CB293989

Overview
NameCB293989
Unique NameCB293989
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length823
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CB293989_ssr40 microsatellite CB293989_ssr40:40..51. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig2838 contig Csv1_Contig2838:38..860. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB293989 vs. ExPASy Swiss-Prot
Match: MPCP_MOUSE (Phosphate carrier protein, mitochondrial OS=Mus musculus GN=Slc25a3 PE=1 SV=1)

HSP 1 Score: 213.001 bits (541), Expect = 1.635e-54
Identity = 103/190 (54.21%), Postives = 123/190 (64.74%), Query Frame = 2
Query:  254 RRNFVVAAPSEPGKIEMYSPAFYAACTVGGILSCGLTHTAVTPLDLVKCNMQIDPVKYKSISSGFGVLLKEQGIRGFFRGWVPTLLGYSAQGACXXXXXXXXXXXXSDIAGPEYAAKYKTLIYLAGSASAEFIADVALCPFEAVKVRVQTQPGFARGLGDGLPKFVKSDGALGLYKGIVPLWGRQIPYTM 823
            R   + AA  E    E  S  +YA C  GG+LSCGLTHTAV PLDLVKC MQ+DP KYK I +GF + LKE G+RG  +GW PTL+GYS QG C            S+I G E    ++T +YLA SASAEF AD+AL P EA KVR+QTQPG+A  L + +PK  K +G    YKG+ PLW RQIPYTM
Sbjct:   38 RSRHLAAAAVEEYSCEFGSMKYYALCGFGGVLSCGLTHTAVVPLDLVKCRMQVDPQKYKGIFNGFSITLKEDGVRGLAKGWAPTLIGYSMQGLCKFGFYEVFKALYSNILGEENTYLWRTSLYLASSASAEFFADIALAPMEAAKVRIQTQPGYANTLREAVPKMYKEEGLNAFYKGVAPLWMRQIPYTM 227          
BLAST of CB293989 vs. ExPASy Swiss-Prot
Match: MPCP_PONAB (Phosphate carrier protein, mitochondrial OS=Pongo abelii GN=SLC25A3 PE=2 SV=1)

HSP 1 Score: 211.846 bits (538), Expect = 3.643e-54
Identity = 103/186 (55.38%), Postives = 120/186 (64.52%), Query Frame = 2
Query:  266 VVAAPSEPGKIEMYSPAFYAACTVGGILSCGLTHTAVTPLDLVKCNMQIDPVKYKSISSGFGVLLKEQGIRGFFRGWVPTLLGYSAQGACXXXXXXXXXXXXSDIAGPEYAAKYKTLIYLAGSASAEFIADVALCPFEAVKVRVQTQPGFARGLGDGLPKFVKSDGALGLYKGIVPLWGRQIPYTM 823
            + AA  E    E  S  +YA C  GG+LSCGLTHTAV PLDLVKC MQ+DP KYK I +GF V LKE G+RG  +GW PT LGYS QG C            S++ G E    ++T +YLA SASAEF AD+AL P EA KVR+QTQPG+A  L D  PK  K +G    YKG+ PLW RQIPYTM
Sbjct:   46 LAAAAVEEYSCEFGSAKYYALCGFGGVLSCGLTHTAVVPLDLVKCRMQVDPQKYKGIFNGFSVTLKEDGVRGLAKGWAPTFLGYSMQGLCKFGFYEVFKVLYSNMLGEENTYLWRTSLYLAASASAEFFADIALAPMEAAKVRIQTQPGYANTLRDAAPKMYKEEGLKAFYKGVAPLWMRQIPYTM 231          
BLAST of CB293989 vs. ExPASy Swiss-Prot
Match: MPCP_RAT (Phosphate carrier protein, mitochondrial OS=Rattus norvegicus GN=Slc25a3 PE=1 SV=1)

