CB293970

Overview
NameCB293970
Unique NameCB293970
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length760
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CB293970_ssr14 microsatellite CB293970_ssr14:14..33. BLAST: Citrus ESTs to Prunus persica proteins V1
CB293970_ssr70 microsatellite CB293970_ssr70:70..81. BLAST: Citrus ESTs to Prunus persica proteins V1
CB293970_ssr128 microsatellite CB293970_ssr128:128..139. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig2239 contig Csv1_Contig2239:20..779. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CB293970 vs. ExPASy Swiss-Prot
Match: H2AV3_ORYSJ (Probable histone H2A variant 3 OS=Oryza sativa subsp. japonica GN=Os03g0743400 PE=2 SV=1)

HSP 1 Score: 178.333 bits (451), Expect = 3.891e-44
Identity = 97/131 (74.05%), Postives = 101/131 (77.10%), Query Frame = 3 
Query:  189 KGLITGKTTIXXXXXXXXXX--PVSRSSRAGLQFPVGRVHRLLKEXXXXXXXXXXXXXXYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGVIPHIHKSLINKSSKE 575
            KGL+  KTT             PVSRSSRAGLQFPVGR+HR LK+              Y+AAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGVIPHIHKSLINKSSKE
Sbjct:    7 KGLLAAKTTAAKSAEKDKGKKAPVSRSSRAGLQFPVGRIHRQLKQRTQANGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGVIPHIHKSLINKSSKE 137
[Close]
BLAST of CB293970 vs. ExPASy Swiss-Prot
Match: H2AV3_ARATH (Probable histone H2A variant 3 OS=Arabidopsis thaliana GN=At1g52740 PE=1 SV=1)

HSP 1 Score: 178.333 bits (451), Expect = 3.891e-44
Identity = 97/130 (74.62%), Postives = 102/130 (78.46%), Query Frame = 3 
Query:  186 AKGLITGKTTIXXXXXXXXXXPVSRSSRAGLQFPVGRVHRLLKEXXXXXXXXXXXXXXYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGVIPHIHKSLINKSSKE 575
            AKGLI GK +           P++RSSRAGLQFPVGRVHRLLK               YTAAILEYLTAEVLELAGNASKDLKVKRI+PRHLQLAIRGDEELDTLIKGTIAGGGVIPHIHKSLINKS+KE
Sbjct:    6 AKGLIMGKPS-GSDKDKDKKKPITRSSRAGLQFPVGRVHRLLKTRSTAHGRVGATAAVYTAAILEYLTAEVLELAGNASKDLKVKRISPRHLQLAIRGDEELDTLIKGTIAGGGVIPHIHKSLINKSAKE 134
[Close]
BLAST of CB293970 vs. ExPASy Swiss-Prot
Match: H2AV1_ORYSJ (Probable histone H2A variant 1 OS=Oryza sativa subsp. japonica GN=Os03g0162200 PE=2 SV=1)

HSP 1 Score: 176.022 bits (445), Expect = 1.931e-43
Identity = 96/132 (72.73%), Postives = 100/132 (75.76%), Query Frame = 3 
Query:  189 KGLITGKTTIXXXXXXXXXX---PVSRSSRAGLQFPVGRVHRLLKEXXXXXXXXXXXXXXYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGVIPHIHKSLINKSSKE 575
            KGL+  KTT              PVSRSSRAGLQFPVGR+HR LK               Y+AAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGVIPHIHKSLINK+SKE
Sbjct:    7 KGLLAAKTTAAKSADKDKDKKKAPVSRSSRAGLQFPVGRIHRQLKSRASAHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGVIPHIHKSLINKTSKE 138
[Close]
BLAST of CB293970 vs. ExPASy Swiss-Prot
Match: H2AV2_ORYSJ (Probable histone H2A variant 2 OS=Oryza sativa subsp. japonica GN=Os10g0418000 PE=2 SV=1)

HSP 1 Score: 174.481 bits (441), Expect = 5.618e-43
Identity = 95/133 (71.43%), Postives = 100/133 (75.19%), Query Frame = 3 
Query:  189 KGLITGKTTIXXXXXXXXXX----PVSRSSRAGLQFPVGRVHRLLKEXXXXXXXXXXXXXXYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGVIPHIHKSLINKSSKE 575
            KGL+  KTT               PVSRSSRAG+QFPVGR+HR LK               YTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGVIPHIHKSLINK++KE
Sbjct:    7 KGLLAAKTTAAKAAADKDKDRKKAPVSRSSRAGIQFPVGRIHRQLKGRVSANGRVGATAAVYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGVIPHIHKSLINKTAKE 139
[Close]
BLAST of CB293970 vs. ExPASy Swiss-Prot
Match: H2AV1_ARATH (Histone H2A variant 1 OS=Arabidopsis thaliana GN=H2AV PE=1 SV=1)

