CB293968

Overview
NameCB293968
Unique NameCB293968
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length637
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CB293968_ssr10 microsatellite CB293968_ssr10:10..39. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig7001 contig Csv1_Contig7001:235..871. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CB293968 vs. ExPASy Swiss-Prot
Match: 21KD_DAUCA (21 kDa protein OS=Daucus carota PE=2 SV=1)

HSP 1 Score: 153.68 bits (387), Expect = 7.424e-37
Identity = 78/160 (48.75%), Postives = 108/160 (67.50%), Query Frame = 3 
Query:  162 STPAN-FITNSCRATRYPALCVQCLSGYGHAIRNEHQ-LAVTALSVSLSRARPAAAFVGKLTKVRGIRKREFLTVKDCIENVGDGVHRLTQSVRELGHVGRAVGQDFTWHMRNVQTWVSAALTDENTCLNGFDGLFMDGNVKAAIRRRVTNVAQVTRNAL 635
            + PAN FI  SC  T YPA+C Q LS Y   I+N  Q LA TAL VSL+R + A  F+ +L K +G++ R++  + DC+E V D + R+++S  E+ ++  A G DFT+ M NV+TWVSAALTDE TC++GF G  MDG +K ++R +V  VA+VT NAL
Sbjct:   22 AAPANQFIKTSCTLTTYPAVCEQSLSAYAKTIQNNPQELASTALQVSLTRTQQAQTFMKRLNKFKGLKARQYAAIHDCLEEVEDSLDRVSRSCDEMKNLSHAKGNDFTFRMSNVETWVSAALTDETTCMDGFAGKGMDGKIKESVRAQVVAVARVTSNAL 181
The following BLAST results are available for this feature:
BLAST of CB293968 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
21KD_DAUCA7.424e-3748.7521 kDa protein OS=Daucus carota PE=2 SV=1[more]
back to top
Properties
Property NameValue
Genbank descriptionUCRCS01_01ca10_g1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_01ca10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB293968 ID=CB293968; Name=CB293968; organism=Citrus sinensis; type=EST; length=637bp
GCCCTTAGGCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCCCCCTCTCGG
GCCGAATTCGGGACGAGGTAAATATATATGGCTAAGCTTTCCCTTTTCTC
ACTAGCTCTCTTCTTCCACCTTTACTTGGCTGGAATGGCAGAATCTGCCG
TTCCCGGGCATTCCACTCCCGCAAACTTTATCACAAATTCATGCAGAGCC
ACTCGATATCCAGCGTTATGCGTTCAGTGCCTCTCAGGTTATGGTCATGC
CATCCGAAATGAGCATCAGCTTGCTGTAACTGCCTTGTCAGTGAGCTTAA
GCAGGGCACGGCCAGCTGCTGCTTTTGTGGGCAAGCTGACTAAAGTTAGG
GGAATCAGGAAGAGAGAGTTCCTAACTGTGAAAGACTGCATAGAGAACGT
GGGTGACGGCGTACACCGACTTACTCAATCCGTCAGGGAGCTTGGCCATG
TGGGACGAGCTGTCGGCCAGGACTTTACGTGGCACATGAGAAATGTGCAG
ACTTGGGTTAGTGCCGCACTAACTGATGAGAACACTTGCTTAAATGGTTT
TGATGGTCTGTTCATGGATGGAAATGTAAAGGCTGCGATCAGGAGAAGGG
TCACAAATGTAGCCCAAGTCACTAGGAACGCTCTTGC
back to top