HSP 1 Score: 211.46 bits (537), Expect = 4.758e-54
Identity = 102/190 (53.68%), Postives = 123/190 (64.74%), Query Frame = 2
Query:  254 RRNFVVAAPSEPGKIEMYSPAFYAACTVGGILSCGLTHTAVTPLDLVKCNMQIDPVKYKSISSGFGVLLKEQGIRGFFRGWVPTLLGYSAQGACXXXXXXXXXXXXSDIAGPEYAAKYKTLIYLAGSASAEFIADVALCPFEAVKVRVQTQPGFARGLGDGLPKFVKSDGALGLYKGIVPLWGRQIPYTM 823
            R   + AA  E    E  S  +YA C  GG+LSCGLTHTAV PLDLVKC MQ+DP KYK I +GF + LKE G+RG  +GW PTL+GYS QG C            S+I G E    ++T +YLA SASAEF AD+AL P EA KVR+QTQPG+A  L + +PK  K +G    YKG+ P+W RQIPYTM
Sbjct:   37 RSRHLAAAAVEGYSCEFGSMKYYALCGFGGVLSCGLTHTAVVPLDLVKCRMQVDPQKYKGIFNGFSITLKEDGVRGLAKGWAPTLIGYSMQGLCKFGFYEVFKALYSNILGEENTYLWRTSLYLAASASAEFFADIALAPMEAAKVRIQTQPGYANTLREAVPKMYKEEGLNAFYKGVAPVWMRQIPYTM 226          
BLAST of CB293989 vs. ExPASy Swiss-Prot
Match: MPCP_BOVIN (Phosphate carrier protein, mitochondrial OS=Bos taurus GN=SLC25A3 PE=1 SV=1)

HSP 1 Score: 210.305 bits (534), Expect = 1.060e-53
Identity = 102/189 (53.97%), Postives = 121/189 (64.02%), Query Frame = 2
Query:  257 RNFVVAAPSEPGKIEMYSPAFYAACTVGGILSCGLTHTAVTPLDLVKCNMQIDPVKYKSISSGFGVLLKEQGIRGFFRGWVPTLLGYSAQGACXXXXXXXXXXXXSDIAGPEYAAKYKTLIYLAGSASAEFIADVALCPFEAVKVRVQTQPGFARGLGDGLPKFVKSDGALGLYKGIVPLWGRQIPYTM 823
            RN   AA  E    +  S  F+  C +GGI+SCG THTA+ PLDLVKC MQ+DP KYKSI +GF V LKE G RG  +GW PT +GYS QG C            S++ G E A  ++T +YLA SASAEF AD+AL P EA KVR+QTQPG+A  L D  PK  K +G    YKG+ PLW RQIPYTM
Sbjct:   44 RNLAAAAVEEQYSCDYGSGRFFILCGLGGIISCGTTHTALVPLDLVKCRMQVDPQKYKSIFNGFSVTLKEDGFRGLAKGWAPTFIGYSLQGLCKFGFYEVFKVLYSNMLGEENAYLWRTSLYLAASASAEFFADIALAPMEAAKVRIQTQPGYANTLRDAAPKMYKEEGLKAFYKGVAPLWMRQIPYTM 232          
BLAST of CB293989 vs. ExPASy Swiss-Prot
Match: MPCP_HUMAN (Phosphate carrier protein, mitochondrial OS=Homo sapiens GN=SLC25A3 PE=1 SV=2)

HSP 1 Score: 209.149 bits (531), Expect = 2.362e-53
Identity = 101/189 (53.44%), Postives = 120/189 (63.49%), Query Frame = 2
Query:  257 RNFVVAAPSEPGKIEMYSPAFYAACTVGGILSCGLTHTAVTPLDLVKCNMQIDPVKYKSISSGFGVLLKEQGIRGFFRGWVPTLLGYSAQGACXXXXXXXXXXXXSDIAGPEYAAKYKTLIYLAGSASAEFIADVALCPFEAVKVRVQTQPGFARGLGDGLPKFVKSDGALGLYKGIVPLWGRQIPYTM 823
            RN   AA  E    +  S  F+  C +GGI+SCG THTA+ PLDLVKC MQ+DP KYK I +GF V LKE G+RG  +GW PT LGYS QG C            S++ G E    ++T +YLA SASAEF AD+AL P EA KVR+QTQPG+A  L D  PK  K +G    YKG+ PLW RQIPYTM
Sbjct:   44 RNLAAAAVEEQYSCDYGSGRFFILCGLGGIISCGTTHTALVPLDLVKCRMQVDPQKYKGIFNGFSVTLKEDGVRGLAKGWAPTFLGYSMQGLCKFGFYEVFKVLYSNMLGEENTYLWRTSLYLAASASAEFFADIALAPMEAAKVRIQTQPGYANTLRDAAPKMYKEEGLKAFYKGVAPLWMRQIPYTM 232          
BLAST of CB293989 vs. ExPASy Swiss-Prot
Match: MPCP_CAEEL (Phosphate carrier protein, mitochondrial OS=Caenorhabditis elegans GN=F01G4.6 PE=2 SV=1)

