CB293960

Overview
NameCB293960
Unique NameCB293960
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length737
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig7121 contig Csv1_Contig7121:49..785. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB293960 vs. ExPASy Swiss-Prot
Match: PPR4_ARATH (Pentatricopeptide repeat-containing protein At1g02370, mitochondrial OS=Arabidopsis thaliana GN=At1g02370 PE=2 SV=1)

HSP 1 Score: 228.024 bits (580), Expect = 4.065e-59
Identity = 118/226 (52.21%), Postives = 151/226 (66.81%), Query Frame = 3
Query:   60 LVRQLCSTPTETVSQRIAAPTPFPTGNEDKLYKRLSALGATGGSVTGALNAYIMEGKTVRKDMLEYCVRSLRKFGRYRHALEVIEWMESRKIHFSYTDFAVYLDLTAKTKGIAAAEEYFNGLSEYAKN-RYTYGALLNCYCKELMTERALALFEKMDELKFLGNTVAFNNLSTMYLRLGQPEKVRPLVNQMKQRNISLDNLTYIVWMQSYSHLNDIDGVERVSYEM 734
            +V    S+P      R +   P     + +LYK+LS L  TGG+V   LN +IMEG TVRKD L  C ++LRKF R +HA E+ +WME RK+ FS +D A+ LDL  KTKG+ AAE YFN L   AKN + TYGAL+NCYC EL  E+A A FE MDEL F+ N++ FNN+ +MY+RL QPEKV  LV+ MKQR IS   +TY +WMQS   LND+DG+E++  EM
Sbjct:   43 VVEASVSSPAAENGVRTSVAAPTVASRQRELYKKLSMLSVTGGTVAETLNQFIMEGITVRKDDLFRCAKTLRKFRRPQHAFEIFDWMEKRKMTFSVSDHAICLDLIGKTKGLEAAENYFNNLDPSAKNHQSTYGALMNCYCVELEEEKAKAHFEIMDELNFVNNSLPFNNMMSMYMRLSQPEKVPVLVDAMKQRGISPCGVTYSIWMQSCGSLNDLDGLEKIIDEM 268          
BLAST of CB293960 vs. ExPASy Swiss-Prot
Match: PP300_ARATH (Pentatricopeptide repeat-containing protein At4g01990, mitochondrial OS=Arabidopsis thaliana GN=At4g01990 PE=2 SV=1)

HSP 1 Score: 193.356 bits (490), Expect = 1.109e-48
Identity = 105/236 (44.49%), Postives = 149/236 (63.14%), Query Frame = 3
Query:   39 LLSTGSYLVRQLCST---PTETVSQRIAAPTPFPTGNEDKLYKRLSALGATGGS-VTGALNAYIMEGKTVRKDMLEYCVRSLRKFGRYRHALEVIEWMESRKIHFSYTDFAVYLDLTAKTKGIAAAEEYFNGLSEYAKNRYTYGALLNCYCKELMTERALALFEKMDELKFLGNTVAFNNLSTMYLRLGQPEKVRPLVNQMKQRNISLDNLTYIVWMQSYSHLNDIDGVERVSYEM 734
            ++ + S L R+ C+T    T  +S   AA  P        +YK+LS+LG  GG  +   LN ++MEG  V+K  L    + LRKF + + ALE+ EWME ++I F+ +D A+ L+L AK+KG+ AAE YFN L +  KN+ TYG+LLNCYC E    +A A FE M +L  + N++ FNNL  MY+ LGQPEKV  LV  MK+++I+  ++TY +W+QS   L D+DGVE+V  EM
Sbjct:    1 MMHSVSRLARRFCATLATATAEISGEAAASVPTKAKKHRSIYKKLSSLGTRGGGKMEETLNQFVMEGVPVKKHDLIRYAKDLRKFRQPQRALEIFEWMERKEIAFTGSDHAIRLNLIAKSKGLEAAETYFNSLDDSIKNQSTYGSLLNCYCVEKEEVKAKAHFENMVDLNHVSNSLPFNNLMAMYMGLGQPEKVPALVVAMKEKSITPCDITYSMWIQSCGSLKDLDGVEKVLDEM 236          
BLAST of CB293960 vs. ExPASy Swiss-Prot
