CB293886

Overview
NameCB293886
Unique NameCB293886
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length846
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig11809 contig Csv1_Contig11809:550..1395. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB293886 vs. ExPASy Swiss-Prot
Match: NAC29_ARATH (NAC domain-containing protein 29 OS=Arabidopsis thaliana GN=NAC029 PE=2 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 2.305e-19
Identity = 65/171 (38.01%), Postives = 92/171 (53.80%), Query Frame = -2
Query:  357 SVGAHQENIGVKKALVFYKGRPPKGVKTNWIMHEYRLAENPKNLNHTKMRPKDSSMRLDDWVLCRIYRKSHVS-LPTSAGAASDHDLEEEEEKFNLHDTLLPILRSPPSHNTTLNPQKSSSFSNLLDAMDY----SMLSNFLSENQTSHTGSESNPL----FNSGILEQHH 842
            ++ +   N+GVKKALVFYKGRPPKG+KT+WIMHEYRL ++ K         ++ SMRLD+WVLCRIY+K   S L        D  L E+E K  +++             T++   ++ S ++LL+ MDY    S + NF   +      SES+      FN   +  HH
Sbjct:   98 AIHSGSSNVGVKKALVFYKGRPPKGIKTDWIMHEYRLHDSRK-----ASTKRNGSMRLDEWVLCRIYKKRGASKLLNEQEGFMDEVLMEDETKVVVNEAERR-TEEEIMMMTSMKLPRTCSLAHLLE-MDYMGPVSHIDNFSQFDHLHQPDSESSWFGDLQFNQDEILNHH 261          
BLAST of CB293886 vs. ExPASy Swiss-Prot
Match: NAC18_ARATH (NAC domain-containing protein 18 OS=Arabidopsis thaliana GN=NAC018 PE=2 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 2.158e-17
Identity = 41/69 (59.42%), Postives = 53/69 (76.81%), Query Frame = -2
Query:  630 GAHQENIGVKKALVFYKGRPPKGVKTNWIMHEYRLAENPKNLNHTKMRPKDSSMRLDDWVLCRIYRKSH 836
            G   + +GVKKALVFY G+PPKGVK++WIMHEYRL +N K  +      K +S+RLDDWVLCRIY+K++
Sbjct:  112 GGGSKKVGVKKALVFYSGKPPKGVKSDWIMHEYRLTDN-KPTHICDFGNKKNSLRLDDWVLCRIYKKNN 179          
BLAST of CB293886 vs. ExPASy Swiss-Prot
Match: NAC2_ARATH (NAC domain-containing protein 2 OS=Arabidopsis thaliana GN=NAC002 PE=2 SV=2)

HSP 1 Score: 89.3521 bits (220), Expect = 2.818e-17
Identity = 55/140 (39.29%), Postives = 73/140 (52.14%), Query Frame = -2
Query:  399 IGVKKALVFYKGRPPKGVKTNWIMHEYRLAENPKNLNHTKMRPKDSSMRLDDWVLCRIYRKSHVSLPTSAGAASDHDLEEEEEKFNLHDTLLPILRSPPSHNTTLNPQKSSSFSNLLDAMDYSMLSNFLSENQTSHTGSE 818
            +G+KKALVFY G+ PKG KTNWIMHEYRLA+  ++     +R K +S+RLDDWVLCRIY K   +          +  E  EEK  + + ++P    PP   +      +S     L   D S     +S   TS   SE
Sbjct:  103 VGIKKALVFYAGKAPKGEKTNWIMHEYRLADVDRS-----VRKKKNSLRLDDWVLCRIYNKKGATERRGPPPPVVYGDEIMEEKPKVTEMVMP---PPPQQTSEFAYFDTSDSVPKLHTTDSSCSEQVVSPEFTSEVQSE 234          
BLAST of CB293886 vs. ExPASy Swiss-Prot
Match: NAC71_ORYSJ (NAC domain-containing protein 71 OS=Oryza sativa subsp. japonica GN=NAC71 PE=2 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 2.386e-16
Identity = 39/65 (60.00%), Postives = 50/65 (76.92%), Query Frame = -2
Query:  627 IGVKKALVFYKGRPPKGVKTNWIMHEYRLAENPKNLNHTKM-RPKDSSMRLDDWVLCRIYRKSHV 818
            + +KKALVFY G+PPKGVKTNWIMHEYRLA+  ++    K+ +   +++RLDDWVLCRIY K  V
Sbjct:  105 VAIKKALVFYAGKPPKGVKTNWIMHEYRLADVDRSAAARKLSKSSHNALRLDDWVLCRIYNKKGV 169          
BLAST of CB293886 vs. ExPASy Swiss-Prot