HSP 1 Score: 195.667 bits (496), Expect = 2.702e-49
Identity = 94/184 (51.09%), Postives = 119/184 (64.67%), Query Frame = 2
Query:  272 AAPSEPGKIEMYSPAFYAACTVGGILSCGLTHTAVTPLDLVKCNMQIDPVKYKSISSGFGVLLKEQGIRGFFRGWVPTLLGYSAQGACXXXXXXXXXXXXSDIAGPEYAAKYKTLIYLAGSASAEFIADVALCPFEAVKVRVQTQPGFARGLGDGLPKFVKSDGALGLYKGIVPLWGRQIPYTM 823
            +A S PG++E  S  +YA C +GG+LSCG+THTA+ PLDLVKC +Q++P KY  I++GF   + E+G R   +GW PTLLGYSAQG              +D+ G E A  Y+T +YLA SASAEF AD+ L P EA KVR+QT PG    L    P   K++G  G YKG+ PLW RQIPYTM
Sbjct:   27 SAVSAPGQVEFGSGKYYAYCALGGVLSCGITHTAIVPLDLVKCRIQVNPEKYTGIATGFRTTIAEEGARALVKGWAPTLLGYSAQGLGKFGFYEIFKNVYADMLGEENAYLYRTSLYLAASASAEFFADILLAPMEATKVRIQTSPGAPPTLRGCAPMIYKAEGLTGFYKGLPPLWMRQIPYTM 210          
BLAST of CB293989 vs. ExPASy Swiss-Prot
Match: MPCP_SCHPO (Probable mitochondrial phosphate carrier protein OS=Schizosaccharomyces pombe GN=SPBC1703.13c PE=2 SV=1)

HSP 1 Score: 179.874 bits (455), Expect = 1.534e-44
Identity = 87/184 (47.28%), Postives = 121/184 (65.76%), Query Frame = 2
Query:  278 PSEPGK-IEMYSPAFYAACTVGGILSCGLTHTAVTPLDLVKCNMQIDPVKYKSISSGFGVLLKEQGIRGFFRGWVPTLLGYSAQGACXXXXXXXXXXXXSDIAGPEYAAKYKTLIYLAGSASAEFIADVALCPFEAVKVRVQT-QPGFARGLGDGLPKFVKSDGALGLYKGIVPLWGRQIPYTM 823
            P+ P K +++Y+P +Y  CT+GG+L+CG TH+A+TPLDL+KC  Q++P  Y    +GF  +L ++G+RG + G +PTL+GYS QG              S + G + A +Y+T IYLA SASAE +AD+ LCP EA+KVRVQT  P FA    +   K V ++G   LY+G+ PLW RQIPYTM
Sbjct:    8 PAPPKKTLQLYTPQYYGLCTLGGLLACGTTHSAITPLDLIKCRKQVNPNIYPGNIAGFKTILSKEGLRGLYTGGMPTLIGYSLQGCGKYGFYELFKHKYSTLVGAQKAHEYRTSIYLAASASAELLADIMLCPMEAIKVRVQTSNPRFANTTREAWSKIVTNEGFGTLYRGLAPLWFRQIPYTM 191          
BLAST of CB293989 vs. ExPASy Swiss-Prot
Match: MPCP_CHOFU (Phosphate carrier protein, mitochondrial OS=Choristoneura fumiferana PE=2 SV=1)

