CB293971

Overview
NameCB293971
Unique NameCB293971
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length722
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CB293971_ssr3 microsatellite CB293971_ssr3:3..14. BLAST: Citrus ESTs to Prunus persica proteins V1
CB293971_ssr22 microsatellite CB293971_ssr22:22..33. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig3631 contig Csv1_Contig3631:8..729. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB293971 vs. ExPASy Swiss-Prot
Match: VA725_ARATH (Vesicle-associated membrane protein 725 OS=Arabidopsis thaliana GN=VAMP725 PE=2 SV=2)

HSP 1 Score: 355.14 bits (910), Expect = 2.121e-97
Identity = 170/195 (87.18%), Postives = 185/195 (94.87%), Query Frame = 3
Query:   90 RKMGQQSLIYSFVARGTVILAEYTEFTGNFTGIAAQCLQKLPSSNNKFTYNCDGHTFNYLVDDGFTYCVVAVESVGRQVPIAFLERVKEDFIKRYGGGKAATAVANGLNKEFGPKLKEHMQYCIDHPEEISKLAKVKAQVSEVKGVMMDNIEKVLDRGEKIELLVDRTENLRSQAQDFRQQGTQMRRKMWFQNMK 674
            R MGQQ+LIYSFVARGTVIL EYTEF GNFT +AAQCLQKLPSSNNKFTYNCDGHTFNYLV++GFTYCVVAVESVGRQ+P+AFLERVKEDF KRYGGGKA TA AN LN+EFG KLKEHMQYC+DHP+EISKLAKVKAQV+EVKGVMM+NIEKVLDRGEKIELLVD+TENLRSQAQDFR QGT++RRKMWF+NMK
Sbjct:   64 RTMGQQNLIYSFVARGTVILVEYTEFKGNFTAVAAQCLQKLPSSNNKFTYNCDGHTFNYLVENGFTYCVVAVESVGRQIPMAFLERVKEDFNKRYGGGKATTAQANSLNREFGSKLKEHMQYCVDHPDEISKLAKVKAQVTEVKGVMMENIEKVLDRGEKIELLVDKTENLRSQAQDFRTQGTKIRRKMWFENMK 258          
BLAST of CB293971 vs. ExPASy Swiss-Prot
Match: VA722_ARATH (Vesicle-associated membrane protein 722 OS=Arabidopsis thaliana GN=VAMP722 PE=2 SV=2)

HSP 1 Score: 354.755 bits (909), Expect = 2.769e-97
Identity = 172/193 (89.12%), Postives = 183/193 (94.82%), Query Frame = 3
Query:   96 MGQQSLIYSFVARGTVILAEYTEFTGNFTGIAAQCLQKLPSSNNKFTYNCDGHTFNYLVDDGFTYCVVAVESVGRQVPIAFLERVKEDFIKRYGGGKAATAVANGLNKEFGPKLKEHMQYCIDHPEEISKLAKVKAQVSEVKGVMMDNIEKVLDRGEKIELLVDRTENLRSQAQDFRQQGTQMRRKMWFQNMK 674
            M QQSLIYSFVARGTVIL E+T+F GNFT IAAQCLQKLPSSNNKFTYNCDGHTFNYLV++GFTYCVVAV+S GRQ+P+AFLERVKEDF KRYGGGKAATA AN LNKEFG KLKEHMQYC+DHP+EISKLAKVKAQVSEVKGVMM+NIEKVLDRGEKIELLVD+TENLRSQAQDFR QGTQMRRKMWFQNMK
Sbjct:    1 MAQQSLIYSFVARGTVILVEFTDFKGNFTSIAAQCLQKLPSSNNKFTYNCDGHTFNYLVENGFTYCVVAVDSAGRQIPMAFLERVKEDFNKRYGGGKAATAQANSLNKEFGSKLKEHMQYCMDHPDEISKLAKVKAQVSEVKGVMMENIEKVLDRGEKIELLVDKTENLRSQAQDFRTQGTQMRRKMWFQNMK 193          
BLAST of CB293971 vs. ExPASy Swiss-Prot
Match: VA726_ARATH (Putative vesicle-associated membrane protein 726 OS=Arabidopsis thaliana GN=VAMP726 PE=2 SV=2)