Match: PPR86_ARATH (Pentatricopeptide repeat-containing protein At1g60770 OS=Arabidopsis thaliana GN=At1g60770 PE=2 SV=1)

HSP 1 Score: 156.377 bits (394), Expect = 1.503e-37
Identity = 84/198 (42.42%), Postives = 121/198 (61.11%), Query Frame = 3
Query:  141 EDKLYKRLSALGATGGSVTGALNAYIMEGKTVRKDMLEYCVRSLRKFGRYRHALEVIEWMESRKIHFSYTDFAVYLDLTAKTKGIAAAEEYFNGLSEYAKNRYTYGALLNCYCKELMTERALALFEKMDELKFLGNTVAFNNLSTMYLRLGQPEKVRPLVNQMKQRNISLDNLTYIVWMQSYSHLNDIDGVERVSYEM 734
            E+ LY RL   G T   V   LN ++   K V K  +   ++ LR  G Y  AL++ E ME R ++ + +D A++LDL AK + I A E YF  L E +K   TYG+LLNCYCKEL+TE+A  L  KM EL    +++++N+L T+Y + G+ EKV  ++ ++K  N+  D+ TY VWM++ +  NDI GVERV  EM
Sbjct:   22 EEPLYNRLFKDGGTEVKVRQQLNQFLKGTKHVFKWEVGDTIKKLRNRGLYYPALKLSEVMEERGMNKTVSDQAIHLDLVAKAREITAGENYFVDLPETSKTELTYGSLLNCYCKELLTEKAEGLLNKMKELNITPSSMSYNSLMTLYTKTGETEKVPAMIQELKAENVMPDSYTYNVWMRALAATNDISGVERVIEEM 219          
BLAST of CB293960 vs. ExPASy Swiss-Prot
Match: PP334_ARATH (Pentatricopeptide repeat-containing protein At4g21705, mitochondrial OS=Arabidopsis thaliana GN=At4g21705 PE=2 SV=1)

HSP 1 Score: 139.043 bits (349), Expect = 2.483e-32
Identity = 74/189 (39.15%), Postives = 113/189 (59.79%), Query Frame = 3
Query:  150 LYKRLSALGATGGSVTGALNAYIMEGKTVRKDMLEYCVRSLRKFGRYRHALEVIEWM-ESRKIHFSYTDFAVYLDLTAKTKGIAAAEEYFNGLSEYAKNRYTYGALLNCYCKELMTERALALFEKMDELKFLGNTVAFNNLSTMYLRLGQPEKVRPLVNQMKQRNISLDNLTYIVWMQSYSHLNDIDGV 713
            LY ++S LG    SV   L  ++  GK V    L   V  LR+  R+ HALEV +WM E+    FS T+ AV+LDL  +  G   AEEYF  L E  KN  TYGALLNCY ++   E++L  FEKM E+ F+ +++ +NN+  +Y  +GQ EKV  ++ +MK+ N++ DN +Y + + ++  + D++ +
Sbjct:   27 LYSKISPLGDPKSSVYPELQNWVQCGKKVSVAELIRIVHDLRRRKRFLHALEVSKWMNETGVCVFSPTEHAVHLDLIGRVYGFVTAEEYFENLKEQYKNDKTYGALLNCYVRQQNVEKSLLHFEKMKEMGFVTSSLTYNNIMCLYTNIGQHEKVPKVLEEMKEENVAPDNYSYRICINAFGAMYDLERI 215          
BLAST of CB293960 vs. ExPASy Swiss-Prot
Match: PP302_ARATH (Pentatricopeptide repeat-containing protein At4g02820, mitochondrial OS=Arabidopsis thaliana GN=At4g02820 PE=2 SV=1)

HSP 1 Score: 131.339 bits (329), Expect = 5.178e-30
Identity = 74/197 (37.56%), Postives = 119/197 (60.41%), Query Frame = 3
Query:  135 GNEDKLYKRLSALGATGGSVTGALNAYIMEGKTVRKDMLEYCVRSLRKFGRYRHALEVIEWMESRK-IHFSYTDFAVYLDLTAKTKGIAAAEEYFNGLSEYAKNRYTYGALLNCYCKELMTERALALFEKMDELKFLGNTVAFNNLSTMYLRLGQPEKVRPLVNQMKQRNISLDNLTYIVWMQSYSHLNDIDGVERV 722