HSP 1 Score: 175.252 bits (443), Expect = 3.779e-43
Identity = 86/176 (48.86%), Postives = 113/176 (64.20%), Query Frame = 2
Query:  299 EMYSPAFYAACTVGGILSCGLTHTAVTPLDLVKCNMQIDPVKYKSISSGFGVLLKEQGIRGFFRGWVPTLLGYSAQGACXXXXXXXXXXXXSDIAGPEYAAKYKTLIYLAGSASAEFIADVALCPFEAVKVRVQTQPGFARGLGDGLPKFVKSDGALG-LYKGIVPLWGRQIPYTM 823
            E  S  ++A C +GGILSCG+THTAV PLDLVKC +Q+D  KYK++ +GF V ++E+G+RG  +GW PT +GYS QG C            +++   E A  Y+T +YLA SASAEF AD+AL P EA KVR+QT PG  +     + +     GA     + +VPLWGRQIPYTM
Sbjct:   42 EFGSTKYFALCGLGGILSCGITHTAVVPLDLVKCRLQVDADKYKNVVNGFRVSVREEGLRGLAKGWAPTFIGYSLQGLCKFGLYEVFKVQYNNMLDEETAYTYRTFVYLAASASAEFFADIALSPLEAAKVRIQTMPGVRQHTARRVAQDGPERGAWARSTRALVPLWGRQIPYTM 217          
BLAST of CB293989 vs. ExPASy Swiss-Prot
Match: PIC2_YEAST (Mitochondrial phosphate carrier protein 2 OS=Saccharomyces cerevisiae GN=PIC2 PE=1 SV=1)

HSP 1 Score: 158.303 bits (399), Expect = 4.780e-38
Identity = 82/182 (45.05%), Postives = 111/182 (60.99%), Query Frame = 2
Query:  284 EPGKIEMYSPAFYAACTVGGILSCGLTHTAVTPLDLVKCNMQIDPVKYKSISSGFGVLLKEQGIRGFFRGWVPTLLGYSAQGACXXXXXXXXXXXXSDIAGPEYAAKYKTLIYLAGSASAEFIADVALCPFEAVKVRVQ-TQPGFARGLGDGLPK-FVKSDGALGLYKGIVPLWGRQIPYTM 823
            +P KI++Y+  FYA CT+GGI++CG TH+++TPLDLVKC +Q++P  Y S   GF  ++  +G +  + G+  T +GYS QGA             S    P         +YL  SA+AEF+AD+ LCPFEA+KV+ Q T P F   + DG  K + +S G    YKGIVPLW RQIPYTM
Sbjct:    6 QPRKIQLYTKEFYATCTLGGIIACGPTHSSITPLDLVKCRLQVNPKLYTSNLQGFRKIIANEGWKKVYTGFGATFVGYSLQGAGKYGGYEYFKHLYSSWLSP------GVTVYLMASATAEFLADIMLCPFEAIKVKQQTTMPPFCNNVVDGWKKMYAESGGMKAFYKGIVPLWCRQIPYTM 181          
BLAST of CB293989 vs. ExPASy Swiss-Prot
Match: MCFN_DICDI (Mitochondrial substrate carrier family protein N OS=Dictyostelium discoideum GN=mcfN PE=3 SV=2)

