CB293901

Overview
NameCB293901
Unique NameCB293901
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length869
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig8756 contig Csv1_Contig8756:185..1053. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB293901 vs. ExPASy Swiss-Prot
Match: MINP1_HUMAN (Multiple inositol polyphosphate phosphatase 1 OS=Homo sapiens GN=MINPP1 PE=1 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 9.206e-11
Identity = 39/144 (27.08%), Postives = 72/144 (50.00%), Query Frame = -2
Query:  437 LLEWTDDLEVFILKGYGKSLNYRMGVPLLEDIVQSMEQAIKAKEEKHTPGNYEKARLRFAHAETVIPFTCLLGLFLERSEFQQIXXXXXXXXXXXXXQSRNWRGSILAPFTGNNMLVLYSC--PANSSDKYFVQVLHNERPTPM 862
            +LE+ +DL+ +  +GYG ++N R    L +DI Q +++A++ K+      +     L+F HAET++P   L+G F ++                     R +R  ++ P+  N + VLY C       +++ VQ+L NE+  P+
Sbjct:  312 VLEYLNDLKQYWKRGYGYTINSRSSCTLFQDIFQHLDKAVEQKQRSQPISS--PVILQFGHAETLLPLLSLMGYFKDKEPL--------TAYNYKKQMHRKFRSGLIVPYASNLIFVLYHCENAKTPKEQFRVQMLLNEKVLPL 445          
The following BLAST results are available for this feature:
BLAST of CB293901 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
MINP1_HUMAN9.206e-1127.08Multiple inositol polyphosphate phosphatase 1 OS=H... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS01_06de11_b1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_06de11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB293901 ID=CB293901; Name=CB293901; organism=Citrus sinensis; type=EST; length=869bp
TTTTTTTTTTTTTTTTAAACTTCAGGTAGGAATATGGAATTGAACCATCA
AAGTTCTATTGTGATTAGCGGCAAAATTGTTATTGCTTATATAGGTTAGA
AGTGGATTCATTCCAAAATGGAACTCTGCTAGGAGGAGCTGGCCATGGCT
GAAAATCACATCAAGGAGTGCCAACAACGAAAAAAGCATGTAAGAAAATA
CAACCTTTTCTTAGTTTAAAAATAAACTACAACTCTACTTTGTGAGATTG
GGTATCATCATTCCACCGTGGGAACAGCCAATGAAGCAGTAGTGACAACT
TACTAGTTTTAGACTTATGTATTGCTTGTTCCGTCTGAACATTACAGAGC
GTATTGTAGTCATACTTTAAATGTGGAGCAACAATTCTTTCCTTAAAAAC
ATCAAATGGACAGAAATCTGTACCATTGCAACCTGGCATTGGAGTCGGAC
GTTCATTGTGCAATACTTGTACAAAGTACTTGTCGGAAGAGTTGGCAGGA
CAGCTGTACAGAACCAGCATGTTATTCCCAGTAAAGGGTGCCAGAATGCT
GCCTCTCCAATTTCTACTCTGGGGAGGCTTTGGCGGGAGTGCCAAGGGTT
CTTCCTTTTGTATTTGTTGGAATTCAGATCTTTCAAGGAAAAGTCCAAGC
AAACAAGTGAAAGGAATCACAGTTTCCGCATGTGCAAACCGAAGTCTCGC
CTTTTCATAATTTCCAGGAGTATGTTTCTCTTCTTTAGCCTTAATAGCTT
GTTCCATTGATTGAACAATGTCCTCAAGCAGAGGAACTCCCATTCGATAA
TTTAATGATTTACCATAACCCTTCAATATAAACACCTCTAAGTCATCTGT
CCACTCCAGCAAAGCAACC
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