CB293896

Overview
NameCB293896
Unique NameCB293896
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length864
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1496 contig Csv1_Contig1496:492..1355. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB293896 vs. ExPASy Swiss-Prot
Match: A494_ARATH (Probable cysteine proteinase A494 OS=Arabidopsis thaliana GN=At2g21430 PE=2 SV=2)

HSP 1 Score: 407.527 bits (1046), Expect = 4.873e-113
Identity = 190/220 (86.36%), Postives = 209/220 (95.00%), Query Frame = -1
Query:  205 EKGAVGXVKDQGSCGSCWSFSTTGALEGANFLATGKLVSLSEQQLVDCDHECDPEEPGSCDSGCNGGLMNSAFEYTLKAGGLMREEDYPYTGTDRGHACKFDKSKIAASVANFSVVSLDEDQIAANLVKNGPLAVAINAVYMQTYIGGVSCPYICSRRLDHGVLLVGYGSAGYAPIRLKEKPYWIIKNSWGESWGENGYYKICRGRNVCGVDSMVSTIAA 864
            ++GAV  VK+QGSCGSCWSFSTTGALEGA+FLATGKLVSLSEQQLVDCDHECDPEE GSCDSGCNGGLMNSAFEYTLK GGLMRE+DYPYTGTD G +CK D+SKI ASV+NFSVVS++EDQIAANL+KNGPLAVAINA YMQTYIGGVSCPYICSRRL+HGVLLVGYGSAG++  RLKEKPYWIIKNSWGESWGENG+YKIC+GRN+CGVDS+VST+AA
Sbjct:  140 DRGAVTPVKNQGSCGSCWSFSTTGALEGAHFLATGKLVSLSEQQLVDCDHECDPEEEGSCDSGCNGGLMNSAFEYTLKTGGLMREKDYPYTGTDGG-SCKLDRSKIVASVSNFSVVSINEDQIAANLIKNGPLAVAINAAYMQTYIGGVSCPYICSRRLNHGVLLVGYGSAGFSQARLKEKPYWIIKNSWGESWGENGFYKICKGRNICGVDSLVSTVAA 358          
BLAST of CB293896 vs. ExPASy Swiss-Prot
Match: RD19A_ARATH (Cysteine proteinase RD19a OS=Arabidopsis thaliana GN=RD19A PE=2 SV=1)

HSP 1 Score: 405.601 bits (1041), Expect = 1.852e-112
Identity = 190/222 (85.59%), Postives = 205/222 (92.34%), Query Frame = -1
Query:  199 EKGAVGXVKDQGSCGSCWSFSTTGALEGANFLATGKLVSLSEQQLVDCDHECDPEEPGSCDSGCNGGLMNSAFEYTLKAGGLMREEDYPYTGTDRGHACKFDKSKIAASVANFSVVSLDEDQIAANLVKNGPLAVAINAVYMQTYIGGVSCPYICSRRLDHGVLLVGYGSAGYAPIRLKEKPYWIIKNSWGESWGENGYYKICRGRNVCGVDSMVSTIAAAV 864
            + GAV  VK+QGSCGSCWSFS TGALEGANFLATGKLVSLSEQQLVDCDHECDPEE  SCDSGCNGGLMNSAFEYTLK GGLM+EEDYPYTG D G  CK DKSKI ASV+NFSV+S+DE+QIAANLVKNGPLAVAINA YMQTYIGGVSCPYIC+RRL+HGVLLVGYG+AGYAP R KEKPYWIIKNSWGE+WGENG+YKIC+GRN+CGVDSMVST+AA V
Sbjct:  143 DHGAVTPVKNQGSCGSCWSFSATGALEGANFLATGKLVSLSEQQLVDCDHECDPEEADSCDSGCNGGLMNSAFEYTLKTGGLMKEEDYPYTGKD-GKTCKLDKSKIVASVSNFSVISIDEEQIAANLVKNGPLAVAINAGYMQTYIGGVSCPYICTRRLNHGVLLVGYGAAGYAPARFKEKPYWIIKNSWGETWGENGFYKICKGRNICGVDSMVSTVAATV 363          
BLAST of CB293896 vs. ExPASy Swiss-Prot
Match: CYSP_PEA (Cysteine proteinase 15A OS=Pisum sativum PE=2 SV=1)