            G  D L  RL +L  T  S    +  +  EG +VRK  L   VR LRK  RY+HALE+ EWM  ++ I     D+AV+LDL +K +G+ +AE++F  + +  +      +LL+ Y +  ++++A ALFEKM E  FL + + +N++ +MY+  GQ EKV  L+ ++K R  S D +TY +W+ +++  ND++G E+V
Sbjct:   58 GGRDTLGGRLLSLVYTKRSAVVTIRKWKEEGHSVRKYELNRIVRELRKIKRYKHALEICEWMVVQEDIKLQAGDYAVHLDLISKIRGLNSAEKFFEDMPDQMRGHAACTSLLHSYVQNKLSDKAEALFEKMGECGFLKSCLPYNHMLSMYISRGQFEKVPVLIKELKIRT-SPDIVTYNLWLTAFASGNDVEGAEKV 253          
BLAST of CB293960 vs. ExPASy Swiss-Prot
Match: PP166_ARATH (Pentatricopeptide repeat-containing protein At2g20710, mitochondrial OS=Arabidopsis thaliana GN=At2g20710 PE=2 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 6.762e-30
Identity = 65/201 (32.34%), Postives = 113/201 (56.22%), Query Frame = 3
Query:  120 TPFPTGNEDKLYKRLSALGATGGSVTGALNAYIMEGKTVRKDMLEYCVRSLRKFGRYRHALEVIEWMESRKIH-FSYTDFAVYLDLTAKTKGIAAAEEYFNGLSEYAKNRYTYGALLNCYCKELMTERALALFEKMDELKFLGNTVAFNNLSTMYLRLGQPEKVRPLVNQMKQRNISLDNLTYIVWMQSYSHLNDIDGVER 719
            TP P    D L +R++  G    S+   L+ ++ +G  V+   L   ++ LRKF R+ HAL++ +WM   ++H  S  D A+ LDL AK  G+  AE++F  +    +N + YGALLNCY  + +  +A  +F++M EL FL   + +N +  +Y+R G+   V  L+ +M+   +  D  T    + +YS ++D++G+E+
Sbjct:   30 TPSPLDPYDTLQRRVARSGDPSASIIKVLDGWLDQGNLVKTSELHSIIKMLRKFSRFSHALQISDWMSEHRVHEISEGDVAIRLDLIAKVGGLGEAEKFFETIPMERRNYHLYGALLNCYASKKVLHKAEQVFQEMKELGFLKGCLPYNVMLNLYVRTGKYTMVEKLLREMEDETVKPDIFTVNTRLHAYSVVSDVEGMEK 230          
BLAST of CB293960 vs. ExPASy Swiss-Prot
Match: PP372_ARATH (Pentatricopeptide repeat-containing protein At5g09450, mitochondrial OS=Arabidopsis thaliana GN=At5g09450 PE=2 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 3.141e-27
Identity = 74/202 (36.63%), Postives = 111/202 (54.95%), Query Frame = 3
Query:  141 EDKLYKRLSALGATGGSVTGALNAYIMEGKTVRKDMLEYCVRSLRKFGRYRHALEVIEWM-ESRKIHFSYTDFAVYLDLTAKTKGIAAAEEYFNGLSEYAKNRYTYGALLNCYCKELMTERALALFEKM---DELKFLGNTVAFNNLSTMYLRLGQPEKVRPLVNQMKQRNISLDNLTYIVWMQSYSHLNDIDGVERVSYEM 734
            +D L  R+  L     S T  L  +I EG  +  + L    + LR+  RY+HALEV EWM +  +   S  D+A  +DL +K  GI AAE YF GL   +K   TY +LL+ Y     TERA ALF+++   D L F    + +N + T+Y+ +GQ EKV  ++  +KQ+ +S D  TY +W+ S +   +ID + ++  EM
Sbjct:   54 KDDLKSRIFRLRLPKRSATTVLEKWIGEGNQMTINELREISKELRRTRRYKHALEVTEWMVQHEESKISDADYASRIDLISKVFGIDAAERYFEGLDIDSKTAETYTSLLHAYAASKQTERAEALFKRIIESDSLTF--GAITYNEMMTLYMSVGQVEKVPEVIEVLKQKKVSPDIFTYNLWLSSCAATFNIDELRKILEEM 253          
BLAST of CB293960 vs. ExPASy Swiss-Prot
