CB293992

Overview
NameCB293992
Unique NameCB293992
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length750
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CB293992_ssr62 microsatellite CB293992_ssr62:62..87. BLAST: Citrus ESTs to Prunus persica proteins V1
CB293992_ssr35 microsatellite CB293992_ssr35:35..46. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig340 contig Csv1_Contig340:1..750. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CB293992 vs. ExPASy Swiss-Prot
Match: Y2416_ARATH (Uncharacterized protein At2g34160 OS=Arabidopsis thaliana GN=At2g34160 PE=1 SV=1)

HSP 1 Score: 176.407 bits (446), Expect = 1.457e-43
Identity = 91/116 (78.45%), Postives = 103/116 (88.79%), Query Frame = 1 
Query:  148 MEVITEGVNNINISDASAASKKNRIQVSNTKKPLFFYVNLAKRYMQQHNEVELSALGMAIATVVAIAEILKNNGLAVEKKITTSTVDIREETGGRPVQKAKIEVLLGKSEKFDELM 495
            ME IT+GVNN+N+  A+ + KKNRIQVSNTKKPLFFYVNLAKRYMQQ+N+VELSALGMAIATVV + EILKNNG AVEKKI TSTVDI+++  GRPVQKAKIE+ L KSEKFDELM
Sbjct:    1 MEEITDGVNNMNL--ATDSQKKNRIQVSNTKKPLFFYVNLAKRYMQQYNDVELSALGMAIATVVTVTEILKNNGFAVEKKIMTSTVDIKDDARGRPVQKAKIEITLVKSEKFDELM 114
The following BLAST results are available for this feature:
BLAST of CB293992 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
Y2416_ARATH1.457e-4378.45Uncharacterized protein At2g34160 OS=Arabidopsis t... [more]
back to top
Properties
Property NameValue
Genbank descriptionUCRCS01_05ba10_g1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_05ba10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB293992 ID=CB293992; Name=CB293992; organism=Citrus sinensis; type=EST; length=750bp
GGAACTCTAATATAATTTTTTTGTTATCTTGTGCTTCTTTCTTTCTAGAC
GCTTAAAACACAGAGAGAGAGAGAGAGAGAGAGAGAGAATTTTCGAATTA
GGGTTTTTCTCTCTCTAGAAAAGCAGCAGATTCAATAACAAATAGCAATG
GAGGTGATTACAGAGGGAGTGAACAACATAAACATCTCGGACGCATCTGC
AGCCAGCAAGAAGAACCGAATTCAAGTCTCCAATACCAAGAAACCCCTCT
TCTTTTATGTCAATCTCGCCAAGAGGTACATGCAGCAACATAATGAGGTG
GAATTATCTGCTCTTGGAATGGCTATTGCAACTGTTGTCGCTATTGCTGA
GATCTTGAAGAACAATGGACTAGCTGTTGAGAAGAAGATCACGACTTCTA
CTGTTGATATTAGGGAGGAAACAGGGGGACGACCTGTTCAAAAAGCTAAG
ATTGAAGTATTGCTGGGGAAGTCAGAGAAGTTTGATGAGTTGATGGCTGC
TGCGGAGGAGGAGGCAATCAATAATGAGGAGCAGAGCTGAGCTTTTGAGA
GGTTTGCTGGAATTCAGCTTGTTCTTAAGTTAATTGTGGACATCTGTAAT
GGGTTTTTCATAGATGAACTTTCATTTAGTTTACTACTTACTAGTGGTAG
TGATGATAGTTGTTCTAGGGAATTTTTGTAAAATACTGTGCCCGTCATGG
CCTCGTTTCTTAATTCAAATTTGTTCTTAAGTTTAAAAAAAAAAAAAAAA
back to top