HSP 1 Score: 140.198 bits (352), Expect = 1.347e-32
Identity = 71/172 (41.28%), Postives = 104/172 (60.47%), Query Frame = 2
Query:  308 SPAFYAACTVGGILSCGLTHTAVTPLDLVKCNMQIDPVKYKSISSGFGVLLKEQGIRGFFRGWVPTLLGYSAQGACXXXXXXXXXXXXSDIAGPEYAAKYKTLIYLAGSASAEFIADVALCPFEAVKVRVQTQPGFARGLGDGLPKFVKSDGALGLYKGIVPLWGRQIPYTM 823
            +P+ +     GG LSC +TH+ V PLD+VK  +Q +P KY  + +GF  ++KEQG  G  +G  PT +GY+ QG              +D  G E A +++  I+LA SA+AE IAD+ALCP EAV++R+  +P FA+   +   K  K +G LG YKG+ P+  +Q+PYTM
Sbjct:    6 TPSLFLKYGFGGALSCSITHSLVVPLDVVKTLLQTNPGKYTGMMNGFSTVIKEQGPSGLLQGLGPTAVGYALQGFLKFGFYEVFKKTYADAVG-EKADQFRIPIWLAASATAEVIADIALCPNEAVRIRLVAEPTFAKSPVEAFGKIFKQEGVLGFYKGLPPILLKQVPYTM 176          
The following BLAST results are available for this feature:
BLAST of CB293989 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 12
Match NameE-valueIdentityDescription
MPCP_MOUSE1.635e-5454.21Phosphate carrier protein, mitochondrial OS=Mus mu... [more]
MPCP_PONAB3.643e-5455.38Phosphate carrier protein, mitochondrial OS=Pongo ... [more]
MPCP_RAT4.758e-5453.68Phosphate carrier protein, mitochondrial OS=Rattus... [more]
MPCP_BOVIN1.060e-5353.97Phosphate carrier protein, mitochondrial OS=Bos ta... [more]
MPCP_HUMAN2.362e-5353.44Phosphate carrier protein, mitochondrial OS=Homo s... [more]
MPCP_CAEEL2.702e-4951.09Phosphate carrier protein, mitochondrial OS=Caenor... [more]
MPCP_SCHPO1.534e-4447.28Probable mitochondrial phosphate carrier protein O... [more]
MPCP_CHOFU3.779e-4348.86Phosphate carrier protein, mitochondrial OS=Choris... [more]
PIC2_YEAST4.780e-3845.05Mitochondrial phosphate carrier protein 2 OS=Sacch... [more]
MCFN_DICDI1.347e-3241.28Mitochondrial substrate carrier family protein N O... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS01_05aa08_g1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_05aa08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB293989 ID=CB293989; Name=CB293989; organism=Citrus sinensis; type=EST; length=823bp
GCCCATTGAAGGAGAAGAGAAAGAGAAAATTAGAAGAATTCTCTCTCTCT
CGCTCTTTTTCTCTATAATTCAATCAAGCTTTTAACTCTCAAAATCAAAT
TTCAAAAATTCCGAAATGGCCCTCACAGAATCTTATAGGAAAAACTCTCT
GATACCAAGCTACCTCTACTCCTCCCAAACATCCTTCCCGTCCACGGCGG
CTTTCAATGGAGCGGCAGCAGCCGCCACGTCGCCGGCTACTCCATCCACG
GCGAGGAGGAACTTCGTTGTTGCGGCACCGAGCGAGCCAGGGAAGATAGA
GATGTACTCCCCTGCATTCTACGCCGCTTGTACCGTCGGCGGGATCCTCA
GCTGCGGCCTCACTCACACGGCCGTCACTCCTCTTGACCTCGTCAAGTGC
AATATGCAGATTGATCCTGTTAAGTACAAAAGCATATCATCTGGTTTTGG
AGTTTTGCTCAAGGAACAGGGAATCAGGGGCTTCTTCAGGGGATGGGTAC
CTACCTTGCTTGGTTACAGCGCCCAAGGTGCTTGCAAGTTTGGATTCTAC
GAGTTCTTCAAGAAGTACTACTCTGACATTGCTGGTCCAGAGTATGCTGC
TAAGTACAAGACTTTAATCTACCTTGCTGGCTCTGCTTCTGCTGAGTTCA
TTGCTGATGTTGCTCTTTGCCCCTTTGAGGCCGTGAAGGTCCGTGTTCAG
ACTCAGCCTGGTTTTGCCAGAGGTTTGGGTGATGGACTTCCCAAGTTTGT
TAAATCTGATGGCGCTCTTGGTTTGTACAAGGGTATTGTTCCTCTTTGGG
GGCGTCAGATTCCATATACTATG
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