CB293960
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CB293960 vs. ExPASy Swiss-Prot
Match: PPR4_ARATH (Pentatricopeptide repeat-containing protein At1g02370, mitochondrial OS=Arabidopsis thaliana GN=At1g02370 PE=2 SV=1) HSP 1 Score: 228.024 bits (580), Expect = 4.065e-59 Identity = 118/226 (52.21%), Postives = 151/226 (66.81%), Query Frame = 3 Query: 60 LVRQLCSTPTETVSQRIAAPTPFPTGNEDKLYKRLSALGATGGSVTGALNAYIMEGKTVRKDMLEYCVRSLRKFGRYRHALEVIEWMESRKIHFSYTDFAVYLDLTAKTKGIAAAEEYFNGLSEYAKN-RYTYGALLNCYCKELMTERALALFEKMDELKFLGNTVAFNNLSTMYLRLGQPEKVRPLVNQMKQRNISLDNLTYIVWMQSYSHLNDIDGVERVSYEM 734 +V S+P R + P + +LYK+LS L TGG+V LN +IMEG TVRKD L C ++LRKF R +HA E+ +WME RK+ FS +D A+ LDL KTKG+ AAE YFN L AKN + TYGAL+NCYC EL E+A A FE MDEL F+ N++ FNN+ +MY+RL QPEKV LV+ MKQR IS +TY +WMQS LND+DG+E++ EM Sbjct: 43 VVEASVSSPAAENGVRTSVAAPTVASRQRELYKKLSMLSVTGGTVAETLNQFIMEGITVRKDDLFRCAKTLRKFRRPQHAFEIFDWMEKRKMTFSVSDHAICLDLIGKTKGLEAAENYFNNLDPSAKNHQSTYGALMNCYCVELEEEKAKAHFEIMDELNFVNNSLPFNNMMSMYMRLSQPEKVPVLVDAMKQRGISPCGVTYSIWMQSCGSLNDLDGLEKIIDEM 268
BLAST of CB293960 vs. ExPASy Swiss-Prot
Match: PP300_ARATH (Pentatricopeptide repeat-containing protein At4g01990, mitochondrial OS=Arabidopsis thaliana GN=At4g01990 PE=2 SV=1) HSP 1 Score: 193.356 bits (490), Expect = 1.109e-48 Identity = 105/236 (44.49%), Postives = 149/236 (63.14%), Query Frame = 3 Query: 39 LLSTGSYLVRQLCST---PTETVSQRIAAPTPFPTGNEDKLYKRLSALGATGGS-VTGALNAYIMEGKTVRKDMLEYCVRSLRKFGRYRHALEVIEWMESRKIHFSYTDFAVYLDLTAKTKGIAAAEEYFNGLSEYAKNRYTYGALLNCYCKELMTERALALFEKMDELKFLGNTVAFNNLSTMYLRLGQPEKVRPLVNQMKQRNISLDNLTYIVWMQSYSHLNDIDGVERVSYEM 734 ++ + S L R+ C+T T +S AA P +YK+LS+LG GG + LN ++MEG V+K L + LRKF + + ALE+ EWME ++I F+ +D A+ L+L AK+KG+ AAE YFN L + KN+ TYG+LLNCYC E +A A FE M +L + N++ FNNL MY+ LGQPEKV LV MK+++I+ ++TY +W+QS L D+DGVE+V EM Sbjct: 1 MMHSVSRLARRFCATLATATAEISGEAAASVPTKAKKHRSIYKKLSSLGTRGGGKMEETLNQFVMEGVPVKKHDLIRYAKDLRKFRQPQRALEIFEWMERKEIAFTGSDHAIRLNLIAKSKGLEAAETYFNSLDDSIKNQSTYGSLLNCYCVEKEEVKAKAHFENMVDLNHVSNSLPFNNLMAMYMGLGQPEKVPALVVAMKEKSITPCDITYSMWIQSCGSLKDLDGVEKVLDEM 236
BLAST of CB293960 vs. ExPASy Swiss-Prot