HSP 1 Score: 171.785 bits (434), Expect = 3.642e-42
Identity = 91/130 (70.00%), Postives = 99/130 (76.15%), Query Frame = 3 
Query:  189 KGLITGKT-TIXXXXXXXXXXPVSRSSRAGLQFPVGRVHRLLKEXXXXXXXXXXXXXXYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGVIPHIHKSLINKSSKE 575
            KGL+  KT             P+SRS+RAG+QFPVGR+HR LK               YTA+ILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGVIPHIHKSLINK++KE
Sbjct:    7 KGLVAAKTMAANKDKDKDKKKPISRSARAGIQFPVGRIHRQLKTRVSAHGRVGATAAVYTASILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGVIPHIHKSLINKTTKE 136
[Close]
BLAST of CB293970 vs. ExPASy Swiss-Prot
Match: H2AV2_ARATH (Probable histone H2A variant 2 OS=Arabidopsis thaliana GN=At2g38810 PE=1 SV=1)

HSP 1 Score: 169.859 bits (429), Expect = 1.384e-41
Identity = 90/130 (69.23%), Postives = 99/130 (76.15%), Query Frame = 3 
Query:  189 KGLITGKTTIXXXXXXXXXXP-VSRSSRAGLQFPVGRVHRLLKEXXXXXXXXXXXXXXYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGVIPHIHKSLINKSSKE 575
            KGL+  KTT             +SRSSRAG+QFPVGR+HR LK+              YTA+ILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGVIPHIHKSL+NK +K+
Sbjct:    7 KGLLAAKTTAAAANKDSVKKKSISRSSRAGIQFPVGRIHRQLKQRVSAHGRVGATAAVYTASILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGVIPHIHKSLVNKVTKD 136
[Close]
BLAST of CB293970 vs. ExPASy Swiss-Prot
Match: H2AZL_XENTR (Histone H2A.Z-like OS=Xenopus tropicalis GN=h2a.zl PE=2 SV=3)

HSP 1 Score: 160.229 bits (404), Expect = 1.096e-38
Identity = 82/108 (75.93%), Postives = 88/108 (81.48%), Query Frame = 3 
Query:  252 VSRSSRAGLQFPVGRVHRLLKEXXXXXXXXXXXXXXYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGVIPHIHKSLINKSSKE 575
            ++RSSRAGLQFPVGR+HRLLK               YTAAILEYLTAEVLELAGNASKDLKVKRI+PRHLQLAIRGDEELD LIK TIAGGGVIPHIHKSLI K  ++
Sbjct:   18 ITRSSRAGLQFPVGRIHRLLKNRTTSHGRVGGTAAVYTAAILEYLTAEVLELAGNASKDLKVKRISPRHLQLAIRGDEELDALIKATIAGGGVIPHIHKSLIGKKGQQ 125
[Close]
BLAST of CB293970 vs. ExPASy Swiss-Prot
Match: H2AZL_XENLA (Histone H2A.Z-like OS=Xenopus laevis GN=h2a.zl1 PE=2 SV=3)

HSP 1 Score: 160.229 bits (404), Expect = 1.096e-38
Identity = 82/108 (75.93%), Postives = 88/108 (81.48%), Query Frame = 3 
Query:  252 VSRSSRAGLQFPVGRVHRLLKEXXXXXXXXXXXXXXYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGVIPHIHKSLINKSSKE 575
            ++RSSRAGLQFPVGR+HRLLK               YTAAILEYLTAEVLELAGNASKDLKVKRI+PRHLQLAIRGDEELD LIK TIAGGGVIPHIHKSLI K  ++
Sbjct:   18 ITRSSRAGLQFPVGRIHRLLKNRTTSHGRVGGTAAVYTAAILEYLTAEVLELAGNASKDLKVKRISPRHLQLAIRGDEELDALIKATIAGGGVIPHIHKSLIGKKGQQ 125
[Close]
BLAST of CB293970 vs. ExPASy Swiss-Prot
Match: H2AZ_SHEEP (Histone H2A.Z OS=Ovis aries GN=H2AFZ PE=2 SV=3)