Match: PPR3_ARATH (Pentatricopeptide repeat-containing protein At1g02150 OS=Arabidopsis thaliana GN=At1g02150 PE=2 SV=2)

HSP 1 Score: 119.783 bits (299), Expect = 1.559e-26
Identity = 69/197 (35.03%), Postives = 109/197 (55.33%), Query Frame = 3
Query:  150 LYKRLSALGATGGSVTGALNAYIMEGKTVRKDMLEYCVRSLRKFGRYRHALEVIEWMESR--KIHFSYTDFAVYLDLTAKTKGIAAAEEYFNGLSEYAKNRYTYGALLNCYCKELMTERALALFEKMDELKFLGNTVAFNNLSTMYLRLGQPEKVRPLVNQMKQRNISLDNLTYIVWMQSYSHLNDIDGVERVSYEM 734
            +YK++S +          LN +   G+ + K  L   V+ LRK+ R   ALEV +WM +R  +   S +D A+ LDL  K +GI  AEE+F  L E  K+R  YG+LLN Y +    E+A AL   M +  +  + + FN + T+Y+ L + +KV  +V +MKQ++I LD  +Y +W+ S   L  ++ +E V  +M
Sbjct:   69 IYKKISLMEKPELGAASVLNQWEKAGRKLTKWELCRVVKELRKYKRANQALEVYDWMNNRGERFRLSASDAAIQLDLIGKVRGIPDAEEFFLQLPENFKDRRVYGSLLNAYVRAKSREKAEALLNTMRDKGYALHPLPFNVMMTLYMNLREYDKVDAMVFEMKQKDIRLDIYSYNIWLSSCGSLGSVEKMELVYQQM 265          
BLAST of CB293960 vs. ExPASy Swiss-Prot
Match: PP400_ARATH (Pentatricopeptide repeat-containing protein At5g27460 OS=Arabidopsis thaliana GN=At5g27460 PE=2 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 5.738e-21
Identity = 69/187 (36.90%), Postives = 95/187 (50.80%), Query Frame = 3
Query:  189 SVTGALNAYIMEGKTVRKDMLEYCVRSLRKFGRYRHALEVIEWMESRK-IHFSYTDFAVYLDLTAKTKGIAAAEEYFNGLSEYAKN----RYTYGALLNCYCKELMTERALALFEKMDELKFLGNTVAFNNLSTMYLRLGQPEKVRPLVNQMKQRNISLDNLTYIVWMQSYSHLNDIDGVERVSYEM 734
            SVT  L   I  G  V    L    + L +  RY  AL+++EWME++K I FS  D A+ LDL  KT G+   EEYF  L   + +    +  Y  LL  Y K  M + A AL EK++ L FL     FN +  +Y   GQ EKV  +V+ MK   I  + L+Y +WM +   ++ +  VE V  EM
Sbjct:   53 SVTSLLQERIDSGHAVSLSELRLISKRLIRSNRYDLALQMMEWMENQKDIEFSVYDIALRLDLIIKTHGLKQGEEYFEKLLHSSVSMRVAKSAYLPLLRAYVKNKMVKEAEALMEKLNGLGFLVTPHPFNEMMKLYEASGQYEKVVMVVSMMKGNKIPRNVLSYNLWMNACCEVSGVAAVETVYKEM 239          
BLAST of CB293960 vs. ExPASy Swiss-Prot
Match: PPR61_ARATH (Putative pentatricopeptide repeat-containing protein At1g28020 OS=Arabidopsis thaliana GN=At1g28020 PE=3 SV=2)

HSP 1 Score: 82.0333 bits (201), Expect = 3.602e-15
Identity = 53/174 (30.46%), Postives = 87/174 (50.00%), Query Frame = 3
Query:  204 LNAYIMEGKTVRKDMLEYCVRSLRKFGRYRHALEVIEWMESRKI-HFSYTDFAVYLDLTAKTKGIAAAEEYFNGLSEYAKNRYTYGALLNCYCKELMTE-RALALFEKMDELKFLGNTVAFNNLSTMYLRLGQPEKVRPLVNQMKQRNISLDNLTYIVWMQSYSHLNDIDGVER 719
            L  +  +G  V    +   ++ LR   +   AL+V EWM   KI +    DFA  L L     G+  AE++F  + + A+    Y +LLN Y +   T  +A A F+KM +L  L   V +N + ++Y  L   EKV  L+ +MK  ++  DN+T    ++ YS + D+  +E+