Match: PPR86_ARATH (Pentatricopeptide repeat-containing protein At1g60770 OS=Arabidopsis thaliana GN=At1g60770 PE=2 SV=1) HSP 1 Score: 156.377 bits (394), Expect = 1.503e-37 Identity = 84/198 (42.42%), Postives = 121/198 (61.11%), Query Frame = 3 Query: 141 EDKLYKRLSALGATGGSVTGALNAYIMEGKTVRKDMLEYCVRSLRKFGRYRHALEVIEWMESRKIHFSYTDFAVYLDLTAKTKGIAAAEEYFNGLSEYAKNRYTYGALLNCYCKELMTERALALFEKMDELKFLGNTVAFNNLSTMYLRLGQPEKVRPLVNQMKQRNISLDNLTYIVWMQSYSHLNDIDGVERVSYEM 734 E+ LY RL G T V LN ++ K V K + ++ LR G Y AL++ E ME R ++ + +D A++LDL AK + I A E YF L E +K TYG+LLNCYCKEL+TE+A L KM EL +++++N+L T+Y + G+ EKV ++ ++K N+ D+ TY VWM++ + NDI GVERV EM Sbjct: 22 EEPLYNRLFKDGGTEVKVRQQLNQFLKGTKHVFKWEVGDTIKKLRNRGLYYPALKLSEVMEERGMNKTVSDQAIHLDLVAKAREITAGENYFVDLPETSKTELTYGSLLNCYCKELLTEKAEGLLNKMKELNITPSSMSYNSLMTLYTKTGETEKVPAMIQELKAENVMPDSYTYNVWMRALAATNDISGVERVIEEM 219
BLAST of CB293960 vs. ExPASy Swiss-Prot
Match: PP334_ARATH (Pentatricopeptide repeat-containing protein At4g21705, mitochondrial OS=Arabidopsis thaliana GN=At4g21705 PE=2 SV=1) HSP 1 Score: 139.043 bits (349), Expect = 2.483e-32 Identity = 74/189 (39.15%), Postives = 113/189 (59.79%), Query Frame = 3 Query: 150 LYKRLSALGATGGSVTGALNAYIMEGKTVRKDMLEYCVRSLRKFGRYRHALEVIEWM-ESRKIHFSYTDFAVYLDLTAKTKGIAAAEEYFNGLSEYAKNRYTYGALLNCYCKELMTERALALFEKMDELKFLGNTVAFNNLSTMYLRLGQPEKVRPLVNQMKQRNISLDNLTYIVWMQSYSHLNDIDGV 713 LY ++S LG SV L ++ GK V L V LR+ R+ HALEV +WM E+ FS T+ AV+LDL + G AEEYF L E KN TYGALLNCY ++ E++L FEKM E+ F+ +++ +NN+ +Y +GQ EKV ++ +MK+ N++ DN +Y + + ++ + D++ + Sbjct: 27 LYSKISPLGDPKSSVYPELQNWVQCGKKVSVAELIRIVHDLRRRKRFLHALEVSKWMNETGVCVFSPTEHAVHLDLIGRVYGFVTAEEYFENLKEQYKNDKTYGALLNCYVRQQNVEKSLLHFEKMKEMGFVTSSLTYNNIMCLYTNIGQHEKVPKVLEEMKEENVAPDNYSYRICINAFGAMYDLERI 215
BLAST of CB293960 vs. ExPASy Swiss-Prot
Match: PP302_ARATH (Pentatricopeptide repeat-containing protein At4g02820, mitochondrial OS=Arabidopsis thaliana GN=At4g02820 PE=2 SV=1) HSP 1 Score: 131.339 bits (329), Expect = 5.178e-30 Identity = 74/197 (37.56%), Postives = 119/197 (60.41%), Query Frame = 3 Query: 135 GNEDKLYKRLSALGATGGSVTGALNAYIMEGKTVRKDMLEYCVRSLRKFGRYRHALEVIEWMESRK-IHFSYTDFAVYLDLTAKTKGIAAAEEYFNGLSEYAKNRYTYGALLNCYCKELMTERALALFEKMDELKFLGNTVAFNNLSTMYLRLGQPEKVRPLVNQMKQRNISLDNLTYIVWMQSYSHLNDIDGVERV 722 G D L RL +L T S + + EG +VRK L VR LRK RY+HALE+ EWM ++ I D+AV+LDL +K +G+ +AE++F + + + +LL+ Y + ++++A ALFEKM E FL + + +N++ +MY+ GQ EKV L+ ++K R S D +TY +W+ +++ ND++G E+V Sbjct: 58 GGRDTLGGRLLSLVYTKRSAVVTIRKWKEEGHSVRKYELNRIVRELRKIKRYKHALEICEWMVVQEDIKLQAGDYAVHLDLISKIRGLNSAEKFFEDMPDQMRGHAACTSLLHSYVQNKLSDKAEALFEKMGECGFLKSCLPYNHMLSMYISRGQFEKVPVLIKELKIRT-SPDIVTYNLWLTAFASGNDVEGAEKV 253
