEDVTVENFFAVVLGNKTALTGGSGKVVDSGPNDHIFIFYSDHGGPGVLGMPTTRYIYADELIDVLKKKHASGNYKSLVFYLEACESGSIFEGLLP 734
            DD VGTRWAVL+AGSNG+ NYRHQAD+CHAYQLL KGG+K+ENI+VFMYDDIA+N  NPRPGVIINHP G DVY GVPKDYTGEDVT EN +AV+LG+K+ + GGSGKV++S P D IFIFYSDHGGPGVLGMP   ++YA + IDVLKKKHASG YK +V Y+EACESGSIFEG++P
Sbjct:   34 DDEVGTRWAVLVAGSNGYGNYRHQADVCHAYQLLIKGGVKEENIVVFMYDDIAYNAMNPRPGVIINHPQGPDVYAGVPKDYTGEDVTPENLYAVILGDKSKVKGGSGKVINSNPEDRIFIFYSDHGGPGVLGMPNAPFVYAMDFIDVLKKKHASGGYKEMVIYIEACESGSIFEGIMP 211          
BLAST of CB293885 vs. ExPASy Swiss-Prot
Match: VPE_SOYBN (Vacuolar-processing enzyme OS=Glycine max PE=2 SV=1)

HSP 1 Score: 295.819 bits (756), Expect = 1.575e-79
Identity = 140/224 (62.50%), Postives = 173/224 (77.23%), Query Frame = 3
Query:   63 VLITLLVALAGIADGSRDIAGDILKLPSEAYRFFHNGGGGAKVNDDDDSVGTRWAVLLAGSNGFWNYRHQADICHAYQLLRKGGLKDENIIVFMYDDIAFNEENPRPGVIINHPHGDDVYKGVPKDYTGEDVTVENFFAVVLGNKTALTGGSGKVVDSGPNDHIFIFYSDHGGPGVLGMPTTRYIYADELIDVLKKKHASGNYKSLVFYLEACESGSIFEGLLP 734
            +++ L+      A  +R     ++KLP+E             V+ D D VGTRWAVL+AGSNG+ NYRHQAD+CHAYQLL KGGLK+ENI+VFMYDDIA NE NPR GVIINHP G+D+Y GVPKDYTG++VT EN FAV+LG+K+ L GGSGKV++S P D IFI+YSDHGGPG+LGMP   Y+YA + IDVLKKKHASG+YK +V Y+EACESGS+FEG++P
Sbjct:   20 MMVVLVRVHGAAARPNRKEWDSVIKLPTEP------------VDADSDEVGTRWAVLVAGSNGYGNYRHQADVCHAYQLLIKGGLKEENIVVFMYDDIATNELNPRHGVIINHPEGEDLYAGVPKDYTGDNVTTENLFAVILGDKSKLKGGSGKVINSKPEDRIFIYYSDHGGPGILGMPNMPYLYAMDFIDVLKKKHASGSYKEMVIYVEACESGSVFEGIMP 231          
BLAST of CB293885 vs. ExPASy Swiss-Prot
Match: VPE2_PHAVU (Vacuolar-processing enzyme OS=Phaseolus vulgaris PE=2 SV=1)

HSP 1 Score: 289.656 bits (740), Expect = 1.129e-77
Identity = 137/223 (61.43%), Postives = 173/223 (77.58%), Query Frame = 3
Query:   66 LITLLVALAGIADGSRDIAGDILKLPSEAYRFFHNGGGGAKVNDDDDSVGTRWAVLLAGSNGFWNYRHQADICHAYQLLRKGGLKDENIIVFMYDDIAFNEENPRPGVIINHPHGDDVYKGVPKDYTGEDVTVENFFAVVLGNKTALTGGSGKVVDSGPNDHIFIFYSDHGGPGVLGMPTTRYIYADELIDVLKKKHASGNYKSLVFYLEACESGSIFEGLLP 734
            ++ +++ + G     +D    ++KLP++            +V+ + D VGTRWAVL+AGSNG+ NYRHQAD+CHAYQLL KGG+K+ENI+VFMYDDIA +E NPRPGVIIN+P G DVY GVPKDYTGE VT  NFFAV+LG+K+ + GGSGKV++S P D IF++YSDHGGPGVLGMP   Y+YA + IDVLKKKHASG YK +V Y+EACESGSIFEG++P
Sbjct:   22 MLVMVMRIQGTNGKEQD---SVIKLPTQ------------EVDAESDEVGTRWAVLVAGSNGYGNYRHQADVCHAYQLLIKGGVKEENIVVFMYDDIATHELNPRPGVIINNPQGPDVYAGVPKDYTGESVTSHNFFAVLLGDKSKVKGGSGKVINSKPEDRIFVYYSDHGGPGVLGMPNMPYLYAMDFIDVLKKKHASGGYKEMVIYVEACESGSIFEGIMP 229          
BLAST of CB293885 vs. ExPASy Swiss-Prot
Match: VPEB_ARATH (Vacuolar-processing enzyme beta-isozyme OS=Arabidopsis thaliana GN=At1g62710 PE=2 SV=3)

