CB293969

Overview
NameCB293969
Unique NameCB293969
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length606
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CB293969_ssr24 microsatellite CB293969_ssr24:24..33. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig6271 contig Csv1_Contig6271:126..730. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB293969 vs. ExPASy Swiss-Prot
Match: TXN4A_MOUSE (Thioredoxin-like protein 4A OS=Mus musculus GN=Txnl4a PE=2 SV=1)

HSP 1 Score: 265.003 bits (676), Expect = 2.111e-70
Identity = 120/142 (84.51%), Postives = 135/142 (95.07%), Query Frame = 1
Query:   34 MSYLLPHLHSGWAVDQAILAEEERLVVIRFGHDWDETCMQMDEVLSSVAETIKNFAVIYLVDISEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNNKINWALKDKQEFIDIVETVYRGARKGRGLVIAPKDYSTKYRY 459
            MSY+LPHLH+GW VDQAIL+EE+R+VVIRFGHDWD TCM+MDEVL S+AE +KNFAVIYLVDI+EVPDFN MYELYDP TVMFFFRNKHIMIDLGTGNNNKINWA++DKQE +DI+ETVYRGARKGRGLV++PKDYSTKYRY
Sbjct:    1 MSYMLPHLHNGWQVDQAILSEEDRVVVIRFGHDWDPTCMKMDEVLYSIAEKVKNFAVIYLVDITEVPDFNKMYELYDPCTVMFFFRNKHIMIDLGTGNNNKINWAMEDKQEMVDIIETVYRGARKGRGLVVSPKDYSTKYRY 142          
BLAST of CB293969 vs. ExPASy Swiss-Prot
Match: TXN4A_HUMAN (Thioredoxin-like protein 4A OS=Homo sapiens GN=TXNL4A PE=1 SV=1)

HSP 1 Score: 265.003 bits (676), Expect = 2.111e-70
Identity = 120/142 (84.51%), Postives = 135/142 (95.07%), Query Frame = 1
Query:   34 MSYLLPHLHSGWAVDQAILAEEERLVVIRFGHDWDETCMQMDEVLSSVAETIKNFAVIYLVDISEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNNKINWALKDKQEFIDIVETVYRGARKGRGLVIAPKDYSTKYRY 459
            MSY+LPHLH+GW VDQAIL+EE+R+VVIRFGHDWD TCM+MDEVL S+AE +KNFAVIYLVDI+EVPDFN MYELYDP TVMFFFRNKHIMIDLGTGNNNKINWA++DKQE +DI+ETVYRGARKGRGLV++PKDYSTKYRY
Sbjct:    1 MSYMLPHLHNGWQVDQAILSEEDRVVVIRFGHDWDPTCMKMDEVLYSIAEKVKNFAVIYLVDITEVPDFNKMYELYDPCTVMFFFRNKHIMIDLGTGNNNKINWAMEDKQEMVDIIETVYRGARKGRGLVVSPKDYSTKYRY 142          
BLAST of CB293969 vs. ExPASy Swiss-Prot
Match: DIMI_SCHPO (Mitosis protein dim1 OS=Schizosaccharomyces pombe GN=dim1 PE=1 SV=1)

HSP 1 Score: 235.343 bits (599), Expect = 1.791e-61
Identity = 108/142 (76.06%), Postives = 126/142 (88.73%), Query Frame = 1
Query:   34 MSYLLPHLHSGWAVDQAILAEEERLVVIRFGHDWDETCMQMDEVLSSVAETIKNFAVIYLVDISEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNNKINWALKDKQEFIDIVETVYRGARKGRGLVIAPKDYSTKYRY 459
            MSY LPHLHSGW VDQAIL+E+ERLVVIRFG D DE C++ DEVL  +AE + N AVIYLVDI EVPDFN MYELYD +T+MFF+RNKH+MIDLGTGNNNKINW L+DKQE IDI+ET++RGARKG+GLVI+PKDYST++RY
Sbjct:    1 MSYFLPHLHSGWHVDQAILSEQERLVVIRFGRDHDEECIKQDEVLYRIAEKVVNMAVIYLVDIDEVPDFNKMYELYDRTTIMFFYRNKHMMIDLGTGNNNKINWPLEDKQEMIDIIETIFRGARKGKGLVISPKDYSTRHRY 142          
BLAST of CB293969 vs. ExPASy Swiss-Prot
Match: DIB1_ASHGO (Spliceosomal protein DIB1 OS=Ashbya gossypii GN=DIB1 PE=3 SV=1)