Sbjct:   56 LEQWRQQGNQVNPSHVRVIIKKLRDSDQSLQALQVSEWMSKEKICNLIPEDFAARLHLIENVVGLEEAEKFFESIPKNARGDSVYTSLLNSYARSDKTLCKAEATFQKMRDLGLLLRPVPYNAMMSLYSALKNREKVEELLLEMKDNDVEADNVTVNNVLKLYSAVCDVTEMEK 229          
The following BLAST results are available for this feature:
BLAST of CB293960 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 13
Match NameE-valueIdentityDescription
PPR4_ARATH4.065e-5952.21Pentatricopeptide repeat-containing protein At1g02... [more]
PP300_ARATH1.109e-4844.49Pentatricopeptide repeat-containing protein At4g01... [more]
PPR86_ARATH1.503e-3742.42Pentatricopeptide repeat-containing protein At1g60... [more]
PP334_ARATH2.483e-3239.15Pentatricopeptide repeat-containing protein At4g21... [more]
PP302_ARATH5.178e-3037.56Pentatricopeptide repeat-containing protein At4g02... [more]
PP166_ARATH6.762e-3032.34Pentatricopeptide repeat-containing protein At2g20... [more]
PP372_ARATH3.141e-2736.63Pentatricopeptide repeat-containing protein At5g09... [more]
PPR3_ARATH1.559e-2635.03Pentatricopeptide repeat-containing protein At1g02... [more]
PP400_ARATH5.738e-2136.90Pentatricopeptide repeat-containing protein At5g27... [more]
PPR61_ARATH3.602e-1530.46Putative pentatricopeptide repeat-containing prote... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS01_06dh08_g1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_06dh08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB293960 ID=CB293960; Name=CB293960; organism=Citrus sinensis; type=EST; length=737bp
GCCCTAAGCGGAAGATGATGATTCGCAATCAAAGCCGTCTGCTATCAACC
GGATCGTATCTCGTGAGGCAATTATGTAGCACGCCAACGGAAACAGTTTC
GCAAAGGATAGCCGCGCCGACGCCGTTTCCGACCGGAAATGAAGATAAAC
TGTACAAGAGGCTGTCGGCTCTCGGAGCCACCGGAGGCAGCGTGACCGGG
GCGCTAAATGCGTACATAATGGAGGGTAAAACCGTCAGAAAAGATATGCT
CGAATATTGCGTCCGGAGCCTCCGCAAATTTGGCCGCTACCGTCATGCAC
TTGAGGTCATTGAATGGATGGAGAGTCGGAAAATACATTTCTCTTACACT
GACTTTGCAGTATATCTAGATCTTACGGCAAAAACCAAAGGGATAGCTGC
TGCTGAAGAGTACTTCAATGGCCTCTCAGAATATGCAAAGAATAGATACA
CTTATGGAGCACTTCTGAATTGCTATTGCAAGGAACTTATGACGGAAAGG
GCATTGGCTCTGTTTGAGAAGATGGATGAACTGAAGTTTCTGGGAAATAC
TGTAGCTTTTAATAATCTCAGCACTATGTATTTGAGATTGGGCCAGCCAG
AGAAGGTGCGTCCTCTGGTGAACCAAATGAAGCAAAGGAACATTTCTCTA
GACAACCTTACTTATATTGTCTGGATGCAGAGCTACTCTCATTTAAATGA
CATTGATGGGGTAGAGAGAGTTTCTTATGAAATGTGC
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