BLAST of CB293960 vs. ExPASy Swiss-Prot
Match: PP166_ARATH (Pentatricopeptide repeat-containing protein At2g20710, mitochondrial OS=Arabidopsis thaliana GN=At2g20710 PE=2 SV=1) HSP 1 Score: 130.954 bits (328), Expect = 6.762e-30 Identity = 65/201 (32.34%), Postives = 113/201 (56.22%), Query Frame = 3 Query: 120 TPFPTGNEDKLYKRLSALGATGGSVTGALNAYIMEGKTVRKDMLEYCVRSLRKFGRYRHALEVIEWMESRKIH-FSYTDFAVYLDLTAKTKGIAAAEEYFNGLSEYAKNRYTYGALLNCYCKELMTERALALFEKMDELKFLGNTVAFNNLSTMYLRLGQPEKVRPLVNQMKQRNISLDNLTYIVWMQSYSHLNDIDGVER 719 TP P D L +R++ G S+ L+ ++ +G V+ L ++ LRKF R+ HAL++ +WM ++H S D A+ LDL AK G+ AE++F + +N + YGALLNCY + + +A +F++M EL FL + +N + +Y+R G+ V L+ +M+ + D T + +YS ++D++G+E+ Sbjct: 30 TPSPLDPYDTLQRRVARSGDPSASIIKVLDGWLDQGNLVKTSELHSIIKMLRKFSRFSHALQISDWMSEHRVHEISEGDVAIRLDLIAKVGGLGEAEKFFETIPMERRNYHLYGALLNCYASKKVLHKAEQVFQEMKELGFLKGCLPYNVMLNLYVRTGKYTMVEKLLREMEDETVKPDIFTVNTRLHAYSVVSDVEGMEK 230
BLAST of CB293960 vs. ExPASy Swiss-Prot
Match: PP372_ARATH (Pentatricopeptide repeat-containing protein At5g09450, mitochondrial OS=Arabidopsis thaliana GN=At5g09450 PE=2 SV=1) HSP 1 Score: 122.094 bits (305), Expect = 3.141e-27 Identity = 74/202 (36.63%), Postives = 111/202 (54.95%), Query Frame = 3 Query: 141 EDKLYKRLSALGATGGSVTGALNAYIMEGKTVRKDMLEYCVRSLRKFGRYRHALEVIEWM-ESRKIHFSYTDFAVYLDLTAKTKGIAAAEEYFNGLSEYAKNRYTYGALLNCYCKELMTERALALFEKM---DELKFLGNTVAFNNLSTMYLRLGQPEKVRPLVNQMKQRNISLDNLTYIVWMQSYSHLNDIDGVERVSYEM 734 +D L R+ L S T L +I EG + + L + LR+ RY+HALEV EWM + + S D+A +DL +K GI AAE YF GL +K TY +LL+ Y TERA ALF+++ D L F + +N + T+Y+ +GQ EKV ++ +KQ+ +S D TY +W+ S + +ID + ++ EM Sbjct: 54 KDDLKSRIFRLRLPKRSATTVLEKWIGEGNQMTINELREISKELRRTRRYKHALEVTEWMVQHEESKISDADYASRIDLISKVFGIDAAERYFEGLDIDSKTAETYTSLLHAYAASKQTERAEALFKRIIESDSLTF--GAITYNEMMTLYMSVGQVEKVPEVIEVLKQKKVSPDIFTYNLWLSSCAATFNIDELRKILEEM 253
BLAST of CB293960 vs. ExPASy Swiss-Prot
Match: PPR3_ARATH (Pentatricopeptide repeat-containing protein At1g02150 OS=Arabidopsis thaliana GN=At1g02150 PE=2 SV=2) HSP 1 Score: 119.783 bits (299), Expect = 1.559e-26 Identity = 69/197 (35.03%), Postives = 109/197 (55.33%), Query Frame = 3 Query: 150 LYKRLSALGATGGSVTGALNAYIMEGKTVRKDMLEYCVRSLRKFGRYRHALEVIEWMESR--KIHFSYTDFAVYLDLTAKTKGIAAAEEYFNGLSEYAKNRYTYGALLNCYCKELMTERALALFEKMDELKFLGNTVAFNNLSTMYLRLGQPEKVRPLVNQMKQRNISLDNLTYIVWMQSYSHLNDIDGVERVSYEM 734 +YK++S + LN + G+ + K L V+ LRK+ R ALEV +WM +R + S +D A+ LDL K +GI AEE+F L E K+R YG+LLN Y + E+A AL M + + + + FN + T+Y+ L + +KV +V +MKQ++I LD +Y +W+ S L ++ +E V +M Sbjct: 69 IYKKISLMEKPELGAASVLNQWEKAGRKLTKWELCRVVKELRKYKRANQALEVYDWMNNRGERFRLSASDAAIQLDLIGKVRGIPDAEEFFLQLPENFKDRRVYGSLLNAYVRAKSREKAEALLNTMRDKGYALHPLPFNVMMTLYMNLREYDKVDAMVFEMKQKDIRLDIYSYNIWLSSCGSLGSVEKMELVYQQM 265
