CB293991

Overview
NameCB293991
Unique NameCB293991
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length806
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CB293991_ssr91 microsatellite CB293991_ssr91:91..100. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of CB293991 vs. ExPASy Swiss-Prot
Match: U4974_RICCO (UPF0497 membrane protein 4 OS=Ricinus communis GN=RCOM_0679870 PE=2 SV=1)

HSP 1 Score: 189.119 bits (479), Expect = 2.434e-47
Identity = 91/150 (60.67%), Postives = 112/150 (74.67%), Query Frame = -3
Query:  301 VRENYFGIDVGLRVLLFSATLVSVIVMATAKQTELVSPAGIP-IRVSVKAKFTDSPAFIYFVAALSVACLYSIITMLASLSVVSKPASAKRLLLYFAFWDVVMLXXXXXXXXXXXXXGYIGLKGNSHSRWTKICNVYDKYCRHIGSATGV 747
            +R +YF +DVGLRV LF+ TL +++VM+TAKQTEL    G+P +RV V+AKF  SPAFIYFVAALSVACLYSIIT LASL V++KP  A + L Y+A WDV+ML              YIGLKGNSH+RWTKICNVYD +C+H+GSA  +
Sbjct:   25 LRRDYFAVDVGLRVFLFATTLTAIVVMSTAKQTELAPVPGVPGLRVPVEAKFNHSPAFIYFVAALSVACLYSIITTLASLGVIAKPIYATKFLFYYALWDVLMLGIVAAATGAAGGVAYIGLKGNSHTRWTKICNVYDTFCKHVGSALAI 174          
BLAST of CB293991 vs. ExPASy Swiss-Prot
Match: U497F_VITVI (UPF0497 membrane protein 15 OS=Vitis vinifera GN=GSVIVT00019814001 PE=2 SV=2)

HSP 1 Score: 159.458 bits (402), Expect = 2.065e-38
Identity = 76/145 (52.41%), Postives = 100/145 (68.97%), Query Frame = -3
Query:  301 YFGIDVGLRVLLFSATLVSVIVMATAKQTELVSPAGIPIRVSVKAKFTDSPAFIYFVAALSVACLYSIITMLASLSVVSKPASAKRLLLYFAFWDVVMLXXXXXXXXXXXXXGYIGLKGNSHSRWTKICNVYDKYCRHIGSATGV 735
            Y  +DV LR+LL  + + SV+VM T+ QT+L++ AG+P+ VS KAKF +SPAFIYFVAALSV  LYSIIT LAS   +SKP+ + + +L+ A WDV+ML              Y+GLKGNSH  W K+CN YDK+CRH+G +  V
Sbjct:   39 YSALDVVLRILLLGSAVASVVVMVTSVQTKLIAVAGVPVLVSNKAKFQNSPAFIYFVAALSVVGLYSIITTLASFIFISKPSCSTKTILHLAIWDVLMLGLAASATGTAGGVAYVGLKGNSHVGWNKVCNTYDKFCRHVGGSIAV 183          
BLAST of CB293991 vs. ExPASy Swiss-Prot
Match: U4972_MUSAC (UPF0497 membrane protein 2 OS=Musa acuminata GN=MA4_106O17.52 PE=3 SV=2)

HSP 1 Score: 144.821 bits (364), Expect = 5.263e-34
Identity = 69/149 (46.31%), Postives = 95/149 (63.76%), Query Frame = -3
Query:  301 NYFGIDVGLRVLLFSATLVSVIVMATAKQTELVS---PAGIPIRVSVKAKFTDSPAFIYFVAALSVACLYSIITMLASLSVVSKPASAKRLLLYFAFWDVVMLXXXXXXXXXXXXXGYIGLKGNSHSRWTKICNVYDKYCRHIGSATGV 738
            N FG+D GLR+LL ++ + +++V+ T+KQTE +    P   P  +S  AKF  SPAFIY + ALSV C YSIITM+AS + ++ P+S+ R+L +    D VM               Y+GLKGNSH  W K+CNVYDK+CRH+GS+  V
Sbjct:   19 NLFGVDFGLRLLLLASAVSALVVLVTSKQTESIPTSLPPPFPAFISRDAKFQHSPAFIYLLVALSVTCFYSIITMVASFAAITSPSSSPRMLFHLVLSDAVMAGVMASAAGTAGSVAYLGLKGNSHVNWNKVCNVYDKFCRHVGSSAAV 167          
BLAST of CB293991 vs. ExPASy Swiss-Prot
Match: U497C_SOYBN (UPF0497 membrane protein 12 OS=Glycine max PE=2 SV=1)