HSP 1 Score: 352.058 bits (902), Expect = 1.795e-96
Identity = 168/193 (87.05%), Postives = 182/193 (94.30%), Query Frame = 3
Query:   96 MGQQSLIYSFVARGTVILAEYTEFTGNFTGIAAQCLQKLPSSNNKFTYNCDGHTFNYLVDDGFTYCVVAVESVGRQVPIAFLERVKEDFIKRYGGGKAATAVANGLNKEFGPKLKEHMQYCIDHPEEISKLAKVKAQVSEVKGVMMDNIEKVLDRGEKIELLVDRTENLRSQAQDFRQQGTQMRRKMWFQNMK 674
            MGQQSLIYSFVARGTVILAEYTEF GNFT +AAQCLQKLPSSNNKFTYNCDGHTFNYL D+GFTYCVV +ES GRQ+P+AFLERVKEDF KRYGGGKA+TA AN LNKEFG KLKEHMQYC DHPEEISKL+KVKAQV+EVKGVMM+NIEKVLDRGEKIELLVD+TENLRSQAQDFR QGT+M+RK+WF+NMK
Sbjct:    1 MGQQSLIYSFVARGTVILAEYTEFKGNFTSVAAQCLQKLPSSNNKFTYNCDGHTFNYLADNGFTYCVVVIESAGRQIPMAFLERVKEDFNKRYGGGKASTAKANSLNKEFGSKLKEHMQYCADHPEEISKLSKVKAQVTEVKGVMMENIEKVLDRGEKIELLVDKTENLRSQAQDFRTQGTKMKRKLWFENMK 193          
BLAST of CB293971 vs. ExPASy Swiss-Prot
Match: VA721_ARATH (Vesicle-associated membrane protein 721 OS=Arabidopsis thaliana GN=VAMP721 PE=2 SV=1)

HSP 1 Score: 350.903 bits (899), Expect = 3.999e-96
Identity = 170/193 (88.08%), Postives = 181/193 (93.78%), Query Frame = 3
Query:   96 MGQQSLIYSFVARGTVILAEYTEFTGNFTGIAAQCLQKLPSSNNKFTYNCDGHTFNYLVDDGFTYCVVAVESVGRQVPIAFLERVKEDFIKRYGGGKAATAVANGLNKEFGPKLKEHMQYCIDHPEEISKLAKVKAQVSEVKGVMMDNIEKVLDRGEKIELLVDRTENLRSQAQDFRQQGTQMRRKMWFQNMK 674
            M QQSLIYSFVARGTVIL E+T+F GNFT IAAQCLQKLPSSNNKFTYNCDGHTFNYLV+DGFTYCVVAV+S GRQ+P++FLERVKEDF KRYGGGKAATA AN LNKEFG KLKEHMQYC+DHP+EISKLAKVKAQVSEVKGVMM+NIEKVLDRGEKIELLVD+TENLRSQAQDFR  GTQMRRKMW QNMK
Sbjct:    1 MAQQSLIYSFVARGTVILVEFTDFKGNFTSIAAQCLQKLPSSNNKFTYNCDGHTFNYLVEDGFTYCVVAVDSAGRQIPMSFLERVKEDFNKRYGGGKAATAQANSLNKEFGSKLKEHMQYCMDHPDEISKLAKVKAQVSEVKGVMMENIEKVLDRGEKIELLVDKTENLRSQAQDFRTTGTQMRRKMWLQNMK 193          
BLAST of CB293971 vs. ExPASy Swiss-Prot
Match: VA724_ARATH (Vesicle-associated membrane protein 724 OS=Arabidopsis thaliana GN=VAMP724 PE=2 SV=2)