Match: NA102_ARATH (NAC domain-containing protein 102 OS=Arabidopsis thaliana GN=NAC102 PE=2 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 4.069e-16
Identity = 38/63 (60.32%), Postives = 49/63 (77.78%), Query Frame = -2
Query:  636 ENIGVKKALVFYKGRPPKGVKTNWIMHEYRLAENPKNLNHTKMRPKDSSMRLDDWVLCRIYRK 824
            + +G+KKALVFY G+ PKG+KTNWIMHEYRLA    N++ +    K +++RLDDWVLCRIY K
Sbjct:  144 KTLGIKKALVFYAGKAPKGIKTNWIMHEYRLA----NVDRSASTNKKNNLRLDDWVLCRIYNK 202          
BLAST of CB293886 vs. ExPASy Swiss-Prot
Match: NAC72_ARATH (NAC domain-containing protein 72 OS=Arabidopsis thaliana GN=NAC072 PE=2 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 7.674e-15
Identity = 49/128 (38.28%), Postives = 63/128 (49.22%), Query Frame = -2
Query:  456 VGAHQENIGVKKALVFYKGRPPKGVKTNWIMHEYRLAENPKNLNHTKMRPKDSSMRLDDWVLCRIYRKSHVSLPTSAGAASDHDLEEEEEKFNLHDTLLPILRSPPSHNTTLNPQKSSSFSNLLDAMD 839
            + A    +G+KKALVFY G+ PKG KTNWIMHEYRL E+ ++           S +LDDWVLCRIY+K+  S                         + P+      H+T  N   SSS S L D +D
Sbjct:  104 ITADGRRVGIKKALVFYAGKAPKGTKTNWIMHEYRLIEHSRS---------HGSSKLDDWVLCRIYKKTSGS---------------------QRQAVTPVQACREEHST--NGSSSSSSSQLDDVLD 199          
BLAST of CB293886 vs. ExPASy Swiss-Prot
Match: NAC48_ORYSJ (NAC domain-containing protein 48 OS=Oryza sativa subsp. japonica GN=NAC48 PE=2 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 7.674e-15
Identity = 40/75 (53.33%), Postives = 52/75 (69.33%), Query Frame = -2
Query:  597 IGVKKALVFYKGRPPKGVKTNWIMHEYRLAENPKNLNHTKMRPKDSSMRLDDWVLCRIY-RKSHVSLPTSAGAAS 818
            + +KKALVFY G+ PKG KTNWIMHEYRLA+  ++        K +S+RLDDWVLCRIY +K  +  P +A  A+
Sbjct:  105 VAIKKALVFYAGKAPKGEKTNWIMHEYRLADVDRSAR------KKNSLRLDDWVLCRIYNKKGGLEKPPAAAVAA 173          
BLAST of CB293886 vs. ExPASy Swiss-Prot
Match: NAC19_ARATH (NAC domain-containing protein 19 OS=Arabidopsis thaliana GN=NAC019 PE=1 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 1.002e-14
Identity = 44/126 (34.92%), Postives = 65/126 (51.59%), Query Frame = -2
Query:  462 VGAHQENIGVKKALVFYKGRPPKGVKTNWIMHEYRLAENPKNLNHTKMRPKDSSMRLDDWVLCRIYRKSHVSLPTSAGAASDHDLEEEEEKFNLHDTLLPILRSPPSHNTTLNPQKSSSFSNLLDA 839
            +    + +G+KKALVFY G+ PKG KTNWIMHEYRL E  +         ++ S +LDDWVLCRIY+K                  +   +  ++D  +   R   ++ T+     SS F ++LD+
Sbjct:  104 ISTEGQRVGIKKALVFYIGKAPKGTKTNWIMHEYRLIEPSR---------RNGSTKLDDWVLCRIYKK------------------QSSAQKQVYDNGIANAREFSNNGTSSTTSSSSHFEDVLDS 202          
BLAST of CB293886 vs. ExPASy Swiss-Prot
Match: NAC55_ARATH (NAC domain-containing protein 55 OS=Arabidopsis thaliana GN=NAC055 PE=2 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 3.809e-14
Identity = 36/68 (52.94%), Postives = 45/68 (66.18%), Query Frame = -2
Query:  636 VGAHQENIGVKKALVFYKGRPPKGVKTNWIMHEYRLAENPKNLNHTKMRPKDSSMRLDDWVLCRIYRK 839
            +      +G+KKALVFY G+ PKG KTNWIMHEYRL E  +         ++ S +LDDWVLCRIY+K
Sbjct:  104 ISTEGRRVGIKKALVFYIGKAPKGTKTNWIMHEYRLIEPSR---------RNGSTKLDDWVLCRIYKK 162          
