CB293996

Overview
NameCB293996
Unique NameCB293996
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length717
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CB293996_ssr43 microsatellite CB293996_ssr43:43..54. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of CB293996 vs. ExPASy Swiss-Prot
Match: SCAM_PEA (Secretory carrier-associated membrane protein OS=Pisum sativum GN=PSAM2 PE=2 SV=1)

HSP 1 Score: 284.263 bits (726), Expect = 4.524e-76
Identity = 141/230 (61.30%), Postives = 157/230 (68.26%), Query Frame = 2
Query:  116 MAGRYDSNPFDEEEVNPFSDPAVRXXXXXXXXXXXXXXXTTNSASVPPATN------------------------------SRKEEAAARAGIVLEEKNWPPFFPIIHHDIANEIPIHLQRLQYVAFATYLGLFLCLLWNIVAVTTAWIKGEGVKIWFLAIIYFIAGVPGAYVLWYRPLYRAFRTESAMKFGWLFLIYLLHIGYCIFASVAPPIIFKGKSLTGALPAVDV 715
            MAGRYD NPFDEE+VNPFS+P                     +    P  +                               RKEEA ARAGIV+EEKNWPPFFPIIHHDI NEIPIHL+ LQYVAF + LGL LCL WN+V+VT AWIKGEGVKIWFLAIIYFIAGVPGAY LWYRPLYRAFRT+SA+KFGW F+ YLLHIG+CI A+VAPPI+FKGKSLTG L A+DV
Sbjct:    1 MAGRYDPNPFDEEQVNPFSNPRSAASATNSRPAPLNPDRADYNYGFGPTVDIPLDTSTDGKKKERDLQAKEAELRKREQEVRRKEEAIARAGIVIEEKNWPPFFPIIHHDITNEIPIHLRTLQYVAFFSLLGLVLCLTWNVVSVTAAWIKGEGVKIWFLAIIYFIAGVPGAYALWYRPLYRAFRTDSAIKFGWFFMFYLLHIGFCILAAVAPPIVFKGKSLTGILSAIDV 230          
BLAST of CB293996 vs. ExPASy Swiss-Prot
Match: SCAM3_ARATH (Secretory carrier-associated membrane protein 3 OS=Arabidopsis thaliana GN=SCAMP3 PE=1 SV=1)

HSP 1 Score: 278.485 bits (711), Expect = 2.482e-74
Identity = 142/253 (56.13%), Postives = 161/253 (63.64%), Query Frame = 2
Query:  116 MAGRYDSNPF-DEEEVNPFSDPAVRXXXXXXXXXXXXXXXTTNSASVPPATNSR----------------------------------------------------KEEAAARAGIVLEEKNWPPFFPIIHHDIANEIPIHLQRLQYVAFATYLGLFLCLLWNIVAVTTAWIKGEGVKIWFLAIIYFIAGVPGAYVLWYRPLYRAFRTESAMKFGWLFLIYLLHIGYCIFASVAPPIIFKGKSLTGALPAVDV 715
            MA RYD NPF +EEEVNPF+                      N+  VPPA+NSR                                                    KE+AAARAGIV+E KNWPPFFP+IHHDIANEIP+HLQRLQYV FATYLGL LCL WNI+AVTTAWIKGEGV IW LA+IYFIAGVPG YVLWYRPLYRAFRT+SA+ FGW FL Y+LHI +C+FA+VAPP++FKGKSL G LPA+DV
Sbjct:    1 MANRYDPNPFAEEEEVNPFA----------------------NARGVPPASNSRLSPLPPEPVGFDYGRTVDIPLDRAGTQDLKKKEKELQAKEAELKRREQDLKRKEDAAARAGIVIEVKNWPPFFPLIHHDIANEIPVHLQRLQYVTFATYLGLVLCLFWNIIAVTTAWIKGEGVTIWLLALIYFIAGVPGGYVLWYRPLYRAFRTDSALSFGWFFLFYMLHIAFCVFAAVAPPVVFKGKSLAGILPAIDV 231          
BLAST of CB293996 vs. ExPASy Swiss-Prot
Match: SCAM1_ARATH (Secretory carrier-associated membrane protein 1 OS=Arabidopsis thaliana GN=SCAMP1 PE=1 SV=1)