HSP 1 Score: 301.212 bits (770), Expect = 3.634e-81
Identity = 141/194 (72.68%), Postives = 170/194 (87.63%), Query Frame = 3
Query:   96 MGQQSLIYSFVARGTVILAEYTEFTGNFTGIAAQCLQKLPSSNN-KFTYNCDGHTFNYLVDDGFTYCVVAVESVGRQVPIAFLERVKEDFIKRYGGGKAATAVANGLNKEFGPKLKEHMQYCIDHPEEISKLAKVKAQVSEVKGVMMDNIEKVLDRGEKIELLVDRTENLRSQAQDFRQQGTQMRRKMWFQNMK 674
            MGQ+S IYSFVARGT+ILAEYTEFTGNF  IAAQCLQKLPSS+N KFTYNCD HTFN+LV+DG+ YCVVA +S+ +Q+ IAFLERVK DF KRYGGGKA+TA+A  LNKEFGP +KEHM Y +DH EEI KL KVKAQVSEVK +M++NI+K +DRGE + +L D+TENLRSQAQ++++QGTQ+RRK+W+QNMK
Sbjct:    1 MGQESFIYSFVARGTMILAEYTEFTGNFPSIAAQCLQKLPSSSNSKFTYNCDHHTFNFLVEDGYAYCVVAKDSLSKQISIAFLERVKADFKKRYGGGKASTAIAKSLNKEFGPVMKEHMNYIVDHAEEIEKLIKVKAQVSEVKSIMLENIDKAIDRGENLTVLTDKTENLRSQAQEYKKQGTQVRRKLWYQNMK 194          
BLAST of CB293971 vs. ExPASy Swiss-Prot
Match: VA723_ARATH (Vesicle-associated membrane protein 723 OS=Arabidopsis thaliana GN=VAMP723 PE=2 SV=1)

HSP 1 Score: 277.33 bits (708), Expect = 5.619e-74
Identity = 138/193 (71.50%), Postives = 157/193 (81.35%), Query Frame = 3
Query:   96 MGQQSLIYSFVARGTVILAEYTEFTGNFTGIAAQCLQKLPSSNNKFTYNCDGHTFNYLVDDGFTYCVVAVESVGRQVPIAFLERVKEDFIKRYGGGKAATAVANGLNKEFGPKLKEHMQYCIDHPEEISKLAKVKAQVSEVKGVMMDNIEKVLDRGEKIELLVDRTENLRSQAQDFRQQGTQMRRKMWFQNMK 674
            M QQSL YSF+ARGTVIL E+T+F GNFT +AAQ L+ LPSSNNKFTYNCDGHTFN LV++GFTYCVVAV+S GR++P+AFLERVKEDF KRYGG KAAT  AN LNKEFG  LKEHMQYC+DHP+EIS LAK KAQVSEVK +MM+NIEKVL RG   E+L     +  SQ Q F  + TQM+RK WFQNMK
Sbjct:    1 MAQQSLFYSFIARGTVILVEFTDFKGNFTSVAAQYLENLPSSNNKFTYNCDGHTFNDLVENGFTYCVVAVDSAGREIPMAFLERVKEDFYKRYGGEKAATDQANSLNKEFGSNLKEHMQYCMDHPDEISNLAKAKAQVSEVKSLMMENIEKVLARGVICEML----GSSESQPQAFYIKRTQMKRKKWFQNMK 189          
BLAST of CB293971 vs. ExPASy Swiss-Prot
Match: VA727_ARATH (Vesicle-associated membrane protein 727 OS=Arabidopsis thaliana GN=VAMP727 PE=2 SV=1)

HSP 1 Score: 266.159 bits (679), Expect = 1.295e-70
Identity = 130/212 (61.32%), Postives = 164/212 (77.36%), Query Frame = 3
Query:   96 MGQQSLIYSFVARGTVILAEYTEFTGNFTGIAAQCLQKLPSSNNKFTYNCDGHTFNYLVDDGFTYCVVAVESVGRQVPIAFLERVKEDFIKRYGGGKAAT-------------------AVANGLNKEFGPKLKEHMQYCIDHPEEISKLAKVKAQVSEVKGVMMDNIEKVLDRGEKIELLVDRTENLRSQAQDFRQQGTQMRRKMWFQNMK 674
            M Q+ LIYSFVA+GTV+LAE+T ++GNF+ IA QCLQKLP++++K+TY+CDGHTFN+LVD+GF + VVA ES GR VP  FLERVKEDF KRY                          +VA  L++EFGP LKEHMQYC+ HPEE+SKL+K+KAQ++EVKG+MMDNIEKVLDRGEKIELLVD+TENL+ QA  F++QG Q+RRKMW Q+++
Sbjct:    1 MSQKGLIYSFVAKGTVVLAEHTPYSGNFSTIAVQCLQKLPTNSSKYTYSCDGHTFNFLVDNGFVFLVVADESTGRSVPFVFLERVKEDFKKRYEASIKNDERHPLADEDEDDDLFGDRFSVAYNLDREFGPILKEHMQYCMSHPEEMSKLSKLKAQITEVKGIMMDNIEKVLDRGEKIELLVDKTENLQFQADSFQRQGRQLRRKMWLQSLQ 212          
BLAST of CB293971 vs. ExPASy Swiss-Prot
Match: VA711_ARATH (Vesicle-associated membrane protein 711 OS=Arabidopsis thaliana GN=VAMP711 PE=2 SV=2)

