CB293898

Overview
NameCB293898
Unique NameCB293898
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length662
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CB293898 vs. ExPASy Swiss-Prot
Match: PIP11_ORYSJ (Aquaporin PIP1-1 OS=Oryza sativa subsp. japonica GN=PIP1-1 PE=2 SV=1)

HSP 1 Score: 155.992 bits (393), Expect = 1.610e-37
Identity = 77/112 (68.75%), Postives = 82/112 (73.21%), Query Frame = -3 
Query:  325 KGDGFGAEIIGTFVFVYTVFFAPDAKRRARDFHVPILAPLPIGFAGFLVPLGPIPITGTGINPARSFGGAIIFNKDRGWDDPWIFWXXXXXXXXXXXXXPQVVIRAIPFK*R 660
            KGDG GAEI+GTF+ VYTVF A DAKR ARD HVPILAPLPIGFA FLV L  IPITGTGINPARS G AII+NKD  W+D WIFW              QV+IRAIPFK R
Sbjct:  177 KGDGLGAEIVGTFILVYTVFSATDAKRNARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIYNKDHAWNDHWIFWVGPFVGAALAAIYHQVIIRAIPFKSR 288
[Close]
BLAST of CB293898 vs. ExPASy Swiss-Prot
Match: PIP14_ARATH (Probable aquaporin PIP1-4 OS=Arabidopsis thaliana GN=PIP1.4 PE=1 SV=1)

HSP 1 Score: 155.606 bits (392), Expect = 2.103e-37
Identity = 78/110 (70.91%), Postives = 80/110 (72.73%), Query Frame = -3 
Query:  331 KGDGFGAEIIGTFVFVYTVFFAPDAKRRARDFHVPILAPLPIGFAGFLVPLGPIPITGTGINPARSFGGAIIFNKDRGWDDPWIFWXXXXXXXXXXXXXPQVVIRAIPFK 660
            KG G GAEIIGTFV VYTVF A DAKR ARD HVPILAPLPIGFA FLV L  IPITGTGINPARS G AII+NKD  WDD WIFW              Q+VIRAIPFK
Sbjct:  175 KGSGLGAEIIGTFVLVYTVFSATDAKRSARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIYNKDHSWDDHWIFWVGPFIGAALAALYHQIVIRAIPFK 284
[Close]
BLAST of CB293898 vs. ExPASy Swiss-Prot
Match: PIP15_ARATH (Probable aquaporin PIP1-5 OS=Arabidopsis thaliana GN=PIP1-5 PE=2 SV=2)

HSP 1 Score: 155.221 bits (391), Expect = 2.746e-37
Identity = 77/110 (70.00%), Postives = 80/110 (72.73%), Query Frame = -3 
Query:  331 KGDGFGAEIIGTFVFVYTVFFAPDAKRRARDFHVPILAPLPIGFAGFLVPLGPIPITGTGINPARSFGGAIIFNKDRGWDDPWIFWXXXXXXXXXXXXXPQVVIRAIPFK 660
            KG G GAEI+GTFV VYTVF A DAKR ARD HVPILAPLPIGFA FLV L  IPITGTGINPARS G AII+NKD  WDD WIFW              Q+VIRAIPFK
Sbjct:  175 KGSGLGAEIVGTFVLVYTVFSATDAKRSARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIYNKDHAWDDHWIFWVGPFIGAALAALYHQIVIRAIPFK 284
[Close]
BLAST of CB293898 vs. ExPASy Swiss-Prot
Match: PIP13_ARATH (Aquaporin PIP1-3 OS=Arabidopsis thaliana GN=PIP1-3 PE=1 SV=1)

HSP 1 Score: 155.221 bits (391), Expect = 2.746e-37
Identity = 79/112 (70.54%), Postives = 81/112 (72.32%), Query Frame = -3 
Query:  325 KGDGFGAEIIGTFVFVYTVFFAPDAKRRARDFHVPILAPLPIGFAGFLVPLGPIPITGTGINPARSFGGAIIFNKDRGWDDPWIFWXXXXXXXXXXXXXPQVVIRAIPFK*R 660
            KG G GAEIIGTFV VYTVF A DAKR ARD HVPILAPLPIGFA FLV L  IPITGTGINPARS G AII+NKD  WDD WIFW              Q+VIRAIPFK R
Sbjct:  174 KGSGLGAEIIGTFVLVYTVFSATDAKRSARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIYNKDHAWDDHWIFWVGPFIGAALAALYHQLVIRAIPFKSR 285
[Close]
BLAST of CB293898 vs. ExPASy Swiss-Prot
Match: PIP2_PEA (Probable aquaporin PIP-type 7a OS=Pisum sativum GN=TRG-31 PE=2 SV=2)