HSP 1 Score: 268.085 bits (684), Expect = 3.355e-71
Identity = 130/222 (58.56%), Postives = 153/222 (68.92%), Query Frame = 2
Query:  125 RYDSNPFDEEEVNPFSDPAVRXXXXXXXXXXXXXXXTTNSASVPPATNS-------------------------RKEEAAARAGIVLEEKNWPPFFPIIHHDIANEIPIHLQRLQYVAFATYLGLFLCLLWNIVAVTTAWIKGEGVKIWFLAIIYFIAGVPGAYVLWYRPLYRAFRTESAMKFGWLFLIYLLHIGYCIFASVAPPIIFKGKSLTGALPAVDV 715
            RY S+ FD+ E+NPF++P                     +    P  +                          RKE+A A+AGIV+EEKNWPPFFP+IHHDI+NEIPIHLQR+QYVAF + LGL +CLLWNIVAVTTAWIKGEG  IWFLAIIYFI+GVPGAYV+WYRPLYRA RT+SA+KFGW F  YL HI +C+FA+VAPPIIFKGKSLTG LPA+DV
Sbjct:    3 RYQSHSFDDGEINPFANPTSVPAATSKLSPLPPEPYDRGATMDIPLDSGKDLKAKEKELREKEAELKRREQEIKRKEDAIAQAGIVIEEKNWPPFFPLIHHDISNEIPIHLQRIQYVAFTSMLGLVVCLLWNIVAVTTAWIKGEGPTIWFLAIIYFISGVPGAYVMWYRPLYRAMRTDSALKFGWFFFTYLFHIAFCVFAAVAPPIIFKGKSLTGILPAIDV 224          
BLAST of CB293996 vs. ExPASy Swiss-Prot
Match: SCAM2_ORYSJ (Secretory carrier-associated membrane protein 2 OS=Oryza sativa subsp. japonica GN=SCAMP2 PE=2 SV=1)

HSP 1 Score: 265.003 bits (676), Expect = 2.840e-70
Identity = 133/228 (58.33%), Postives = 156/228 (68.42%), Query Frame = 2
Query:  116 MAGRYDSNPFDEEEVNPFSDPAVRXXXXXXXXXXXXXXXTTNS--ASVPPATNS--------------------------RKEEAAARAGIVLEEKNWPPFFPIIHHDIANEIPIHLQRLQYVAFATYLGLFLCLLWNIVAVTTAWIKGEGVKIWFLAIIYFIAGVPGAYVLWYRPLYRAFRTESAMKFGWLFLIYLLHIGYCIFASVAPPIIFKGKSLTGALPAVDV 715
            MAGRYD NPFDE++VNPF+  +V                  N   A+V    +S                          R+EEAA+RAGIV+EEKNWPPFFPIIHHDI+NEIPIHLQR+QY+AF++ LGL  CL WNI+A T AWIKG GV IW LAIIYFI+GVPGAYVLWYRPLY A RTESA+KFGW FL YL+HI +CI+++VAPP  FKGKSL G LPA+DV
Sbjct:    1 MAGRYDRNPFDEDDVNPFAGGSVPPASNSRMPPLPHEPGFYNDRGATVDIPLDSTKDMKKKEKELQAKEAELNKRESELRRREEAASRAGIVIEEKNWPPFFPIIHHDISNEIPIHLQRMQYLAFSSLLGLAACLFWNIIATTAAWIKGAGVMIWLLAIIYFISGVPGAYVLWYRPLYNAMRTESALKFGWFFLFYLIHILFCIWSAVAPPFPFKGKSLAGILPAIDV 228          
BLAST of CB293996 vs. ExPASy Swiss-Prot
Match: SCAM5_ARATH (Secretory carrier-associated membrane protein 5 OS=Arabidopsis thaliana GN=SCAMP5 PE=2 SV=2)