HSP 1 Score: 147.517 bits (371), Expect = 6.715e-35
Identity = 73/190 (38.42%), Postives = 125/190 (65.79%), Query Frame = 3
Query:  108 SLIYSFVARGTVILAEYTEFTGNFTGIAAQCLQKLPSSNNK-FTYNCDGHTFNYLVDDGFTYCVVAVESVGRQVPIAFLERVKEDFIKRYGGGKAATAVANGLNKEFGPKLKEHMQYCIDHPEEISKLAKVKAQVSEVKGVMMDNIEKVLDRGEKIELLVDRTENLRSQAQDFRQQGTQMRRKMWFQNMK 674
            +++Y+ VARGTV+L+E+T  + N + IA Q L+K+P  N+   +Y+ D + F+    DG T   +A E+ GR++P AFLE + + F++ YG     TA+A  +N+EF   L + + Y  + P    ++ ++K ++++V+GVM++NI+KVLDRGE++ELLVD+T N++     FR+Q  + R  +W++N K
Sbjct:    2 AILYALVARGTVVLSEFTATSTNASTIAKQILEKVPGDNDSNVSYSQDRYVFHVKRTDGLTVLCMAEETAGRRIPFAFLEDIHQRFVRTYGRA-VHTALAYAMNEEFSRVLSQQIDYYSNDPNA-DRINRIKGEMNQVRGVMIENIDKVLDRGERLELLVDKTANMQGNTFRFRKQARRFRSNVWWRNCK 189          
BLAST of CB293971 vs. ExPASy Swiss-Prot
Match: VA713_ARATH (Vesicle-associated membrane protein 713 OS=Arabidopsis thaliana GN=VAMP713 PE=2 SV=1)

HSP 1 Score: 144.05 bits (362), Expect = 7.425e-34
Identity = 73/191 (38.22%), Postives = 126/191 (65.97%), Query Frame = 3
Query:  108 SLIYSFVARGTVILAEYTEFTGNFTGIAAQCLQKLPS--SNNKFTYNCDGHTFNYLVDDGFTYCVVAVESVGRQVPIAFLERVKEDFIKRYGGGKAATAVANGLNKEFGPKLKEHMQYCIDHPEEISKLAKVKAQVSEVKGVMMDNIEKVLDRGEKIELLVDRTENLRSQAQDFRQQGTQMRRKMWFQNMK 674
            ++I++ VARGTV+L+E++  + N + I+ Q L+KLP   S++  +Y+ D + F+    DG T   +A E+ GR +P AFL+ + + F+K YG     +A A  +N EF   L + M++  + P    +++++K ++S+V+ VM++NI+KVLDRGE++ELLVD+TEN++     FR+Q  + R  MW++N+K
Sbjct:    2 AIIFALVARGTVVLSEFSATSTNASSISKQILEKLPGNDSDSHMSYSQDRYIFHVKRTDGLTVLCMADETAGRNIPFAFLDDIHQRFVKTYGRA-IHSAQAYSMNDEFSRVLSQQMEFYSNDPNA-DRMSRIKGEMSQVRNVMIENIDKVLDRGERLELLVDKTENMQGNTFRFRKQARRYRTIMWWRNVK 190          
BLAST of CB293971 vs. ExPASy Swiss-Prot
Match: VA714_ARATH (Vesicle-associated membrane protein 714 OS=Arabidopsis thaliana GN=VAMP714 PE=2 SV=1)

