CB293973

Overview
NameCB293973
Unique NameCB293973
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length755
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CB293973_ssr10 microsatellite CB293973_ssr10:10..31. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig4376 contig Csv1_Contig4376:160..914. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB293973 vs. ExPASy Swiss-Prot
Match: TCTP_HEVBR (Translationally-controlled tumor protein homolog OS=Hevea brasiliensis GN=TCTP PE=2 SV=1)

HSP 1 Score: 272.707 bits (696), Expect = 1.505e-72
Identity = 138/168 (82.14%), Postives = 143/168 (85.12%), Query Frame = 3
Query:   87 MLVYQDLLTGDELLSDSFPYKEIENGILWEVEGKWVVQGAVDVDIGANPSXXXXXXXXXXXXXXXKVVDIDDTFRLQEQPAFDKKPFVTYMKRFIKLLTPELSEERQDIFKRNIEGATKFLLSKLSDLQFFVGESMRDDGCLVFAYYKEGATDPTFLYMADALKEVKC 590
            MLVYQDLLTGDELLSDSFPYKEI NGILWEVEGKWVVQGAVDVDIGANPS               KVVDI DTFRLQEQPAFDKK FVTYMKRFIKLLTP+L EE+Q+ FK+NIEGATKFLLSKLSDLQFFVGESM DDG LVFAYY+ GATDPTFLY A ALKEVKC
Sbjct:    1 MLVYQDLLTGDELLSDSFPYKEIHNGILWEVEGKWVVQGAVDVDIGANPSAEGADEDEGVDDQAVKVVDIVDTFRLQEQPAFDKKQFVTYMKRFIKLLTPKLDEEKQESFKKNIEGATKFLLSKLSDLQFFVGESMHDDGSLVFAYYRGGATDPTFLYFAYALKEVKC 168          
BLAST of CB293973 vs. ExPASy Swiss-Prot
Match: TCTP_ELAGV (Translationally-controlled tumor protein homolog OS=Elaeis guineensis var. tenera GN=TCTP PE=2 SV=1)

HSP 1 Score: 265.774 bits (678), Expect = 1.840e-70
Identity = 130/168 (77.38%), Postives = 143/168 (85.12%), Query Frame = 3
Query:   87 MLVYQDLLTGDELLSDSFPYKEIENGILWEVEGKWVVQGAVDVDIGANPSXXXXXXXXXXXXXXXKVVDIDDTFRLQEQPAFDKKPFVTYMKRFIKLLTPELSEERQDIFKRNIEGATKFLLSKLSDLQFFVGESMRDDGCLVFAYYKEGATDPTFLYMADALKEVKC 590
            MLVYQDLLTGDELLSDSFPYKEI NG+LWEVEGKWV+QGAV+VDIGANPS               KVVDI DTFRLQEQPAFDKK FVT+MKR+IK LTP+L  E+Q++FK++IEGATKFLLSKLSDLQFFVGESM DDGCLVFAYYK+GATDPTFLY A  LKE+KC
Sbjct:    1 MLVYQDLLTGDELLSDSFPYKEIHNGMLWEVEGKWVIQGAVNVDIGANPSAEGGEEDEGVDDQAVKVVDIVDTFRLQEQPAFDKKQFVTFMKRYIKNLTPKLDAEKQELFKKHIEGATKFLLSKLSDLQFFVGESMHDDGCLVFAYYKDGATDPTFLYFAYGLKEIKC 168          
BLAST of CB293973 vs. ExPASy Swiss-Prot
Match: TCTP_CUCMA (Translationally-controlled tumor protein homolog OS=Cucurbita maxima GN=TCTP PE=2 SV=1)