HSP 1 Score: 154.836 bits (390), Expect = 3.587e-37
Identity = 77/110 (70.00%), Postives = 81/110 (73.64%), Query Frame = -3 
Query:  331 KGDGFGAEIIGTFVFVYTVFFAPDAKRRARDFHVPILAPLPIGFAGFLVPLGPIPITGTGINPARSFGGAIIFNKDRGWDDPWIFWXXXXXXXXXXXXXPQVVIRAIPFK 660
            KGDG GAEI+GTF+ VYTVF A DAKR ARD HVPILAPLPIGFA FLV L  IPITGTGINPARS G AI+FNK  GW+D WIFW              QVVIRAIPFK
Sbjct:  178 KGDGLGAEIVGTFILVYTVFSATDAKRSARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIVFNKKIGWNDHWIFWVGPFIGAALAALYHQVVIRAIPFK 287
[Close]
BLAST of CB293898 vs. ExPASy Swiss-Prot
Match: PIP12_MAIZE (Aquaporin PIP1-2 OS=Zea mays GN=PIP1-2 PE=1 SV=1)

HSP 1 Score: 154.836 bits (390), Expect = 3.587e-37
Identity = 76/112 (67.86%), Postives = 82/112 (73.21%), Query Frame = -3 
Query:  325 KGDGFGAEIIGTFVFVYTVFFAPDAKRRARDFHVPILAPLPIGFAGFLVPLGPIPITGTGINPARSFGGAIIFNKDRGWDDPWIFWXXXXXXXXXXXXXPQVVIRAIPFK*R 660
            KGDG GAEI+GTF+ VYTVF A DAKR ARD HVPILAPLPIGFA FLV L  IPITGTGINPARS G AII+N+D  W+D WIFW              QV+IRAIPFK R
Sbjct:  177 KGDGLGAEIVGTFILVYTVFSATDAKRNARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIYNRDHAWNDHWIFWVGPFIGAALAAIYHQVIIRAIPFKSR 288
[Close]
BLAST of CB293898 vs. ExPASy Swiss-Prot
Match: PIP13_MAIZE (Aquaporin PIP1-3/PIP1-4 OS=Zea mays GN=PIP1-3 PE=2 SV=1)

HSP 1 Score: 154.451 bits (389), Expect = 4.685e-37
Identity = 76/112 (67.86%), Postives = 81/112 (72.32%), Query Frame = -3 
Query:  325 KGDGFGAEIIGTFVFVYTVFFAPDAKRRARDFHVPILAPLPIGFAGFLVPLGPIPITGTGINPARSFGGAIIFNKDRGWDDPWIFWXXXXXXXXXXXXXPQVVIRAIPFK*R 660
            KGDG GAEI+GTF+ VYTVF A DAKR ARD HVPILAPLPIGFA FLV L  IPITGTGINPARS G AII+N+D  W D WIFW              QV+IRAIPFK R
Sbjct:  180 KGDGLGAEIVGTFILVYTVFSATDAKRNARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIYNRDHAWSDHWIFWVGPFIGAALAAIYHQVIIRAIPFKSR 291
[Close]
BLAST of CB293898 vs. ExPASy Swiss-Prot
Match: PIP12_ORYSJ (Probable aquaporin PIP1-2 OS=Oryza sativa subsp. japonica GN=PIP1-2 PE=2 SV=3)

HSP 1 Score: 154.451 bits (389), Expect = 4.685e-37
Identity = 77/112 (68.75%), Postives = 81/112 (72.32%), Query Frame = -3 
Query:  325 KGDGFGAEIIGTFVFVYTVFFAPDAKRRARDFHVPILAPLPIGFAGFLVPLGPIPITGTGINPARSFGGAIIFNKDRGWDDPWIFWXXXXXXXXXXXXXPQVVIRAIPFK*R 660
            KGDG GAEI+GTF+ VYTVF A DAKR ARD HVPILAPLPIGFA FLV L  IPITGTGINPARS G AII+N+   WDD WIFW              QVVIRAIPFK R
Sbjct:  176 KGDGLGAEIVGTFILVYTVFSATDAKRNARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIYNRGHAWDDHWIFWVGPFIGAALAAIYHQVVIRAIPFKSR 287
[Close]
BLAST of CB293898 vs. ExPASy Swiss-Prot
Match: PIP12_ARATH (Aquaporin PIP1-2 OS=Arabidopsis thaliana GN=PIP1-2 PE=1 SV=1)