BLAST of CB293886 vs. ExPASy Swiss-Prot
Match: NAC67_ORYSJ (NAC domain-containing protein 67 OS=Oryza sativa subsp. japonica GN=NAC67 PE=2 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 4.974e-14
Identity = 46/123 (37.40%), Postives = 59/123 (47.97%), Query Frame = -2
Query:  447 GVKKALVFYKGRPPKGVKTNWIMHEYRLAENPKNLNHTKMRPKDSSMRLDDWVLCRIYRKSHVSLPTSAGAASDHDLEEEEEKFNLHDTLLPILRSPPSHNTTLNPQKSSSFSNLLDAMDYSM 815
            G+KKALVFY G+PP+GVKT WIMHEYRLA+               ++RLDDWVLCR+Y K                 + E EK          + +  S   T  P+     S+    MDYS+
Sbjct:  115 GIKKALVFYHGKPPRGVKTEWIMHEYRLAKK----GGAAAAAGAGALRLDDWVLCRLYNK-----------------KNEWEKMQSRKEEEEAMAAAQSWGETRTPESEVVDSDAFPEMDYSL 216          
The following BLAST results are available for this feature:
BLAST of CB293886 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 15
Match NameE-valueIdentityDescription
NAC29_ARATH2.305e-1938.01NAC domain-containing protein 29 OS=Arabidopsis th... [more]
NAC18_ARATH2.158e-1759.42NAC domain-containing protein 18 OS=Arabidopsis th... [more]
NAC2_ARATH2.818e-1739.29NAC domain-containing protein 2 OS=Arabidopsis tha... [more]
NAC71_ORYSJ2.386e-1660.00NAC domain-containing protein 71 OS=Oryza sativa s... [more]
NA102_ARATH4.069e-1660.32NAC domain-containing protein 102 OS=Arabidopsis t... [more]
NAC72_ARATH7.674e-1538.28NAC domain-containing protein 72 OS=Arabidopsis th... [more]
NAC48_ORYSJ7.674e-1553.33NAC domain-containing protein 48 OS=Oryza sativa s... [more]
NAC19_ARATH1.002e-1434.92NAC domain-containing protein 19 OS=Arabidopsis th... [more]
NAC55_ARATH3.809e-1452.94NAC domain-containing protein 55 OS=Arabidopsis th... [more]
NAC67_ORYSJ4.974e-1437.40NAC domain-containing protein 67 OS=Oryza sativa s... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS01_06de03_b1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_06de03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB293886 ID=CB293886; Name=CB293886; organism=Citrus sinensis; type=EST; length=846bp
TTTTTTTTTTTTTTTTCTTTTTAATTCTTTTGGATTGATTCATTTTCTCA
TCCTTGAAACTGAAGATGTGGGCTCAGTAGTAACTGCTGGGTCAAGAATG
GCTGGTGTAAATAGTTGTACGGAGGATCAAATTGATCAGTAGTGCTACTA
CTGAAACTGCAAGTAGTGATGAATTTCTTTGATGGGTGCAACATGTTCTC
ATGATGATCTATATTTGGGTGTGGGCGCTTGTGCTGCTGGTTCTCCATAT
TGTTTGAAACTGAATAGTTCAACTGAGGTAGTTTTTGAATCAAAAAACTG
TTAGTGCAACTTGTGTTCGTGTTGGCGCCATTGCCATTGCCATTGTTGAA
TGAAGAATGGTGCTGCTCTAAAATCCCTGAATTGAACAGCGGGTTGGATT
CAGATCCGGTATGACTCGTTTGGTTCTCGGATAGAAAATTACTCAGCATT
GAGTAGTCCATTGCATCCAATAAGTTGGAGAAGGATGAAGATTTCTGAGG
ATTGAGAGTAGTGTTGTGGCTTGGTGGACTTCTCAGGATCGGCAACAGGG
TGTCATGAAGGTTAAATTTTTCCTCCTCTTCTTCTAGATCATGATCACTT
GCTGCACCGGCTGATGTTGGCAGGGAGACATGGGACTTGCGGTAGATGCG
GCAGAGAACCCAATCATCCAACCTCATGGAAGAGTCTTTGGGCCTCATCT
TGGTGTGATTGAGATTCTTGGGGTTTTCAGCAAGGCGATACTCATGCATA
ATCCAATTAGTTTTAACTCCCTTCGGAGGCCTGCCTTTGTAGAACACAAG
AGCTTTCTTCACACCAATGTTTTCTTGATGAGCTCCCACAGATGTT
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