HSP 1 Score: 141.739 bits (356), Expect = 3.685e-33
Identity = 71/191 (37.17%), Postives = 123/191 (64.40%), Query Frame = 3
Query:  108 SLIYSFVARGTVILAEYTEFTGNFTGIAAQCLQKLPS--SNNKFTYNCDGHTFNYLVDDGFTYCVVAVESVGRQVPIAFLERVKEDFIKRYGGGKAATAVANGLNKEFGPKLKEHMQYCIDHPEEISKLAKVKAQVSEVKGVMMDNIEKVLDRGEKIELLVDRTENLRSQAQDFRQQGTQMRRKMWFQNMK 674
            +++Y+ VARGTV+LAE++  TGN   +  + L+KL    S+ +  ++ D + F+ L  DG T+  +A ++ GR+VP ++LE +   F+K YG   A  A A  +N EF   L + M++   +P  +  L +V+ +VSE++ VM++NIEK+++RG++IELLVD+T  ++  +  FR+Q  ++RR +W +N K
Sbjct:    2 AIVYAVVARGTVVLAEFSAVTGNTGAVVRRILEKLSPEISDERLCFSQDRYIFHILRSDGLTFLCMANDTFGRRVPFSYLEEIHMRFMKNYGK-VAHNAPAYAMNDEFSRVLHQQMEFFSSNPS-VDTLNRVRGEVSEIRSVMVENIEKIMERGDRIELLVDKTATMQDSSFHFRKQSKRLRRALWMKNAK 190          
The following BLAST results are available for this feature:
BLAST of CB293971 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 19
Match NameE-valueIdentityDescription
VA725_ARATH2.121e-9787.18Vesicle-associated membrane protein 725 OS=Arabido... [more]
VA722_ARATH2.769e-9789.12Vesicle-associated membrane protein 722 OS=Arabido... [more]
VA726_ARATH1.795e-9687.05Putative vesicle-associated membrane protein 726 O... [more]
VA721_ARATH3.999e-9688.08Vesicle-associated membrane protein 721 OS=Arabido... [more]
VA724_ARATH3.634e-8172.68Vesicle-associated membrane protein 724 OS=Arabido... [more]
VA723_ARATH5.619e-7471.50Vesicle-associated membrane protein 723 OS=Arabido... [more]
VA727_ARATH1.295e-7061.32Vesicle-associated membrane protein 727 OS=Arabido... [more]
VA711_ARATH6.715e-3538.42Vesicle-associated membrane protein 711 OS=Arabido... [more]
VA713_ARATH7.425e-3438.22Vesicle-associated membrane protein 713 OS=Arabido... [more]
VA714_ARATH3.685e-3337.17Vesicle-associated membrane protein 714 OS=Arabido... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS01_01da11_g1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_01da11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB293971 ID=CB293971; Name=CB293971; organism=Citrus sinensis; type=EST; length=722bp
GCCTCTCTCTCTCTTCGTTCTTCTCTCTCTCTCAGGATTAGGGTTTGTTC
TTGTTGTTGTGGTCGTATTAGTAGTAGTTGTTTTTTATCAGAAAAATGGG
ACAGCAATCGTTGATCTACAGCTTCGTGGCTCGAGGAACGGTGATACTAG
CTGAGTACACGGAGTTCACCGGAAACTTCACCGGCATAGCTGCTCAGTGT
CTCCAGAAACTTCCTTCTAGTAACAACAAGTTCACTTACAATTGCGACGG
CCACACTTTTAACTACCTTGTTGATGACGGCTTCACTTACTGTGTGGTTG
CAGTTGAATCTGTTGGTCGACAGGTTCCAATTGCCTTCCTTGAGCGTGTG
AAAGAGGATTTTATAAAGAGATATGGTGGAGGAAAAGCTGCAACAGCAGT
CGCTAACGGCTTGAACAAGGAGTTTGGGCCCAAATTGAAGGAGCATATGC
AGTACTGCATCGATCATCCAGAGGAGATCAGCAAGCTTGCTAAAGTGAAG
GCGCAGGTGTCAGAAGTCAAAGGTGTTATGATGGATAACATAGAGAAGGT
TCTTGATCGTGGAGAGAAAATTGAGCTTCTGGTGGATAGAACAGAGAATC
TTCGTTCACAGGCGCAGGATTTCAGACAGCAGGGAACCCAGATGAGGAGA
AAGATGTGGTTTCAGAACATGAAGATAAAACTGATTGTTCTGGGAATCAT
AATTGCCTTGATTCTCATCATA
back to top