HSP 1 Score: 260.381 bits (664), Expect = 6.996e-69
Identity = 132/233 (56.65%), Postives = 155/233 (66.52%), Query Frame = 2
Query:  116 MAGRYDSNPFDEE-EVNPFSDPAV-------RXXXXXXXXXXXXXXXTTNSASVPPATNS-------------------------RKEEAAARAGIVLEEKNWPPFFPIIHHDIANEIPIHLQRLQYVAFATYLGLFLCLLWNIVAVTTAWIKGEGVKIWFLAIIYFIAGVPGAYVLWYRPLYRAFRTESAMKFGWLFLIYLLHIGYCIFASVAPPIIFKGKSLTGALPAVDV 715
            M GRYD N FDE+ EVNPF++P         R               T +     P + +                         RK++AAARAGIV+E KNWP FFP+IHHDIANEI + LQRLQY+AFATYLGL L L WNI+AVTTAWIKGEGV IW LA+IYFI+GVPG YVLWYRPLYRAFR++SA  FGW FL Y+LHI +C+FA+VAPPI+FKGKSL G LPA+DV
Sbjct:    1 MGGRYDRNTFDEQDEVNPFANPGSVPAASNSRLSPLPPEPAGFGYGRTVDIPLDRPGSGAQDLKKKEKELQAKEADLRRREQDLKRKQDAAARAGIVIEAKNWPTFFPLIHHDIANEILVRLQRLQYIAFATYLGLVLALFWNIIAVTTAWIKGEGVTIWLLAVIYFISGVPGGYVLWYRPLYRAFRSDSAFNFGWFFLFYMLHILFCLFAAVAPPIVFKGKSLAGILPAIDV 233          
BLAST of CB293996 vs. ExPASy Swiss-Prot
Match: SCAM3_ORYSJ (Secretory carrier-associated membrane protein 3 OS=Oryza sativa subsp. japonica GN=SCAMP3 PE=2 SV=1)

HSP 1 Score: 258.455 bits (659), Expect = 2.658e-68
Identity = 123/224 (54.91%), Postives = 156/224 (69.64%), Query Frame = 2
Query:  116 MAGRYDSNPFDEEEVNPFSDPAVRXXXXXXXXXXXXXXXTTNSASVPPATNS------------------------RKEEAAARAGIVLEEKNWPPFFPIIHHDIANEIPIHLQRLQYVAFATYLGLFLCLLWNIVAVTTAWIKGEGVKIWFLAIIYFIAGVPGAYVLWYRPLYRAFRTESAMKFGWLFLIYLLHIGYCIFASVAPPIIFKGKSLTGALPAVDV 715
            MAG++  N F++++VNPF+  +V                   +  +P  ++                         RKEEAAA+AGIV+E+KNWPPFFP+IHH+I+NEIPIHLQR+QY+AF+++LGL  CL WNI+A TTAW+KGEGV IW LAIIYFI+GVPGAYVLWYRPLY A RTESA+KFGW FL YL+HI +C++A+VAPP  FKGKSL G LPA+DV
Sbjct:    1 MAGKHGRNGFEDDDVNPFAGGSVPPANNSRLPPLSHEPADFYNVDIPLDSSKDLKKKEKELQAMEAELNKRERELKRKEEAAAQAGIVIEDKNWPPFFPLIHHNISNEIPIHLQRMQYLAFSSFLGLAACLFWNIIATTTAWVKGEGVIIWLLAIIYFISGVPGAYVLWYRPLYNAMRTESALKFGWFFLFYLIHIIFCVWAAVAPPFPFKGKSLAGILPAIDV 224          
BLAST of CB293996 vs. ExPASy Swiss-Prot
Match: SCAM4_ORYSJ (Secretory carrier-associated membrane protein 4 OS=Oryza sativa subsp. japonica GN=SCAMP4 PE=2 SV=1)