HSP 1 Score: 259.225 bits (661), Expect = 1.722e-68
Identity = 125/168 (74.40%), Postives = 139/168 (82.74%), Query Frame = 3
Query:   87 MLVYQDLLTGDELLSDSFPYKEIENGILWEVEGKWVVQGAVDVDIGANPSXXXXXXXXXXXXXXXKVVDIDDTFRLQEQPAFDKKPFVTYMKRFIKLLTPELSEERQDIFKRNIEGATKFLLSKLSDLQFFVGESMRDDGCLVFAYYKEGATDPTFLYMADALKEVKC 590
            MLVYQDLLTGDELLSDSFPYKE+ENG++WEVEGKWVVQGAVDVDIGANPS               KVVDI DTFRLQEQP  DKK F+ Y+K+FIKLLTP+L  E+Q+ FK+NIEGATKFLL KL D +FFVGESM DD C+VFAYY+EGATDPTFLY+A ALKEVKC
Sbjct:    1 MLVYQDLLTGDELLSDSFPYKELENGMIWEVEGKWVVQGAVDVDIGANPSAEGDGEDEGVDDQAVKVVDIVDTFRLQEQPTMDKKQFIAYIKKFIKLLTPKLEGEKQEAFKKNIEGATKFLLPKLKDFRFFVGESMHDDSCIVFAYYREGATDPTFLYLAPALKEVKC 168          
BLAST of CB293973 vs. ExPASy Swiss-Prot
Match: TCTP_SOYBN (Translationally-controlled tumor protein homolog OS=Glycine max GN=TCTP PE=2 SV=1)

HSP 1 Score: 257.684 bits (657), Expect = 5.010e-68
Identity = 128/168 (76.19%), Postives = 140/168 (83.33%), Query Frame = 3
Query:   87 MLVYQDLLTGDELLSDSFPYKEIENGILWEVEGKWVVQGAVDVDIGANPSXXXXXXXXXXXXXXXKVVDIDDTFRLQEQPAFDKKPFVTYMKRFIKLLTPELSEERQDIFKRNIEGATKFLLSKLSDLQFFVGESMRDDGCLVFAYYKEGATDPTFLYMADALKEVKC 590
            MLVYQDLLTGDELLSDSF YKEIENG+LWEVEGKWVV+GAVDVDIGANPS               KVVDI DTFRLQEQPAFDKK FVT+MKRFIK LTP+L  E+Q++FK++IEGATK+LLSK+ D QFFVGESM DD CLVFAYYK+GA DPTFLY A ALKEVKC
Sbjct:    1 MLVYQDLLTGDELLSDSFRYKEIENGMLWEVEGKWVVKGAVDVDIGANPSAEGGGEDEGVDDAAVKVVDIVDTFRLQEQPAFDKKQFVTFMKRFIKNLTPKLDAEQQELFKKHIEGATKYLLSKIKDFQFFVGESMGDDACLVFAYYKDGAADPTFLYFAYALKEVKC 168          
BLAST of CB293973 vs. ExPASy Swiss-Prot
Match: TCTP_ORYSJ (Translationally-controlled tumor protein homolog OS=Oryza sativa subsp. japonica GN=TCTP PE=1 SV=1)

HSP 1 Score: 253.062 bits (645), Expect = 1.234e-66
Identity = 125/168 (74.40%), Postives = 138/168 (82.14%), Query Frame = 3
Query:   87 MLVYQDLLTGDELLSDSFPYKEIENGILWEVEGKWVVQGAVDVDIGANPSXXXXXXXXXXXXXXXKVVDIDDTFRLQEQPAFDKKPFVTYMKRFIKLLTPELSEERQDIFKRNIEGATKFLLSKLSDLQFFVGESMRDDGCLVFAYYKEGATDPTFLYMADALKEVKC 590
            MLVYQDLLTGDELLSDSFPY+EIENGILWEV+GKWVVQGA+DVDIGANPS               KVVDI DTFRLQEQP FDKK FVT+MKR+IK L+ +L  E+Q+ FK+NIEGATK+LL KL DLQFFVGESM DDG LVFAYYK+GATDPTFLY +  LKEVKC
Sbjct:    1 MLVYQDLLTGDELLSDSFPYREIENGILWEVDGKWVVQGAIDVDIGANPSAEGGGDDEGVDDQAVKVVDIVDTFRLQEQPPFDKKQFVTFMKRYIKNLSAKLDAEKQEEFKKNIEGATKYLLGKLKDLQFFVGESMHDDGGLVFAYYKDGATDPTFLYFSHGLKEVKC 168          
BLAST of CB293973 vs. ExPASy Swiss-Prot
Match: TCTP_SOLLC (Translationally-controlled tumor protein homolog OS=Solanum lycopersicum GN=TCTP PE=2 SV=1)

