CB293890

Overview
NameCB293890
Unique NameCB293890
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length587
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig11399 contig Csv1_Contig11399:815..1401. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB293890 vs. ExPASy Swiss-Prot
Match: THI4_CITSI (Thiazole biosynthetic enzyme, chloroplastic OS=Citrus sinensis GN=THI1 PE=2 SV=1)

HSP 1 Score: 192.2 bits (487), Expect = 1.605e-48
Identity = 97/117 (82.91%), Postives = 107/117 (91.45%), Query Frame = -3
Query:  232 GPFGATGVKRLKSIGMIDSVPGMKALDMNTAEDAIVRLTREIVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALKALGQPNAIDGTFSEVTEVQPEFVLAAPENSEIVDA 582
            GPFGATGVKRLKSIGMI+ VPGMKALDMN+AEDAIVRLTRE+VPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALK+LGQPNA+DGT+  V  V PE +LAA +++E  DA
Sbjct:  242 GPFGATGVKRLKSIGMIEEVPGMKALDMNSAEDAIVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALKSLGQPNALDGTY--VGGVHPELILAAADSAETADA 356          
BLAST of CB293890 vs. ExPASy Swiss-Prot
Match: THI4_ARATH (Thiazole biosynthetic enzyme, chloroplastic OS=Arabidopsis thaliana GN=THI1 PE=1 SV=1)

HSP 1 Score: 189.889 bits (481), Expect = 7.965e-48
Identity = 99/117 (84.62%), Postives = 104/117 (88.89%), Query Frame = -3
Query:  232 GPFGATGVKRLKSIGMIDSVPGMKALDMNTAEDAIVRLTREIVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALKALGQPNAIDGTFSEVTEVQPEFVLAAPENSEIVDA 582
            GPFGATGVKRLKSIGMID VPGMKALDMNTAEDAIVRLTRE+VPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKA  LALKALG PNAIDGT   V  + PE VLAA +++E VDA
Sbjct:  235 GPFGATGVKRLKSIGMIDHVPGMKALDMNTAEDAIVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAGQLALKALGLPNAIDGTL--VGNLSPELVLAAADSAETVDA 349          
BLAST of CB293890 vs. ExPASy Swiss-Prot
Match: THI4_ALNGL (Thiazole biosynthetic enzyme, chloroplastic OS=Alnus glutinosa GN=THI4 PE=2 SV=1)

HSP 1 Score: 189.119 bits (479), Expect = 1.359e-47
Identity = 96/117 (82.05%), Postives = 106/117 (90.60%), Query Frame = -3
Query:  232 GPFGATGVKRLKSIGMIDSVPGMKALDMNTAEDAIVRLTREIVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALKALGQPNAIDGTFSEVTEVQPEFVLAAPENSEIVDA 582
            GPFGATGVK L+SIGMID+VPGMKALDMN AEDAIVRLTREIVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALKALG PNA+DG++  V  + PE +LAA +++EI DA
Sbjct:  238 GPFGATGVKSLRSIGMIDTVPGMKALDMNVAEDAIVRLTREIVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALKALGLPNALDGSY--VGGIHPELILAAADSAEIADA 352          
BLAST of CB293890 vs. ExPASy Swiss-Prot
Match: THI42_MAIZE (Thiazole biosynthetic enzyme 1-2, chloroplastic OS=Zea mays GN=THI1-2 PE=2 SV=1)

HSP 1 Score: 184.111 bits (466), Expect = 4.371e-46
Identity = 92/117 (78.63%), Postives = 102/117 (87.18%), Query Frame = -3
Query:  232 GPFGATGVKRLKSIGMIDSVPGMKALDMNTAEDAIVRLTREIVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALKALGQPNAIDGTFSEVTEVQPEFVLAAPENSEIVDA 582
            GPFGATGVKRL+ IGMI +VPGMKALDMN AED IVRLTRE+VPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALKALG+PNA+DGT  EV+    E  + A ++ E+VDA
Sbjct:  238 GPFGATGVKRLQDIGMISAVPGMKALDMNAAEDEIVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALKALGRPNAVDGTIPEVSPALREEFVIASKDDEVVDA 354          
BLAST of CB293890 vs. ExPASy Swiss-Prot
Match: THI41_MAIZE (Thiazole biosynthetic enzyme 1-1, chloroplastic OS=Zea mays GN=THI1-1 PE=2 SV=1)