HSP 1 Score: 198.364 bits (503), Expect = 2.426e-50
Identity = 91/138 (65.94%), Postives = 112/138 (81.16%), Query Frame = 1
Query:   37 SYLLPHLHSGWAVDQAILAEEERLVVIRFGHDWDETCMQMDEVLSSVAETIKNFAVIYLVDISEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNNKINWALKDKQEFIDIVETVYRGARKGRGLVIAPKDYSTK 450
            S  LPHLHSGW VDQAI+ EEERLVVIRFG D D +CM MDE+L S+AE + NFA IY+ D +EVPDFN MYEL DP TVMFF++NKH+  D GTGNNNK+N+ + +KQE IDI+ETV+RGAR+ +GLV++P DY+ K
Sbjct:    3 SVFLPHLHSGWHVDQAIVTEEERLVVIRFGSDSDRSCMLMDEILYSIAEKVVNFAAIYVCDTTEVPDFNEMYELQDPMTVMFFYKNKHMRCDFGTGNNNKMNFVVDNKQEMIDIIETVFRGARRNKGLVVSPYDYNYK 140          
BLAST of CB293969 vs. ExPASy Swiss-Prot
Match: DIB1_YEAST (Spliceosomal protein DIB1 OS=Saccharomyces cerevisiae GN=DIB1 PE=1 SV=1)

HSP 1 Score: 190.274 bits (482), Expect = 6.607e-48
Identity = 90/138 (65.22%), Postives = 110/138 (79.71%), Query Frame = 1
Query:   37 SYLLPHLHSGWAVDQAILAEEERLVVIRFGHDWDETCMQMDEVLSSVAETIKNFAVIYLVDISEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNNKINWALKDKQEFIDIVETVYRGARKGRGLVIAPKDYSTK 450
            S LLP L +GW VDQAI+ E +RLVVIRFG   D  CM MDE+LSS+AE ++NFAVIYL DI EV DF+ MYEL DP TVMFF+ NKH+M D GTGNNNK+N+ + DKQE IDI+ET++RGARK +GLV++P DY+ K
Sbjct:    3 SVLLPQLRTGWHVDQAIVTETKRLVVIRFGRKNDRQCMIMDELLSSIAERVRNFAVIYLCDIDEVSDFDEMYELTDPMTVMFFYHNKHMMCDFGTGNNNKLNFIVDDKQEMIDILETIFRGARKNKGLVVSPYDYNHK 140          
BLAST of CB293969 vs. ExPASy Swiss-Prot
Match: TXN4A_DICDI (Thioredoxin-like protein 4A homolog OS=Dictyostelium discoideum GN=txnl4a PE=3 SV=4)

HSP 1 Score: 189.119 bits (479), Expect = 1.472e-47
Identity = 83/132 (62.88%), Postives = 112/132 (84.85%), Query Frame = 1
Query:   64 GWAVDQAILAEEERLVVIRFGHDWDETCMQMDEVLSSVAETIKNFAVIYLVDISEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNNKINWALKDKQEFIDIVETVYRGARKGRGLVIAPKDYSTKYRY 459
            G  + + +  EE+R+VVIRFGHD++  CM+ D++L+S+AE +KN AVIY+VDI+EVPD N+MYELYD    MFF+RNKHIM+DLGTGNNNKINWAL +KQ+ IDI+ETVY+GARKG+GLV +P+D+S +Y++
Sbjct:    2 GGLLIKQLSTEEDRVVVIRFGHDYNPECMKQDDILASIAEKVKNMAVIYVVDITEVPDLNSMYELYDDCPTMFFYRNKHIMVDLGTGNNNKINWALTNKQDMIDIIETVYKGARKGKGLVNSPRDFSPQYKF 133          
BLAST of CB293969 vs. ExPASy Swiss-Prot
Match: DIB1_CANGA (Spliceosomal protein DIB1 OS=Candida glabrata GN=DIB1 PE=3 SV=1)