HSP 1 Score: 384.8 bits (987), Expect = 3.383e-106
Identity = 180/222 (81.08%), Postives = 204/222 (91.89%), Query Frame = -1
Query:  202 EKGAVGXVKDQGSCGSCWSFSTTGALEGANFLATGKLVSLSEQQLVDCDHECDPEEPGSCDSGCNGGLMNSAFEYTLKAGGLMREEDYPYTGTDRGHACKFDKSKIAASVANFSVVSLDEDQIAANLVKNGPLAVAINAVYMQTYIGGVSCPYICSR-RLDHGVLLVGYGSAGYAPIRLKEKPYWIIKNSWGESWGENGYYKICRGRNVCGVDSMVSTIAAA 864
            EKGAV  VKDQGSCGSCW+FSTTGALEGA++LATGKLVSLSEQQLVDCDH CDPE+ GSCDSGCNGGLMN+AFEY L++GG+++E+DY YTG D   +CKFDKSK+ ASV+NFSVV+LDEDQIAANLVKNGPLAVAINA +MQTY+ GVSCPY+C++ RLDHGVLLVG+G   YAPIRLKEKPYWIIKNSWG++WGE GYYKICRGRNVCGVDSMVST+AAA
Sbjct:  140 EKGAVTPVKDQGSCGSCWAFSTTGALEGAHYLATGKLVSLSEQQLVDCDHVCDPEQAGSCDSGCNGGLMNNAFEYLLESGGVVQEKDYAYTGRD--GSCKFDKSKVVASVSNFSVVTLDEDQIAANLVKNGPLAVAINAAWMQTYMSGVSCPYVCAKSRLDHGVLLVGFGKGAYAPIRLKEKPYWIIKNSWGQNWGEQGYYKICRGRNVCGVDSMVSTVAAA 359          
BLAST of CB293896 vs. ExPASy Swiss-Prot
Match: CYSP1_MAIZE (Cysteine proteinase 1 OS=Zea mays GN=CCP1 PE=2 SV=1)

HSP 1 Score: 367.081 bits (941), Expect = 7.299e-101
Identity = 173/223 (77.58%), Postives = 193/223 (86.55%), Query Frame = -1
Query:  205 EKGAVGXVKDQGSCGSCWSFSTTGALEGANFLATGKLVSLSEQQLVDCDHECDPEEPGSCDSGCNGGLMNSAFEYTLKAGGLMREEDYPYTGTDRGHACKFDKSKIAASVANFSVVSLDEDQIAANLVKNGPLAVAINAVYMQTYIGGVSCPYICSRRLDHGVLLVGYGSAGYAPIRLKEKPYWIIKNSWGESWGENGYYKICRG---RNVCGVDSMVSTIAA 864
            + GAVG VK+QGSCGSCWSFS +GALEGA++LATGKL  LSEQQ VDCDHECD  EP SCDSGCNGGLM +AF Y  KAGGL  E+DYPYTG+D    CKFDKSKI ASV NFSVVS+DE QI+ANL+K+GPLA+ INA YMQTYIGGVSCPYIC R LDHGVLLVGYG++G+APIRLK+KPYWIIKNSWGE+WGENGYYKICRG   RN CGVDSMVST++A
Sbjct:  145 DHGAVGPVKNQGSCGSCWSFSASGALEGAHYLATGKLEVLSEQQFVDCDHECDSSEPDSCDSGCNGGLMTTAFSYLQKAGGLESEKDYPYTGSDG--KCKFDKSKIVASVQNFSVVSVDEAQISANLIKHGPLAIGINAAYMQTYIGGVSCPYICGRHLDHGVLLVGYGASGFAPIRLKDKPYWIIKNSWGENWGENGYYKICRGSNVRNKCGVDSMVSTVSA 365          
BLAST of CB293896 vs. ExPASy Swiss-Prot
Match: CYSP1_DICDI (Cysteine proteinase 1 OS=Dictyostelium discoideum GN=cprA PE=1 SV=2)