HSP 1 Score: 252.677 bits (644), Expect = 1.612e-66
Identity = 123/168 (73.21%), Postives = 137/168 (81.55%), Query Frame = 3
Query:   87 MLVYQDLLTGDELLSDSFPYKEIENGILWEVEGKWVVQGAVDVDIGANPSXXXXXXXXXXXXXXXKVVDIDDTFRLQEQPAFDKKPFVTYMKRFIKLLTPELSEERQDIFKRNIEGATKFLLSKLSDLQFFVGESMRDDGCLVFAYYKEGATDPTFLYMADALKEVKC 590
            MLVYQDLLTGDELLSDSFPYKE+ENG+LWEV+GKWVVQGAVDV+IGANPS               +VVDI DTFRLQEQPAFDKK FVT+MKR+IK LTP+L  E Q+ FK+NIE ATKFLL K+ DLQFFVGESM DDG LVFAYYKEG+ DP FLY+A  LKE+KC
Sbjct:    1 MLVYQDLLTGDELLSDSFPYKEVENGVLWEVQGKWVVQGAVDVNIGANPSAEGGCEDEGVDDQAVRVVDIVDTFRLQEQPAFDKKQFVTFMKRYIKNLTPKLEGETQEAFKKNIEAATKFLLQKIKDLQFFVGESMHDDGALVFAYYKEGSADPPFLYIAPGLKEIKC 168          
BLAST of CB293973 vs. ExPASy Swiss-Prot
Match: TCTP_SOLTU (Translationally-controlled tumor protein homolog OS=Solanum tuberosum GN=TCTP PE=2 SV=2)

HSP 1 Score: 250.751 bits (639), Expect = 6.124e-66
Identity = 123/168 (73.21%), Postives = 136/168 (80.95%), Query Frame = 3
Query:   87 MLVYQDLLTGDELLSDSFPYKEIENGILWEVEGKWVVQGAVDVDIGANPSXXXXXXXXXXXXXXXKVVDIDDTFRLQEQPAFDKKPFVTYMKRFIKLLTPELSEERQDIFKRNIEGATKFLLSKLSDLQFFVGESMRDDGCLVFAYYKEGATDPTFLYMADALKEVKC 590
            MLVYQDLLTGDELLSDSFPYKEI+NG+LWEV+GKWVVQGAVDV+IGANPS               KVVDI DTFRLQEQPAFDKK FVTY+KR+IK LTP+L  E Q+ FK+NIE ATKFLLSKL D QFFVGE M DD  LVFAYYK+G+ DPTFLY+A  LKE+KC
Sbjct:    1 MLVYQDLLTGDELLSDSFPYKEIQNGMLWEVQGKWVVQGAVDVNIGANPSAEGGGEDEGVDDQAVKVVDIVDTFRLQEQPAFDKKQFVTYIKRYIKNLTPKLEGEAQEAFKKNIESATKFLLSKLKDFQFFVGEGMHDDSALVFAYYKDGSADPTFLYLAPGLKEIKC 168          
BLAST of CB293973 vs. ExPASy Swiss-Prot
Match: TCTP_FRAAN (Translationally-controlled tumor protein homolog OS=Fragaria ananassa GN=TCTP PE=2 SV=1)