HSP 1 Score: 179.489 bits (454), Expect = 1.076e-44
Identity = 92/117 (78.63%), Postives = 102/117 (87.18%), Query Frame = -3
Query:  232 GPFGATGVKRLKSIGMIDSVPGMKALDMNTAEDAIVRLTREIVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALKALGQPNAIDGTFSEVTEVQPEFVLAAPENSEIVDA 582
            GPFGATGVKRL+ IGMI +VPGMKALDMNTAED IVRLTRE+VPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALKALG+PNA+DGT S       E ++ A ++ E+VDA
Sbjct:  241 GPFGATGVKRLQDIGMISAVPGMKALDMNTAEDEIVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALKALGRPNAVDGTMSPPLR---EELMIAYKDDEVVDA 354          
BLAST of CB293890 vs. ExPASy Swiss-Prot
Match: THI4_FUSSH (Thiazole biosynthetic enzyme, mitochondrial OS=Fusarium solani subsp. phaseoli GN=STI35 PE=2 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 1.787e-23
Identity = 55/83 (66.27%), Postives = 67/83 (80.72%), Query Frame = -3
Query:  331 PFGATGVKRLKSIGMIDSVPGMKALDMNTAEDAIVRLTREIVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALKAL 579
            P GA  VKRL S+G I+ + GM+ LDMN AEDAIV+ TREIVPG+IV GME++E+DGA RMGPTFGAM++SG KAA  ALK +
Sbjct:  233 PMGAFCVKRLVSMGRIEKLGGMRGLDMNVAEDAIVKGTREIVPGLIVGGMELSEVDGANRMGPTFGAMVLSGLKAAEEALKVI 315          
BLAST of CB293890 vs. ExPASy Swiss-Prot
Match: THI4_FUSOX (Thiazole biosynthetic enzyme, mitochondrial OS=Fusarium oxysporum GN=STI35 PE=2 SV=2)

HSP 1 Score: 106.301 bits (264), Expect = 1.158e-22
Identity = 55/82 (67.07%), Postives = 65/82 (79.27%), Query Frame = -3
Query:  337 GPFGATGVKRLKSIGMIDSVPGMKALDMNTAEDAIVRLTREIVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALK 582
            GP GA  VKRL S+  I+ + GM+ LDMN AEDAIV+ TREIVPG+IV GME++E+DGA RMGPTFGAM +SG KAA  ALK
Sbjct:  228 GPMGAFCVKRLVSMQRIEKLGGMRGLDMNLAEDAIVKGTREIVPGLIVGGMELSEVDGANRMGPTFGAMALSGLKAAEEALK 309          
BLAST of CB293890 vs. ExPASy Swiss-Prot
Match: THI4_ASPOR (Thiazole biosynthetic enzyme, mitochondrial OS=Aspergillus oryzae GN=thiA PE=3 SV=2)

HSP 1 Score: 106.301 bits (264), Expect = 1.158e-22
Identity = 52/86 (60.47%), Postives = 66/86 (76.74%), Query Frame = -3
Query:  325 GPFGATGVKRLKSIGMIDSVPGMKALDMNTAEDAIVRLTREIVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALKALGQ 582
            GPFGA   KRL S+G +D + GM+ LDMN+AEDAIV+ TRE+  G+I+ GME++EIDG  RMGPTFGAM++SG KAA  ALK   +
Sbjct:  235 GPFGAFCAKRLVSMGSVDKLGGMRGLDMNSAEDAIVKNTREVTKGLIIGGMELSEIDGFNRMGPTFGAMVLSGVKAAEEALKVFDE 320          
BLAST of CB293890 vs. ExPASy Swiss-Prot
Match: THI2_SCHPO (Thiazole biosynthetic enzyme, mitochondrial OS=Schizosaccharomyces pombe GN=thi2 PE=2 SV=2)