HSP 1 Score: 230.335 bits (586), Expect = 1.066e-59
Identity = 112/217 (51.61%), Postives = 144/217 (66.36%), Query Frame = -1
Query:  214 KGAVGXVKDQGSCGSCWSFSTTGALEGANFLATGKLVSLSEQQLVDCDHEC-DPEEPGSCDSGCNGGLMNSAFEYTLKAGGLMREEDYPYTGTDRGHACKFDKSKIAASVANFSVVSLDEDQIAANLVKNGPLAVAINAVYMQTYIGGVSCPYICSRRLDHGVLLVGYGSAGYAPIRLKEKPYWIIKNSWGESWGENGYYKICRGRNVCGVDSMVST 861
            +GAV  VK+QG CGSCWSFSTTG +EG +F++  KLVSLSEQ LVDCDHEC + E   +CD GCNGGL  +A+ Y +K GG+  E  YPYT  + G  C F+ + I A ++NF+++  +E  +A  +V  GPLA+A +AV  Q YIGGV         LDHG+L+VGY +     I  K  PYWI+KNSWG  WGE GY  + RG+N CGV + VST
Sbjct:  127 RGAVTPVKNQGQCGSCWSFSTTGNVEGQHFISQNKLVSLSEQNLVDCDHECMEYEGEQACDEGCNGGLQPNAYNYIIKNGGIQTESSYPYT-AETGTQCNFNSANIGAKISNFTMIPKNETVMAGYIVSTGPLAIAADAVEWQFYIGGVFDIPCNPNSLDHGILIVGYSAKN--TIFRKNMPYWIVKNSWGADWGEQGYIYLRRGKNTCGVSNFVST 340          
BLAST of CB293896 vs. ExPASy Swiss-Prot
Match: CATL_SCHMA (Cathepsin L OS=Schistosoma mansoni GN=CL1 PE=2 SV=1)

HSP 1 Score: 194.512 bits (493), Expect = 6.484e-49
Identity = 101/220 (45.91%), Postives = 140/220 (63.64%), Query Frame = -1
Query:  214 EKGAVGXVKDQGSCGSCWSFSTTGALEGANFLATGKLVSLSEQQLVDCDHECDPEEPGSCDSGCNGGLMNSAFEYTLKAGGLMREEDYPYTGTDRGHACKFDKSKIAASVANFSVVSLDEDQIAANLVKNGPLAVAINAVYMQTYIGGVSCPY--ICSR-RLDHGVLLVGYGSAGYAPIRLKEKPYWIIKNSWGESWGENGYYKICRGRNVCGVDSMVST 864
            EKGAV  VK+QG CGSCW+FSTTG +E   F  TGKL+SLSEQQLVDCD           D GCNGGL ++A+E  +K GGLM E++YPY    +   C      +A  + +   ++ DE ++AA L  N  ++V +NA+ +Q Y  G+S P+   CS+  LDH VLLVGYG      +  K +P+WI+KNSWG  WGENGY+++ RG   CG++++ ++
Sbjct:  113 EKGAVTEVKNQGMCGSCWAFSTTGNVESQWFRKTGKLLSLSEQQLVDCD---------GLDDGCNGGLPSNAYESIIKMGGLMLEDNYPYDA--KNEKCHLKTDGVAVYINSSVNLTQDETELAAWLYHNSTISVGMNALLLQFYQHGISHPWWIFCSKYLLDHAVLLVGYG------VSEKNEPFWIVKNSWGVEWGENGYFRMYRGDGSCGINTVATS 315          
BLAST of CB293896 vs. ExPASy Swiss-Prot
Match: CPR1_DROME (Putative cysteine proteinase CG12163 OS=Drosophila melanogaster GN=CG12163 PE=2 SV=2)

HSP 1 Score: 193.356 bits (490), Expect = 1.444e-48
Identity = 104/225 (46.22%), Postives = 141/225 (62.67%), Query Frame = -1
Query:  202 EKGAVGXVKDQGSCGSCWSFSTTGALEGANFLATGKLVSLSEQQLVDCDHECDPEEPGSCDSGCNGGLMNSAFEYTLKAGGLMREEDYPYTGTDRGHACKFDKSKIAASVANF-SVVSLDEDQIAANLVKNGPLAVAINAVYMQTYIGGVSCPY--ICSRR-LDHGVLLVGYGSAGYAPIRLKEKPYWIIKNSWGESWGENGYYKICRGRNVCGVDSMVSTIAAA 864
            +K AV  VK+QGSCGSCW+FS TG +EG   + TG+L   SEQ+L+DCD         + DS CNGGLM++A++     GGL  E +YPY    + + C F+++     VA F  +   +E  +   L+ NGP+++ INA  MQ Y GGVS P+  +CS++ LDHGVL+VGYG + Y P   K  PYWI+KNSWG  WGE GYY++ RG N CGV  M ++   A
Sbjct:  402 QKDAVTQVKNQGSCGSCWAFSVTGNIEGLYAVKTGELKEFSEQELLDCD---------TTDSACNGGLMDNAYKAIKDIGGLEYEAEYPYKA--KKNQCHFNRTLSHVQVAGFVDLPKGNETAMQEWLLANGPISIGINANAMQFYRGGVSHPWKALCSKKNLDHGVLVVGYGVSDY-PNFHKTLPYWIVKNSWGPRWGEQGYYRVYRGDNTCGVSEMATSAVLA 614          
BLAST of CB293896 vs. ExPASy Swiss-Prot
Match: PAPA5_CARPA (Cysteine proteinase (Fragment) OS=Carica papaya PE=3 SV=1)