HSP 1 Score: 248.825 bits (634), Expect = 2.327e-65
Identity = 127/170 (74.71%), Postives = 139/170 (81.76%), Query Frame = 3
Query:   87 MLVYQDLLTGDELLSDSFPYKEIENGILWEVEGKWVVQGAVDVDIGANPSXXXXXXXXXXXXXXX--KVVDIDDTFRLQEQPAFDKKPFVTYMKRFIKLLTPELSEERQDIFKRNIEGATKFLLSKLSDLQFFVGESMRDDGCLVFAYYKEGATDPTFLYMADALKEVKC 590
            MLVYQDLL+GDELLSDSFPYKEI+NG+LWEV+GKWVVQGAVDVDIGANPS                 KVVDI DTFRLQEQP FDKK FVT++KR+IKLLTP+L  E+Q+ FK+NIEGATKFLLSKLSDLQFFVGESM DD  LVFA YKEGATDP F+Y A  LKEVKC
Sbjct:    1 MLVYQDLLSGDELLSDSFPYKEIQNGVLWEVDGKWVVQGAVDVDIGANPSAEGADADADEGVDDQTVKVVDIVDTFRLQEQPPFDKKQFVTWVKRYIKLLTPKLEGEQQETFKKNIEGATKFLLSKLSDLQFFVGESMGDDTSLVFASYKEGATDPIFIYFAHGLKEVKC 170          
BLAST of CB293973 vs. ExPASy Swiss-Prot
Match: TCTP_ARATH (Translationally-controlled tumor protein homolog OS=Arabidopsis thaliana GN=TCTP PE=1 SV=2)

HSP 1 Score: 248.825 bits (634), Expect = 2.327e-65
Identity = 123/168 (73.21%), Postives = 135/168 (80.36%), Query Frame = 3
Query:   87 MLVYQDLLTGDELLSDSFPYKEIENGILWEVEGKWVVQGAVDVDIGANPSXXXXXXXXXXXXXXXKVVDIDDTFRLQEQPAFDKKPFVTYMKRFIKLLTPELSEERQDIFKRNIEGATKFLLSKLSDLQFFVGESMRDDGCLVFAYYKEGATDPTFLYMADALKEVKC 590
            MLVYQDLLTGDELLSDSFPYKEIENGILWEVEGKWV  GAVDV+IGANPS               KVVDI DTFRLQEQP +DKK F+ Y+K++IKLLTP+LSEE Q +FK+ IEGATKFLL +LSD QFFVGE M DD  LVFAYYKEG+T+PTFLY A  LKEVKC
Sbjct:    1 MLVYQDLLTGDELLSDSFPYKEIENGILWEVEGKWVTVGAVDVNIGANPSAEEGGEDEGVDDSTQKVVDIVDTFRLQEQPTYDKKGFIAYIKKYIKLLTPKLSEEDQAVFKKGIEGATKFLLPRLSDFQFFVGEGMHDDSTLVFAYYKEGSTNPTFLYFAHGLKEVKC 168          
BLAST of CB293973 vs. ExPASy Swiss-Prot
Match: TCTP_PSEMZ (Translationally-controlled tumor protein homolog OS=Pseudotsuga menziesii GN=TCTP PE=2 SV=1)