HSP 1 Score: 157.918 bits (398), Expect = 5.442e-38
Identity = 82/108 (75.93%), Postives = 87/108 (80.56%), Query Frame = 3 
Query:  252 VSRSSRAGLQFPVGRVHRLLKEXXXXXXXXXXXXXXYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGVIPHIHKSLINKSSKE 575
            VSRS RAGLQFPVGR+HR LK               Y+AAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELD+LIK TIAGGGVIPHIHKSLI K  ++
Sbjct:   18 VSRSQRAGLQFPVGRIHRHLKSRTTSHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDSLIKATIAGGGVIPHIHKSLIGKKGQQ 125
[Close]
BLAST of CB293970 vs. ExPASy Swiss-Prot
Match: H2AZ_RAT (Histone H2A.Z OS=Rattus norvegicus GN=H2afz PE=1 SV=2)

HSP 1 Score: 157.918 bits (398), Expect = 5.442e-38
Identity = 82/108 (75.93%), Postives = 87/108 (80.56%), Query Frame = 3 
Query:  252 VSRSSRAGLQFPVGRVHRLLKEXXXXXXXXXXXXXXYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGVIPHIHKSLINKSSKE 575
            VSRS RAGLQFPVGR+HR LK               Y+AAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELD+LIK TIAGGGVIPHIHKSLI K  ++
Sbjct:   18 VSRSQRAGLQFPVGRIHRHLKSRTTSHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDSLIKATIAGGGVIPHIHKSLIGKKGQQ 125
The following BLAST results are available for this feature:
BLAST of CB293970 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 241
Match NameE-valueIdentityDescription
H2AV3_ORYSJ3.891e-4474.05Probable histone H2A variant 3 OS=Oryza sativa sub... [more]
H2AV3_ARATH3.891e-4474.62Probable histone H2A variant 3 OS=Arabidopsis thal... [more]
H2AV1_ORYSJ1.931e-4372.73Probable histone H2A variant 1 OS=Oryza sativa sub... [more]
H2AV2_ORYSJ5.618e-4371.43Probable histone H2A variant 2 OS=Oryza sativa sub... [more]
H2AV1_ARATH3.642e-4270.00Histone H2A variant 1 OS=Arabidopsis thaliana GN=H... [more]
H2AV2_ARATH1.384e-4169.23Probable histone H2A variant 2 OS=Arabidopsis thal... [more]
H2AZL_XENTR1.096e-3875.93Histone H2A.Z-like OS=Xenopus tropicalis GN=h2a.zl... [more]
H2AZL_XENLA1.096e-3875.93Histone H2A.Z-like OS=Xenopus laevis GN=h2a.zl1 PE... [more]
H2AZ_SHEEP5.442e-3875.93Histone H2A.Z OS=Ovis aries GN=H2AFZ PE=2 SV=3[more]
H2AZ_RAT5.442e-3875.93Histone H2A.Z OS=Rattus norvegicus GN=H2afz PE=1 S... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS01_01da01_g1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_01da01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB293970 ID=CB293970; Name=CB293970; organism=Citrus sinensis; type=EST; length=760bp
GCACTAGGCTCGTTCTCTCTCTCTCTCTCTCTCACACACAAAAATCTCAA
ACGCTCGCTTTGCTTTATCTCTTTCTTTCTTCTCCGATAATTTTCATCTC
AGAAAAAATTAACCATAATTAAATAAATAATTAATTAATTTAAAAGAAGC
TGTAGCAATTAGGCGGGAAAATGTCGGGCAAAGGAGCCAAAGGACTGATA
ACAGGCAAAACCACCATTAACAACAACAAGGATAAGGACAAGAAGAAACC
CGTCTCCCGTTCTTCTCGTGCTGGTCTTCAGTTCCCAGTGGGAAGGGTCC
ATCGTCTACTAAAGGAAAGGGCTGCTGCTCACGGAAGGGTTGGCGCAACA
GCTGCTGTTTATACAGCAGCCATTTTGGAATATCTAACTGCCGAAGTGTT
GGAGTTGGCAGGGAATGCTAGCAAGGATTTGAAGGTCAAACGTATTACTC
CAAGGCATTTGCAGCTTGCTATCCGAGGAGATGAAGAACTTGACACTCTC
ATTAAAGGAACCATAGCCGGTGGAGGAGTTATTCCTCATATCCACAAGTC
CCTCATCAATAAATCCTCCAAAGAGTAGTTCGTGACACCGTCATCCTCTC
GGCTTTGTTTATGTGTGTACTTTTAGCTGTGCTGAAATATCTAAATGAGA
AATGATGCCAAAGATGTGTTAATGCTAGGAATCTGCATTCTTCAATCCTC
ATTTCATGCAGCGACGAATTATGGTGCTTGTTTTTTCCCATGTTGGTATT
GAACTGTTAC
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