HSP 1 Score: 189.119 bits (479), Expect = 2.724e-47
Identity = 84/90 (93.33%), Postives = 89/90 (98.89%), Query Frame = -1
Query:  205 GPLAVAINAVYMQTYIGGVSCPYICSRRLDHGVLLVGYGSAGYAPIRLKEKPYWIIKNSWGESWGENGYYKICRGRNVCGVDSMVSTIAA 474
            GPLAVAINA YMQTYIGGVSCPYICSRRL+HGVLLVGYGSAGYAPIRLKEKPYW+IKNSWGE+WGENGYYKICRGRN+CGVDSMVST+AA
Sbjct:    1 GPLAVAINAAYMQTYIGGVSCPYICSRRLNHGVLLVGYGSAGYAPIRLKEKPYWVIKNSWGENWGENGYYKICRGRNICGVDSMVSTVAA 90          
BLAST of CB293896 vs. ExPASy Swiss-Prot
Match: CATF_HUMAN (Cathepsin F OS=Homo sapiens GN=CTSF PE=1 SV=1)

HSP 1 Score: 182.956 bits (463), Expect = 1.952e-45
Identity = 102/219 (46.58%), Postives = 129/219 (58.90%), Query Frame = -1
Query:  214 KGAVGXVKDQGSCGSCWSFSTTGALEGANFLATGKLVSLSEQQLVDCDHECDPEEPGSCDSGCNGGLMNSAFEYTLKAGGLMREEDYPYTGTDRGHACKFDKSKIAASVANFSVVSLDEDQIAANLVKNGPLAVAINAVYMQTYIGGVSCPY--ICSRRL-DHGVLLVGYGSAGYAPIRLKEKPYWIIKNSWGESWGENGYYKICRGRNVCGVDSMVST 861
            KGAV  VKDQG CGSCW+FS TG +EG  FL  G L+SLSEQ+L+DCD           D  C GGL ++A+      GGL  E+DY Y G     +C F   K    + +   +S +E ++AA L K GP++VAINA  MQ Y  G+S P   +CS  L DH VLLVGYG+         + P+W IKNSWG  WGE GYY + RG   CGV++M S+
Sbjct:  280 KGAVTKVKDQGMCGSCWAFSVTGNVEGQWFLNQGTLLSLSEQELLDCD---------KMDKACMGGLPSNAYSAIKNLGGLETEDDYSYQG--HMQSCNFSAEKAKVYINDSVELSQNEQKLAAWLAKRGPISVAINAFGMQFYRHGISRPLRPLCSPWLIDHAVLLVGYGNR-------SDVPFWAIKNSWGTDWGEKGYYYLHRGSGACGVNTMASS 480          
BLAST of CB293896 vs. ExPASy Swiss-Prot
Match: CYSP_TRYBB (Cysteine proteinase OS=Trypanosoma brucei brucei PE=1 SV=1)