HSP 1 Score: 287.73 bits (735), Expect = 4.290e-77
Identity = 128/181 (70.72%), Postives = 155/181 (85.64%), Query Frame = 3
Query:  192 NDDDDSVGTRWAVLLAGSNGFWNYRHQADICHAYQLLRKGGLKDENIIVFMYDDIAFNEENPRPGVIINHPHGDDVYKGVPKDYTGEDVTVENFFAVVLGNKTALTGGSGKVVDSGPNDHIFIFYSDHGGPGVLGMPTTRYIYADELIDVLKKKHASGNYKSLVFYLEACESGSIFEGLLP 734
            + D+D VGTRWAVL+AGS+G+ NYRHQAD+CHAYQ+LRKGGLK+ENI+V MYDDIA +  NPRPG +INHP GDDVY GVPKDYTG  VT  NF+AV+LG++ A+ GGSGKV+ S PNDHIF++Y+DHGGPGVLGMP T +IYA + I+ LKKKHASG YK +V Y+EACESGSIFEG++P
Sbjct:   42 DQDEDGVGTRWAVLVAGSSGYGNYRHQADVCHAYQILRKGGLKEENIVVLMYDDIANHPLNPRPGTLINHPDGDDVYAGVPKDYTGSSVTAANFYAVLLGDQKAVKGGSGKVIASKPNDHIFVYYADHGGPGVLGMPNTPHIYAADFIETLKKKHASGTYKEMVIYVEACESGSIFEGIMP 222          
The following BLAST results are available for this feature:
BLAST of CB293885 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 27
Match NameE-valueIdentityDescription
VPE_CITSI2.736e-13299.13Vacuolar-processing enzyme OS=Citrus sinensis PE=2... [more]
VPEG_ARATH2.419e-9673.82Vacuolar-processing enzyme gamma-isozyme OS=Arabid... [more]
VPE_VICSA8.603e-9470.00Vacuolar-processing enzyme OS=Vicia sativa PE=1 SV... [more]
VPE1_PHAVU8.903e-9170.43Vacuolar-processing enzyme OS=Phaseolus vulgaris P... [more]
VPEA_ARATH6.380e-8974.76Vacuolar-processing enzyme alpha-isozyme OS=Arabid... [more]
VPE_RICCO3.749e-8176.67Vacuolar-processing enzyme OS=Ricinus communis PE=... [more]
LEGU_CANEN7.071e-8075.28Legumain OS=Canavalia ensiformis PE=1 SV=1[more]
VPE_SOYBN1.575e-7962.50Vacuolar-processing enzyme OS=Glycine max PE=2 SV=... [more]
VPE2_PHAVU1.129e-7761.43Vacuolar-processing enzyme OS=Phaseolus vulgaris P... [more]
VPEB_ARATH4.290e-7770.72Vacuolar-processing enzyme beta-isozyme OS=Arabido... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS01_06de01_g1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_06de01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB293885 ID=CB293885; Name=CB293885; organism=Citrus sinensis; type=EST; length=735bp
GCCCTAGGCTCCAGCAACCAATCAACCCCCTTCAAAAAACCATGACGCGC
CTTGCCTCCGGCGTGCTAATCACGCTCCTAGTCGCTCTTGCAGGAATCGC
CGATGGAAGCAGAGACATAGCAGGTGACATTCTGAAGCTACCATCGGAAG
CCTATAGGTTCTTCCATAATGGTGGGGGAGGGGCAAAGGTCAACGATGAT
GATGATTCTGTCGGCACGAGATGGGCCGTCCTGCTTGCCGGATCTAATGG
CTTCTGGAATTACAGGCATCAGGCTGATATTTGTCATGCTTATCAACTCT
TGAGGAAAGGTGGGCTGAAGGATGAAAATATTATTGTTTTCATGTATGAT
GACATCGCTTTCAATGAAGAGAACCCAAGGCCTGGAGTCATCATTAACCA
CCCCCATGGCGATGATGTTTACAAAGGAGTTCCAAAGGATTACACGGGGG
AAGATGTTACTGTTGAAAACTTTTTTGCTGTTGTCCTGGGAAATAAAACA
GCTCTTACAGGGGGCAGTGGGAAGGTTGTGGATAGCGGCCCCAATGATCA
TATTTTCATATTCTACTCAGATCATGGTGGCCCTGGGGTGCTAGGGATGC
CCACCACTCGATACATATATGCTGATGAACTGATCGATGTCTTAAAAAAG
AAGCATGCTTCTGGGAACTACAAAAGCTTGGTATTTTATCTCGAAGCCTG
TGAATCTGGAAGTATCTTTGAGGGTCTTCTTCCTG
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