HSP 1 Score: 253.062 bits (645), Expect = 1.117e-66
Identity = 135/256 (52.73%), Postives = 157/256 (61.33%), Query Frame = 2
Query:  116 MAGR--YDSNPFDE---EEVNPFSDPAVRXXXXXXXXXXXXXXXTTNSA-SVPPATN--------------------------------------------------SRKEEAAARAGIVLEEKNWPPFFPIIHHDIANEIPIHLQRLQYVAFATYLGLFLCLLWNIVAVTTAWIKGEGVKIWFLAIIYFIAGVPGAYVLWYRPLYRAFRTESAMKFGWLFLIYLLHIGYCIFASVAPPIIFKGKSLTGALPAVDV 715
            MAGR  YD NPF+E   +EVNPF+D A +               TT S  S PPAT+                                                   R+EEAAARAGIVLE+KNWPPFFPIIH+DI NEIP+HLQR QYVAFA+ LGL LCL WNI+ VT AWIKGEG KIWFLA+IYFI G PGAY LWYRPLYRA R ESA+KFGW FL YL+HI +C++A+V+P I+F GKSLTG  PA+ +
Sbjct:    1 MAGRSRYD-NPFEEGGGDEVNPFADKASKGGSAGQSSYSGGAFYTTQSRPSAPPATHLSPLPPEPADFYNDFSTPVDIPMDTSKDMKTREKELLAKEAELNRREKEIKRREEAAARAGIVLEDKNWPPFFPIIHNDIGNEIPVHLQRTQYVAFASLLGLVLCLFWNIICVTAAWIKGEGPKIWFLAVIYFILGCPGAYYLWYRPLYRAMRNESALKFGWFFLFYLVHIAFCVYAAVSPSILFVGKSLTGIFPAISL 255          
BLAST of CB293996 vs. ExPASy Swiss-Prot
Match: SCAM1_ORYSJ (Secretory carrier-associated membrane protein 1 OS=Oryza sativa subsp. japonica GN=SCAMP1 PE=2 SV=1)

HSP 1 Score: 253.062 bits (645), Expect = 1.117e-66
Identity = 110/148 (74.32%), Postives = 133/148 (89.86%), Query Frame = 2
Query:  272 RKEEAAARAGIVLEEKNWPPFFPIIHHDIANEIPIHLQRLQYVAFATYLGLFLCLLWNIVAVTTAWIKGEGVKIWFLAIIYFIAGVPGAYVLWYRPLYRAFRTESAMKFGWLFLIYLLHIGYCIFASVAPPIIFKGKSLTGALPAVDV 715
            R+EEAAARAGIV+EEKNWPPF P+IHHDI NEIP HLQR+QYVAFA++LGL  CL WN++AVT+AW+KGEGVKIW LAIIYFI+GVPGAYVLWYRPLY A RT+SA+KFG  FL+YL HI +C+F++VAPP++F+GKSL G LPA+D+
Sbjct:  101 RREEAAARAGIVIEEKNWPPFLPLIHHDITNEIPSHLQRMQYVAFASFLGLACCLFWNVIAVTSAWVKGEGVKIWLLAIIYFISGVPGAYVLWYRPLYNAMRTDSALKFGLFFLVYLFHILFCVFSAVAPPVVFEGKSLAGILPAIDL 248          
BLAST of CB293996 vs. ExPASy Swiss-Prot
Match: SCAM1_ORYSI (Putative secretory carrier-associated membrane protein 1 OS=Oryza sativa subsp. indica GN=SCAMP1 PE=3 SV=1)

HSP 1 Score: 253.062 bits (645), Expect = 1.117e-66
Identity = 110/148 (74.32%), Postives = 133/148 (89.86%), Query Frame = 2
Query:  272 RKEEAAARAGIVLEEKNWPPFFPIIHHDIANEIPIHLQRLQYVAFATYLGLFLCLLWNIVAVTTAWIKGEGVKIWFLAIIYFIAGVPGAYVLWYRPLYRAFRTESAMKFGWLFLIYLLHIGYCIFASVAPPIIFKGKSLTGALPAVDV 715
            R+EEAAARAGIV+EEKNWPPF P+IHHDI NEIP HLQR+QYVAFA++LGL  CL WN++AVT+AW+KGEGVKIW LAIIYFI+GVPGAYVLWYRPLY A RT+SA+KFG  FL+YL HI +C+F++VAPP++F+GKSL G LPA+D+
Sbjct:  101 RREEAAARAGIVIEEKNWPPFLPLIHHDITNEIPSHLQRMQYVAFASFLGLACCLFWNVIAVTSAWVKGEGVKIWLLAIIYFISGVPGAYVLWYRPLYNAMRTDSALKFGLFFLVYLFHILFCVFSAVAPPVVFEGKSLAGILPAIDL 248          
BLAST of CB293996 vs. ExPASy Swiss-Prot
Match: SCAM2_ARATH (Secretory carrier-associated membrane protein 2 OS=Arabidopsis thaliana GN=SCAMP2 PE=2 SV=1)