HSP 1 Score: 180.259 bits (456), Expect = 1.265e-44
Identity = 102/222 (45.95%), Postives = 133/222 (59.91%), Query Frame = -1
Query:  214 EKGAVGXVKDQGSCGSCWSFSTTGALEGANFLATGKLVSLSEQQLVDCDHECDPEEPGSCDSGCNGGLMNSAFEYTLKA--GGLMREEDYPY-TGTDRGHACKFDKSKIAASVANFSVVSLDEDQIAANLVKNGPLAVAINAVYMQTYIGGV--SCPYICSRRLDHGVLLVGYGSAGYAPIRLKEKPYWIIKNSWGESWGENGYYKICRGRNVCGVDSMVST 864
            EKGAV  VK QG CGSCW+FST G +EG   +A   LVSLSEQ LV CD         + DSGCNGGLM++AF + + +  G +  E  YPY +G      C+ +  +I A++ +   +  DED IAA L +NGPLA+A++A     Y GG+  SC    S++LDHGVLLVGY             PYWIIKNSW   WGE+GY +I +G N C ++  VS+
Sbjct:  134 EKGAVTPVKVQGQCGSCWAFSTIGNIEGQWQVAGNPLVSLSEQMLVSCD---------TIDSGCNGGLMDNAFNWIVNSNGGNVFTEASYPYVSGNGEQPQCQMNGHEIGAAITDHVDLPQDEDAIAAYLAENGPLAIAVDAESFMDYNGGILTSC---TSKQLDHGVLLVGYNDN-------SNPPYWIIKNSWSNMWGEDGYIRIEKGTNQCLMNQAVSS 336          
The following BLAST results are available for this feature:
BLAST of CB293896 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 180
Match NameE-valueIdentityDescription
A494_ARATH4.873e-11386.36Probable cysteine proteinase A494 OS=Arabidopsis t... [more]
RD19A_ARATH1.852e-11285.59Cysteine proteinase RD19a OS=Arabidopsis thaliana ... [more]
CYSP_PEA3.383e-10681.08Cysteine proteinase 15A OS=Pisum sativum PE=2 SV=1[more]
CYSP1_MAIZE7.299e-10177.58Cysteine proteinase 1 OS=Zea mays GN=CCP1 PE=2 SV=... [more]
CYSP1_DICDI1.066e-5951.61Cysteine proteinase 1 OS=Dictyostelium discoideum ... [more]
CATL_SCHMA6.484e-4945.91Cathepsin L OS=Schistosoma mansoni GN=CL1 PE=2 SV=... [more]
CPR1_DROME1.444e-4846.22Putative cysteine proteinase CG12163 OS=Drosophila... [more]
PAPA5_CARPA2.724e-4793.33Cysteine proteinase (Fragment) OS=Carica papaya PE... [more]
CATF_HUMAN1.952e-4546.58Cathepsin F OS=Homo sapiens GN=CTSF PE=1 SV=1[more]
CYSP_TRYBB1.265e-4445.95Cysteine proteinase OS=Trypanosoma brucei brucei P... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS01_06de08_b1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_06de08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB293896 ID=CB293896; Name=CB293896; organism=Citrus sinensis; type=EST; length=864bp
TTTTTTTTTTTTACACAAAGGAGTTCCACTTAATGACATAATTGAGACAT
TTCAGTTTGACACCCAGATGCAATAAGAAATCATTTCTTATGCATTGAGG
AAATTGTTTCAACATTAAAGTCGCATGCTTTATATACAAAACATCCAATG
GACCTGTATCTGCTACTATAACCTACTCCTTACTTGGAGTCAGTCACGAA
CAGCAGCAGCTATGGTCGAAACCATGGAATCGACTCCACAGACGTTGCGA
CCCCTGCATATTTTGTAGTATCCGTTCTCTCCCCAGCTCTCACCCCATGA
ATTCTTGATGATCCAGTATGGCTTCTCCTTCAACCTGATTGGAGCATAGC
CAGCTGAACCGTATCCCACGAGCAACACTCCATGGTCCAATCGCCTCGAG
CATATGTATGGGCAGGAAACTCCCCCAATGTATGTCTGCATGTACACGGC
ATTGATGGCCACTGCAAGGGGACCATTTTTCACAAGATTGGCAGCAATTT
GATCCTCATCAAGGGAGACAACACTGAAGTTGGCCACTGAGGCAGCAATC
TTACTCTTATCGAATTTGCAGGCGTGGCCACGATCAGTGCCGGTGTAAGG
ATAGTCTTCCTCCCGCATAAGCCCACCAGCCTTGAGTGTGTACTCAAAAG
CACTGTTCATAAGCCCACCATTGCATCCAGAATCACAAGAACCTGGTTCC
TCAGGATCACACTCATGATCGCAATCCACAAGCTGTTGCTCACTGAGGCT
CACAAGCTTTCCAGTTGCCAGGAAGTTAGCACCTTCCAAGGCCCCTGTTG
TACTGAAACTCCAGCATGATCCGCATGAACCCTGATCTTTAACANGGCCT
ACAGCGCCCTTCTC
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