HSP 1 Score: 184.882 bits (468), Expect = 2.776e-46
Identity = 86/135 (63.70%), Postives = 107/135 (79.26%), Query Frame = 1
Query:   46 LPHLHSGWAVDQAILAEEERLVVIRFGHDWDETCMQMDEVLSSVAETIKNFAVIYLVDISEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNNKINWALKDKQEFIDIVETVYRGARKGRGLVIAPKDYSTK 450
            L +LHSGW VDQAI+ EEERLVV+RFG   D  CM MDE+L+SVAE ++NF  IYL DI EVPDFN MYEL D   +MFF++NKH+M D GTGNNNK+N+   DKQE IDI+ET++RGARK +G+V++P DY+ K
Sbjct:    4 LYNLHSGWHVDQAIVTEEERLVVVRFGRTADRECMLMDEMLASVAEKVRNFVAIYLCDIDEVPDFNDMYELNDNMCLMFFYKNKHMMCDFGTGNNNKMNFLPDDKQELIDIMETIFRGARKNKGIVVSPYDYNHK 138          
BLAST of CB293969 vs. ExPASy Swiss-Prot
Match: TXN4B_HUMAN (Thioredoxin-like protein 4B OS=Homo sapiens GN=TXNL4B PE=1 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 1.432e-26
Identity = 60/149 (40.27%), Postives = 96/149 (64.43%), Query Frame = 1
Query:   34 MSYLLPHLHSGWAVDQAILAEEERLVVIRFGHDWDETCMQMDEVLSSVAETIKNFAVIYLVDISEVPDFNTMYEL-YDPSTVMFFFRNKHIMIDLGTGNNNKINWALKDKQEFIDIVETVYRGARKGRGLVIAPKDYSTKYRY*VLVQN 477
            MS+LLP L S   VDQAI +  E+++V+RFG D D  C+Q+D++LS  +  +   A IYLVD+ +   +   +++ Y PSTV FFF  +H+ +D G+ ++ K   + K KQ+FID++E +YRGA +G+ +V +P D     +Y +L Q+
Sbjct:    1 MSFLLPKLTSKKEVDQAIKSTAEKVLVLRFGRDEDPVCLQLDDILSKTSSDLSKMAAIYLVDVDQTAVYTQYFDISYIPSTV-FFFNGQHMKVDYGSPDHTKFVGSFKTKQDFIDLIEVIYRGAMRGKLIVQSPIDPKNIPKYDLLYQD 148          
BLAST of CB293969 vs. ExPASy Swiss-Prot
Match: TXN4B_MOUSE (Thioredoxin-like protein 4B OS=Mus musculus GN=Txnl4b PE=2 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 4.607e-25
Identity = 60/149 (40.27%), Postives = 93/149 (62.42%), Query Frame = 1
Query:   34 MSYLLPHLHSGWAVDQAILAEEERLVVIRFGHDWDETCMQMDEVLSSVAETIKNFAVIYLVDISEVPDFNTMYEL-YDPSTVMFFFRNKHIMIDLGTGNNNKINWALKDKQEFIDIVETVYRGARKGRGLVIAPKDYSTKYRY*VLVQN 477
            MS+LLP L S   VDQAI +  E+ +V+RFG D D  C+Q+D++LS  +  +   A IYL D+   P +   +++ Y PSTV FFF  +H+  D G+ ++ K   + K KQ+FID++E +YRGA +G+ +V +P D     +Y +L Q+
Sbjct:    1 MSFLLPKLTSKKEVDQAIKSTAEKGLVLRFGRDEDPVCLQLDDILSKTSADLSKMAAIYLGDVDHTPVYTQYFDISYIPSTV-FFFNGQHMKGDYGSPDHTKFVGSFKTKQDFIDLIEVIYRGAMRGKLIVQSPIDPKNVPKYDLLYQD 148          
The following BLAST results are available for this feature:
BLAST of CB293969 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 9
Match NameE-valueIdentityDescription
TXN4A_MOUSE2.111e-7084.51Thioredoxin-like protein 4A OS=Mus musculus GN=Txn... [more]
TXN4A_HUMAN2.111e-7084.51Thioredoxin-like protein 4A OS=Homo sapiens GN=TXN... [more]
DIMI_SCHPO1.791e-6176.06Mitosis protein dim1 OS=Schizosaccharomyces pombe ... [more]
DIB1_ASHGO2.426e-5065.94Spliceosomal protein DIB1 OS=Ashbya gossypii GN=DI... [more]
DIB1_YEAST6.607e-4865.22Spliceosomal protein DIB1 OS=Saccharomyces cerevis... [more]
TXN4A_DICDI1.472e-4762.88Thioredoxin-like protein 4A homolog OS=Dictyosteli... [more]
DIB1_CANGA2.776e-4663.70Spliceosomal protein DIB1 OS=Candida glabrata GN=D... [more]
TXN4B_HUMAN1.432e-2640.27Thioredoxin-like protein 4B OS=Homo sapiens GN=TXN... [more]
TXN4B_MOUSE4.607e-2540.27Thioredoxin-like protein 4B OS=Mus musculus GN=Txn... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS01_01cd12_g1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_01cd12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB293969 ID=CB293969; Name=CB293969; organism=Citrus sinensis; type=EST; length=606bp
GCACGTGGGAGAGGGAGAGAGAAAGAGAGAGAGATGTCGTACTTGCTACC
GCACTTGCACTCAGGATGGGCAGTAGATCAGGCCATCCTGGCTGAGGAAG
AGCGTCTCGTGGTCATCCGTTTCGGCCACGACTGGGACGAAACCTGTATG
CAGATGGATGAAGTGCTGTCATCAGTTGCCGAGACAATTAAGAATTTTGC
TGTCATCTACCTCGTGGACATTTCAGAGGTGCCTGATTTTAACACAATGT
ATGAGCTTTACGATCCCTCAACCGTCATGTTCTTCTTCAGAAACAAGCAC
ATTATGATTGATCTTGGAACTGGAAATAACAACAAGATCAACTGGGCTCT
TAAGGACAAGCAGGAGTTCATAGACATTGTTGAGACTGTCTACCGAGGGG
CAAGGAAGGGCCGCGGTCTAGTAATTGCACCTAAGGATTATTCCACCAAG
TACCGCTACTGAGTACTTGTGCAAAATTGTAATTCATTTGTAAGATTATC
ATTTGAAACCTATTGTGTGAAAGTTGTCTTCAAAAGTCAATGGAGTGAGA
ACGCATTGATCTATCAATGAACAGAGAACACCCCCTTTAATGAAAAAAAA
AAAAAA
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