BLAST of CB293960 vs. ExPASy Swiss-Prot
Match: PP400_ARATH (Pentatricopeptide repeat-containing protein At5g27460 OS=Arabidopsis thaliana GN=At5g27460 PE=2 SV=1) HSP 1 Score: 101.293 bits (251), Expect = 5.738e-21 Identity = 69/187 (36.90%), Postives = 95/187 (50.80%), Query Frame = 3 Query: 189 SVTGALNAYIMEGKTVRKDMLEYCVRSLRKFGRYRHALEVIEWMESRK-IHFSYTDFAVYLDLTAKTKGIAAAEEYFNGLSEYAKN----RYTYGALLNCYCKELMTERALALFEKMDELKFLGNTVAFNNLSTMYLRLGQPEKVRPLVNQMKQRNISLDNLTYIVWMQSYSHLNDIDGVERVSYEM 734 SVT L I G V L + L + RY AL+++EWME++K I FS D A+ LDL KT G+ EEYF L + + + Y LL Y K M + A AL EK++ L FL FN + +Y GQ EKV +V+ MK I + L+Y +WM + ++ + VE V EM Sbjct: 53 SVTSLLQERIDSGHAVSLSELRLISKRLIRSNRYDLALQMMEWMENQKDIEFSVYDIALRLDLIIKTHGLKQGEEYFEKLLHSSVSMRVAKSAYLPLLRAYVKNKMVKEAEALMEKLNGLGFLVTPHPFNEMMKLYEASGQYEKVVMVVSMMKGNKIPRNVLSYNLWMNACCEVSGVAAVETVYKEM 239
BLAST of CB293960 vs. ExPASy Swiss-Prot
Match: PPR61_ARATH (Putative pentatricopeptide repeat-containing protein At1g28020 OS=Arabidopsis thaliana GN=At1g28020 PE=3 SV=2) HSP 1 Score: 82.0333 bits (201), Expect = 3.602e-15 Identity = 53/174 (30.46%), Postives = 87/174 (50.00%), Query Frame = 3 Query: 204 LNAYIMEGKTVRKDMLEYCVRSLRKFGRYRHALEVIEWMESRKI-HFSYTDFAVYLDLTAKTKGIAAAEEYFNGLSEYAKNRYTYGALLNCYCKELMTE-RALALFEKMDELKFLGNTVAFNNLSTMYLRLGQPEKVRPLVNQMKQRNISLDNLTYIVWMQSYSHLNDIDGVER 719 L + +G V + ++ LR + AL+V EWM KI + DFA L L G+ AE++F + + A+ Y +LLN Y + T +A A F+KM +L L V +N + ++Y L EKV L+ +MK ++ DN+T ++ YS + D+ +E+ Sbjct: 56 LEQWRQQGNQVNPSHVRVIIKKLRDSDQSLQALQVSEWMSKEKICNLIPEDFAARLHLIENVVGLEEAEKFFESIPKNARGDSVYTSLLNSYARSDKTLCKAEATFQKMRDLGLLLRPVPYNAMMSLYSALKNREKVEELLLEMKDNDVEADNVTVNNVLKLYSAVCDVTEMEK 229 The following BLAST results are available for this feature:
BLAST of CB293960 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 13
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Sequences
The
following sequences are available for this feature:
EST sequence >CB293960 ID=CB293960; Name=CB293960; organism=Citrus sinensis; type=EST; length=737bpback to top |