HSP 1 Score: 154.451 bits (389), Expect = 4.685e-37
Identity = 78/112 (69.64%), Postives = 80/112 (71.43%), Query Frame = -3 
Query:  325 KGDGFGAEIIGTFVFVYTVFFAPDAKRRARDFHVPILAPLPIGFAGFLVPLGPIPITGTGINPARSFGGAIIFNKDRGWDDPWIFWXXXXXXXXXXXXXPQVVIRAIPFK*R 660
            KG G GAEIIGTFV VYTVF A DAKR ARD HVPILAPLPIGFA FLV L  IPITGTGINPARS G AIIFNKD  WDD W+FW               +VIRAIPFK R
Sbjct:  174 KGSGLGAEIIGTFVLVYTVFSATDAKRNARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIFNKDNAWDDHWVFWVGPFIGAALAALYHVIVIRAIPFKSR 285
[Close]
BLAST of CB293898 vs. ExPASy Swiss-Prot
Match: PIP11_VICFA (Aquaporin PIP1.1 OS=Vicia faba GN=PIP1.1 PE=2 SV=1)

HSP 1 Score: 153.68 bits (387), Expect = 7.991e-37
Identity = 78/112 (69.64%), Postives = 80/112 (71.43%), Query Frame = -3 
Query:  325 KGDGFGAEIIGTFVFVYTVFFAPDAKRRARDFHVPILAPLPIGFAGFLVPLGPIPITGTGINPARSFGGAIIFNKDRGWDDPWIFWXXXXXXXXXXXXXPQVVIRAIPFK*R 660
            KG G GAEIIGTFV VYTVF A DAKR ARD HVPILAPLPIGFA FLV L  IPITGTGINPARS G AII+NKD  WDD W+FW               VVIRAIPFK R
Sbjct:  174 KGSGLGAEIIGTFVLVYTVFSATDAKRNARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIYNKDHSWDDHWVFWVGPFIGAALAALYHVVVIRAIPFKSR 285
The following BLAST results are available for this feature:
BLAST of CB293898 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 40
Match NameE-valueIdentityDescription
PIP11_ORYSJ1.610e-3768.75Aquaporin PIP1-1 OS=Oryza sativa subsp. japonica G... [more]
PIP14_ARATH2.103e-3770.91Probable aquaporin PIP1-4 OS=Arabidopsis thaliana ... [more]
PIP15_ARATH2.746e-3770.00Probable aquaporin PIP1-5 OS=Arabidopsis thaliana ... [more]
PIP13_ARATH2.746e-3770.54Aquaporin PIP1-3 OS=Arabidopsis thaliana GN=PIP1-3... [more]
PIP2_PEA3.587e-3770.00Probable aquaporin PIP-type 7a OS=Pisum sativum GN... [more]
PIP12_MAIZE3.587e-3767.86Aquaporin PIP1-2 OS=Zea mays GN=PIP1-2 PE=1 SV=1[more]
PIP13_MAIZE4.685e-3767.86Aquaporin PIP1-3/PIP1-4 OS=Zea mays GN=PIP1-3 PE=2... [more]
PIP12_ORYSJ4.685e-3768.75Probable aquaporin PIP1-2 OS=Oryza sativa subsp. j... [more]
PIP12_ARATH4.685e-3769.64Aquaporin PIP1-2 OS=Arabidopsis thaliana GN=PIP1-2... [more]
PIP11_VICFA7.991e-3769.64Aquaporin PIP1.1 OS=Vicia faba GN=PIP1.1 PE=2 SV=1[more]

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Properties
Property NameValue
Genbank descriptionUCRCS01_06de09_b1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_06de09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB293898 ID=CB293898; Name=CB293898; organism=Citrus sinensis; type=EST; length=662bp
TTTTTTTTTTTTTTTTTCTTAAAGAAAAAAAACTAGTTTTGGCCATATTA
TTACCAAAATGACATTGCCCAAATCCCCAGCCATACAAATGTACAAAGGG
ACAGCCCCCCCCTACTTAGCCATGGGCCCATCCGTCATCATCATCGACCT
CTCTTCAAAAAAAAAAAAAAAACGTTTTAAGGAAGGAAAACACAAAAGCA
GGTCCAGGTCCACCACCAGCAAATTTGAACAAAGGACTAATTAATATTTT
ATAATACACATAAGCAAACCACCAACAGCCATAAAAAAATGCGGGGGCAA
TCCCAAACGTCAATGAAGCGATCACCTTCATTTGAAGGGAATGGCTCTGA
TCACAACTTGGGGGAAAAAAGCTGCAAGTCCAGCTCCAAAAAATGGTCCC
CCCCAAAAAATCCAGGGGTCATCCCAACCCCGGTCCTTGTTGAAAATGAT
TGCACCTCCAAAACTCCTCGCTGGGTTGATGCCAGTTCCGGTAATTGGGA
TGGGACCCAAGGGAACCAAAAACCCAGCGAACCCAATTGGCAGAGGAGCC
AAAATAGGAACATGAAAGTCCCTGGCCCTCCGTTTGGCATCAGGGGCAAA
AAAAACTGTGTAAACAAAAACAAAAGTACCAATAATCTCGGCACCAAAAC
CATCCCCCTTGG
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