HSP 1 Score: 245.358 bits (625), Expect = 2.573e-64
Identity = 123/168 (73.21%), Postives = 137/168 (81.55%), Query Frame = 3
Query:   87 MLVYQDLLTGDELLSDSFPYKEIENGILWEVEGKWVVQGAVDVDIGANPSXXXXXXXXXXXXXXXKVVDIDDTFRLQEQPAFDKKPFVTYMKRFIKLLTPELSEERQDIFKRNIEGATKFLLSKLSDLQFFVGESMRDDGCLVFAYYKEGATDPTFLYMADALKEVKC 590
            M+VYQDLL+GDELLSDSFPYKE+ NG+LWEVEGKWVVQGAVDVDIGANPS               KVVDI DTFRLQEQP FDKK F+ ++KR+IK L  +LSEERQ  FK+N+EGA K L+SKLSDLQFFVGESM DDG +VFAYYK+GATDPTFLY AD LKEVKC
Sbjct:    1 MIVYQDLLSGDELLSDSFPYKELYNGVLWEVEGKWVVQGAVDVDIGANPSAEGGDEEGVKIRLV-KVVDIVDTFRLQEQPPFDKKQFLGFIKRYIKNLATKLSEERQAEFKKNVEGAAKMLVSKLSDLQFFVGESMHDDGSMVFAYYKDGATDPTFLYFADGLKEVKC 167          
The following BLAST results are available for this feature:
BLAST of CB293973 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 70
Match NameE-valueIdentityDescription
TCTP_HEVBR1.505e-7282.14Translationally-controlled tumor protein homolog O... [more]
TCTP_ELAGV1.840e-7077.38Translationally-controlled tumor protein homolog O... [more]
TCTP_CUCMA1.722e-6874.40Translationally-controlled tumor protein homolog O... [more]
TCTP_SOYBN5.010e-6876.19Translationally-controlled tumor protein homolog O... [more]
TCTP_ORYSJ1.234e-6674.40Translationally-controlled tumor protein homolog O... [more]
TCTP_SOLLC1.612e-6673.21Translationally-controlled tumor protein homolog O... [more]
TCTP_SOLTU6.124e-6673.21Translationally-controlled tumor protein homolog O... [more]
TCTP_FRAAN2.327e-6574.71Translationally-controlled tumor protein homolog O... [more]
TCTP_ARATH2.327e-6573.21Translationally-controlled tumor protein homolog O... [more]
TCTP_PSEMZ2.573e-6473.21Translationally-controlled tumor protein homolog O... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS01_02ac06_g1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_02ac06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB293973 ID=CB293973; Name=CB293973; organism=Citrus sinensis; type=EST; length=755bp
TCCGCTGCGTCTCTCTCTCTCTCTCTCTCTCCAGTTTTCTCCGTTGATTA
TTTTTCTTTTTTGTGTTCGCGAGAGAGACTGCAATCATGTTGGTCTATCA
AGATCTCCTCACCGGTGATGAGCTTCTCTCCGATTCTTTTCCCTACAAGG
AAATTGAGAATGGGATTCTGTGGGAAGTTGAGGGAAAGTGGGTTGTACAA
GGAGCCGTTGATGTTGACATTGGTGCAAATCCTTCTGCCGAAGGAGCTGA
TGAGGATGAGGGTGTTGATGACCAAGCCGTGAAGGTGGTTGACATTGACG
ACACATTCAGGCTACAGGAGCAACCCGCTTTTGACAAGAAGCCGTTTGTA
ACATACATGAAGAGATTCATCAAGTTGCTGACGCCCGAGCTGAGTGAGGA
GAGGCAGGATATATTTAAGAGGAATATTGAGGGAGCGACCAAGTTCTTGC
TCTCCAAGCTCAGTGACCTTCAATTCTTTGTTGGGGAGAGCATGCGTGAT
GATGGCTGTCTTGTCTTTGCTTACTACAAGGAAGGTGCGACCGACCCAAC
ATTTTTGTATATGGCTGATGCATTGAAGGAGGTGAAGTGCTAAGCTGGGC
TTCGAAGAGGAAGTGCCTGCTGTAGTTCTAGTTTTAATTATTGCCCGCGG
TTATTTTTATGTATCGTTTGTGCTGGTTAACTCGGGACTTGCGCTTGCTG
CTTTTTAGTTTTTATTTTGACATATCCACTATGTTTTTCTGCTCTTAATT
ATTGG
back to top