HSP 1 Score: 142.51 bits (358), Expect = 2.612e-33
Identity = 77/147 (52.38%), Postives = 97/147 (65.99%), Query Frame = -3
Query:  301 NYFGIDVGLRVLLFSATLVSVIVMATAKQTELVSPAGIPIRVSVKAKFTDSPAFIYFVAALSVACLYSIITMLASLSVVSKPASAKRLLLYFAFWDVVMLXXXXXXXXXXXXXGYIGLKGNSH-SRWTKICNVYDKYCRHIGSATGV 738
            +YF  DV LR LLF+A+LV+V+V+ TA QTE++    +P  V   AKF  SPAF+YFVAALSV  LYSIIT LASL   +KPA   +LLLYF  WD ++L              Y+GLKGN H   W KIC+VYDK+CRH+G++  V
Sbjct:   25 DYFKFDVILRFLLFAASLVAVVVIVTANQTEVIR---VPQPVPWPAKFRYSPAFVYFVAALSVTGLYSIITTLASLLASNKPALKTKLLLYFILWDALILGIIASATGTAGGVAYLGLKGNRHVVGWNKICHVYDKFCRHVGASIAV 168          
BLAST of CB293991 vs. ExPASy Swiss-Prot
Match: U497D_SOYBN (UPF0497 membrane protein 13 OS=Glycine max PE=2 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 8.403e-32
Identity = 74/147 (50.34%), Postives = 96/147 (65.31%), Query Frame = -3
Query:  301 NYFGIDVGLRVLLFSATLVSVIVMATAKQTELVSPAGIPIRVSVKAKFTDSPAFIYFVAALSVACLYSIITMLASLSVVSKPASAKRLLLYFAFWDVVMLXXXXXXXXXXXXXGYIGLKGNSH-SRWTKICNVYDKYCRHIGSATGV 738
            +YF  DV LR +LF+A+LV+V+V+ T  QTE++    +P  V   AKF  +PAF+YFVAALSV  LYSIIT LASL   +KPA   +LL YF  WD ++L              Y+GLKGNSH   W KIC+VYDK+CRH+G++  V
Sbjct:   25 DYFKFDVILRFVLFAASLVAVVVIVTGNQTEVIL---VPQPVPWPAKFRYTPAFVYFVAALSVTGLYSIITTLASLFASNKPALKTKLLPYFILWDALILGIIASATGTAGGVAYLGLKGNSHVVGWNKICHVYDKFCRHVGASIAV 168          
BLAST of CB293991 vs. ExPASy Swiss-Prot
Match: U497P_ARATH (UPF0497 membrane protein At4g15610 OS=Arabidopsis thaliana GN=At4g15610 PE=2 SV=1)

HSP 1 Score: 131.339 bits (329), Expect = 6.022e-30
Identity = 67/140 (47.86%), Postives = 89/140 (63.57%), Query Frame = -3
Query:  301 VGLRVLLFSATLVSVIVMATAKQTELVSPAGIPIRVSVKAKFTDSPAFIYFVAALSVACLYSIITMLASLSVVSKPASAKRLLLYFAFWDVVMLXXXXXXXXXXXXXGYIGLKGNSHSRWTKICNVYDKYCRHIGSATGV 720
            V LR +LF+ATL S++VM T+KQT+ +   G PIR+   A+FT+SPA IYFV ALSVAC YSI++   ++S   K + +  LLL  A  D VM+              Y+GLKGN   RW KIC++YDK+CRH+G A  V
Sbjct:   31 VVLRFVLFAATLTSIVVMVTSKQTKNIFLPGTPIRIPA-AEFTNSPALIYFVVALSVACFYSIVSTFVTVSAFKKHSCSAVLLLNLAIMDAVMVGIVASATGAGGGVAYLGLKGNKEVRWGKICHIYDKFCRHVGGAIAV 169          
BLAST of CB293991 vs. ExPASy Swiss-Prot
Match: U497F_ARATH (UPF0497 membrane protein At3g06390 OS=Arabidopsis thaliana GN=At3g06390 PE=2 SV=1)