HSP 1 Score: 100.908 bits (250), Expect = 4.866e-21
Identity = 52/91 (57.14%), Postives = 64/91 (70.33%), Query Frame = -3
Query:  310 GPFGATGVKRLKSIGMIDSVPGMKALDMNTAEDAIVRLTREIVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALKALGQPNAID 582
            GPFGA  VKRL S  ++ ++  M+ LDMN AED IV+ TRE+ PGMIV GME++E DGA RMGPTFG MM SG KAA  AL    +  A++
Sbjct:  234 GPFGAFCVKRLASAQLVSNLHDMRPLDMNRAEDLIVKGTREVFPGMIVGGMELSEFDGANRMGPTFGGMMFSGIKAAQEALAIFDERKAVN 324          
BLAST of CB293890 vs. ExPASy Swiss-Prot
Match: THI4_UROFA (Thiazole biosynthetic enzyme, mitochondrial OS=Uromyces fabae GN=THI2 PE=3 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 6.355e-21
Identity = 49/92 (53.26%), Postives = 68/92 (73.91%), Query Frame = -3
Query:  307 GPFGATGVKRLKSIGMIDSVPGMKALDMNTAEDAIVRLTREIVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALKALGQPNAIDG 582
            GPFGA  VKR+ S G+ + +  M+ LDM  AED I   TREI+PG+IV GME++E DG+ RMGPTFGAM++SG++AA +AL++L +    +G
Sbjct:  240 GPFGAFCVKRVASAGLSEGLGDMRPLDMERAEDHIANKTREILPGLIVGGMELSEFDGSARMGPTFGAMLLSGKRAAEVALQSLDRVKIEEG 331          
The following BLAST results are available for this feature:
BLAST of CB293890 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 17
Match NameE-valueIdentityDescription
THI4_CITSI1.605e-4882.91Thiazole biosynthetic enzyme, chloroplastic OS=Cit... [more]
THI4_ARATH7.965e-4884.62Thiazole biosynthetic enzyme, chloroplastic OS=Ara... [more]
THI4_ALNGL1.359e-4782.05Thiazole biosynthetic enzyme, chloroplastic OS=Aln... [more]
THI42_MAIZE4.371e-4678.63Thiazole biosynthetic enzyme 1-2, chloroplastic OS... [more]
THI41_MAIZE1.076e-4478.63Thiazole biosynthetic enzyme 1-1, chloroplastic OS... [more]
THI4_FUSSH1.787e-2366.27Thiazole biosynthetic enzyme, mitochondrial OS=Fus... [more]
THI4_FUSOX1.158e-2267.07Thiazole biosynthetic enzyme, mitochondrial OS=Fus... [more]
THI4_ASPOR1.158e-2260.47Thiazole biosynthetic enzyme, mitochondrial OS=Asp... [more]
THI2_SCHPO4.866e-2157.14Thiazole biosynthetic enzyme, mitochondrial OS=Sch... [more]
THI4_UROFA6.355e-2153.26Thiazole biosynthetic enzyme, mitochondrial OS=Uro... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS01_06de05_b1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_06de05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB293890 ID=CB293890; Name=CB293890; organism=Citrus sinensis; type=EST; length=587bp
TTTTTTTTTTTTTTTTTCAANATAAAAGCAGCATTGCCGTGTTTTCTTTT
TTTAGCTGTTGAATTCATTAATTTGGAACTCAACAACAATCGAAGAAAAA
TTACACCAAATTTCTCCATCCCCACGATATTTAGTGGCCGATCGTAGTTA
CAATTTTTATTTTTTTTGGGTTTATTGTTGATTTTGAATTCTCATCAAAA
TGTACATAATTCTCAAATTTTATAATTTTTAAGCATCAACAATCTCGCTG
TTCTCAGGGGCAGCAAGGACAAACTCTGGCTGTACTTCCGTAACTTCACT
GAATGTCCCATCTATCGCATTCGGCTGCCCCAATGCCTTCAACGCCAAAT
GGGCTGCCTTCTGCCCTGAAATCATCATGGCCCCGAATGTAGGTCCCATT
CTAGGGGCACCGTCGATCTCTGCGACTTCCATGCCCGTGACAATCATGCC
AGGCACGATCTCCCTGGTAAGCCTAACGATAGCATCCTCTGCAGTGTTCA
TATCGAGAGCTTTCATTCCGGGGACGGAGTCAATCATGCCAATACTCTTA
AGCCTCTTAACACCGGTAGCCCCAAAAGGGCCTCGTG
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