HSP 1 Score: 127.872 bits (320), Expect = 6.658e-29
Identity = 66/139 (47.48%), Postives = 86/139 (61.87%), Query Frame = -3
Query:  310 IDVGLRVLLFSATLVSVIVMATAKQTELVSPAGIPIRVSVKAKFTDSPAFIYFVAALSVACLYSIITMLASLSVVSKPASAKRLLLYFAFWDVVMLXXXXXXXXXXXXXGYIGLKGNSHSRWTKICNVYDKYCRHIGSA 726
            ID+  RVLLFSATL ++IVM T+ QTE+    G+     V A+F DSPAFIYFV AL VA  Y++I+ L S+S++ KP    +  +Y A  D+VML              YI LKGN    W KICNVYDK+CR+I ++
Sbjct:   37 IDIITRVLLFSATLTALIVMVTSDQTEMTQLPGVSSPAPVSAEFNDSPAFIYFVVALVVASFYALISTLVSISLLLKPEFTAQFSIYLASLDMVMLGILASATGTAGGVAYIALKGNEEVGWNKICNVYDKFCRYIATS 175          
BLAST of CB293991 vs. ExPASy Swiss-Prot
Match: U497_IPONI (UPF0497 membrane protein In26 (Fragment) OS=Ipomoea nil GN=IN26 PE=2 SV=2)

HSP 1 Score: 123.635 bits (309), Expect = 1.256e-27
Identity = 70/152 (46.05%), Postives = 94/152 (61.84%), Query Frame = -3
Query:  301 RENYFGIDVGLRVLLFSATLVSVIVMATAKQTELVS---PAGIPIRVSVKAKFTDSPAFIYFVAALSVACLYSIITMLASL-SVVSKPASAKRLLLYFAFWDVVMLXXXXXXXXXXXXXGYIGLKGNSHSRWTKICNVYDKYCRHIGSATGV 744
            +E Y   +  LR+LL ++ +V+V+VM T+K+TEL+S       P  + + AKFT SPAFIYFVA LSVA LY+II+ LAS  +++ KP     L+ +F   DVVML              YIGLKGNSH  WTK+CN Y K C H+G++  V
Sbjct:   19 KEYYKVTEAILRLLLLASLVVAVVVMVTSKETELISVKLDPFPPFMLPLTAKFTQSPAFIYFVAGLSVAGLYTIISTLASFYNLLIKPGFCPALVSHFIILDVVMLGIVGTATGAAGGVAYIGLKGNSHVGWTKVCNKYGKLCTHLGASLAV 170          
BLAST of CB293991 vs. ExPASy Swiss-Prot
Match: U497_PANGI (UPF0497 membrane protein OS=Panax ginseng PE=2 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 1.640e-27
Identity = 63/120 (52.50%), Postives = 79/120 (65.83%), Query Frame = -3
Query:  310 MATAKQTELVSPAGIPIRVSVKAKFTDSPAFIYFVAALSVACLYSIITMLASLSVVSKPASAKRLLLYFAFWDVVMLXXXXXXXXXXXXXGYIGLKGNSHSRWTKICNVYDKYCRHIGSA 669
            M T KQTEL+     P ++   +KFTDSPAFIYFVAA SVA LYSIIT L S   + KP  AK+L+ +F   DV++L             GYIGL+GNSHSRWTKICN+YD +C+H+  +
Sbjct:    1 MVTGKQTELIPIPFPPYQIPYSSKFTDSPAFIYFVAAFSVAGLYSIITSLLSGLALLKPGYAKQLVSHFVVVDVLLLGIVAAAIGAAGGVGYIGLRGNSHSRWTKICNIYDTFCQHLAGS 120          
BLAST of CB293991 vs. ExPASy Swiss-Prot
Match: U4978_ORYSJ (UPF0497 membrane protein Os07g0442900 OS=Oryza sativa subsp. japonica GN=Os07g0442900 PE=2 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 4.771e-27
Identity = 63/144 (43.75%), Postives = 87/144 (60.42%), Query Frame = -3
Query:  307 GIDVGLRVLLFSATLVSVIVMATAKQTELVSPAGIP---IRVSVKAKFTDSPAFIYFVAALSVACLYSIITMLASLSVVSKPASAKRLLLYFAFWDVVMLXXXXXXXXXXXXXGYIGLKGNSHSRWTKICNVYDKYCRHIGSAT 729
            G ++ LR LLF+ +L +++V+ TAKQT +V     P   I   V AK+T SPA IY +AAL   C YS+IT ++S+ ++S  A + + L Y    DV                 ++GLKGNSH+RW KICNVY K+CRHIGS+T
Sbjct:   38 GANLALRALLFAVSLSALVVLVTAKQTVMVPFVIRPPQFILAPVPAKYTHSPALIYLLAALCATCFYSLITAISSVRLLSSSACSAKTLFYLILLDVFYAAVMASATGTAGAVAWVGLKGNSHTRWNKICNVYGKFCRHIGSST 181          
The following BLAST results are available for this feature:
BLAST of CB293991 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 35
Match NameE-valueIdentityDescription
U4974_RICCO2.434e-4760.67UPF0497 membrane protein 4 OS=Ricinus communis GN=... [more]
U497F_VITVI2.065e-3852.41UPF0497 membrane protein 15 OS=Vitis vinifera GN=G... [more]
U4972_MUSAC5.263e-3446.31UPF0497 membrane protein 2 OS=Musa acuminata GN=MA... [more]
U497C_SOYBN2.612e-3352.38UPF0497 membrane protein 12 OS=Glycine max PE=2 SV... [more]
U497D_SOYBN8.403e-3250.34UPF0497 membrane protein 13 OS=Glycine max PE=2 SV... [more]
U497P_ARATH6.022e-3047.86UPF0497 membrane protein At4g15610 OS=Arabidopsis ... [more]
U497F_ARATH6.658e-2947.48UPF0497 membrane protein At3g06390 OS=Arabidopsis ... [more]
U497_IPONI1.256e-2746.05UPF0497 membrane protein In26 (Fragment) OS=Ipomoe... [more]
U497_PANGI1.640e-2752.50UPF0497 membrane protein OS=Panax ginseng PE=2 SV=... [more]
U4978_ORYSJ4.771e-2743.75UPF0497 membrane protein Os07g0442900 OS=Oryza sat... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS01_05ah12_b1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_05ah12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB293991 ID=CB293991; Name=CB293991; organism=Citrus sinensis; type=EST; length=806bp
TTTTTTTTTTTTTTTTTCGTCAAAGCACATCTAATATTAATGGCCCTTTT
GGATCATACTACCTACGTACGTACCATGTATATATCCAAGCTCTCTCTCT
CAGGCATACAATTCATCTACACGTCTGATGATTGAAAATTCGAAAATAAA
TAAAACACTAGAGTACACAATACAGACAATTAACTGTAGAAACAAAGATA
CATAATCTAAATAATGATGTGATCAATCACGAATGCGCAAGTAAAGGGAG
TAAGAGGAGTGCATGGAGAGTAGCACGAGAAGAACAGCGGCGAGGAGTGA
GACCCCGGTGGCGCTGCCTATGTGTCTGCAGTACTTGTCGTAAACGTTGC
ATATCTTTGTCCATCTCGAGTGGCTGTTGCCCTTTAATCCGATATACCCC
ACCCCTCCCGATGCCCCAGTTGCCGATGCTACGATCCCCAACATCACCAC
GTCCCAGAATGCGAAATAGAGCAGCAACCGTTTTGCGGAAGCTGGCTTGG
AGACGACCGAAAGTGATGCAAGCATTGTGATGATACTGTATAGGCAAGCA
ACCGATAGTGCCGCGACAAAATATATGAAAGCCGGGGAATCGGTAAACTT
GGCTTTAACGCTGACTCTAATAGGAATCCCAGCTGGGCTTACGAGCTCAG
TTTGCTTGGCGGTAGCCATGACGATTACAGAAACGAGTGTTGCTGAAAAC
AGCAATACTCTAAGACCCACATCGATGCCAAAATAGTTTTCGCGCACCGC
CCTTTGATCTTCATATTTCGCTGGAGCTTCAGACGCCATGGTATGTGTTC
CTCGTG
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