HSP 1 Score: 245.358 bits (625), Expect = 2.329e-64
Identity = 126/245 (51.43%), Postives = 150/245 (61.22%), Query Frame = 2
Query:  125 RYDSNPFDEEEVNPFSDPAVRXXXXXXXXXXXXXXXTTNSASVPPATNS------------------------------------------------RKEEAAARAGIVLEEKNWPPFFPIIHHDIANEIPIHLQRLQYVAFATYLGLFLCLLWNIVAVTTAWIKGEGVKIWFLAIIYFIAGVPGAYVLWYRPLYRAFRTESAMKFGWLFLIYLLHIGYCIFASVAPPIIFKGKSLTGALPAVDV 715
            R+D NPF +EE+NPF+                      N  SVPPA+NS                                                R+E+A AR G+V+EEKNWP FFP+IHHDI NEIPIHLQ++QYVAF T LGL  CLLWNIVAVT AWIKGEG  IW L+IIYF+AGVPGAYVLWYRPLYRA RT+SA+KFG  F  Y+ HI +C FA+VAPP+IF+GKSLTG LPA+++
Sbjct:    3 RHDPNPFADEEINPFA----------------------NHTSVPPASNSYLKPLPPEPYDRGATVDIPLDSGNDLRAKEMELQAKENELKRKEQELKRREDAIARTGVVIEEKNWPEFFPLIHHDIPNEIPIHLQKIQYVAFTTLLGLVGCLLWNIVAVTVAWIKGEGPTIWLLSIIYFLAGVPGAYVLWYRPLYRATRTDSALKFGAFFFFYVFHIAFCGFAAVAPPVIFQGKSLTGFLPAIEL 225          
The following BLAST results are available for this feature:
BLAST of CB293996 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 14
Match NameE-valueIdentityDescription
SCAM_PEA4.524e-7661.30Secretory carrier-associated membrane protein OS=P... [more]
SCAM3_ARATH2.482e-7456.13Secretory carrier-associated membrane protein 3 OS... [more]
SCAM1_ARATH3.355e-7158.56Secretory carrier-associated membrane protein 1 OS... [more]
SCAM2_ORYSJ2.840e-7058.33Secretory carrier-associated membrane protein 2 OS... [more]
SCAM5_ARATH6.996e-6956.65Secretory carrier-associated membrane protein 5 OS... [more]
SCAM3_ORYSJ2.658e-6854.91Secretory carrier-associated membrane protein 3 OS... [more]
SCAM4_ORYSJ1.117e-6652.73Secretory carrier-associated membrane protein 4 OS... [more]
SCAM1_ORYSJ1.117e-6674.32Secretory carrier-associated membrane protein 1 OS... [more]
SCAM1_ORYSI1.117e-6674.32Putative secretory carrier-associated membrane pro... [more]
SCAM2_ARATH2.329e-6451.43Secretory carrier-associated membrane protein 2 OS... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS01_05cg08_g1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_05cg08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB293996 ID=CB293996; Name=CB293996; organism=Citrus sinensis; type=EST; length=717bp
GCACTATGGCTGACTGAAGACGAGTCCAACGACTTTCATATCCTCTCTCT
CTCTTTAAATCGTTCTCCGATTTCTCTCAAGATTTGGTGAAAAAGTTAAG
TTATAACCGCTTGTGATGGCCGGCCGTTACGACAGCAATCCCTTCGATGA
AGAGGAAGTGAATCCTTTCTCCGACCCAGCTGTTAGGGGGAAAAGCTCGG
GCCAATCGAGGTTTGGTGGAGGTGGATTTTTTACAACAAACAGTGCAAGT
GTTCCACCTGCAACTAATTCAAGGAAAGAAGAAGCTGCAGCACGAGCTGG
AATTGTTCTTGAGGAGAAAAACTGGCCACCATTTTTCCCCATTATTCATC
ATGACATTGCAAACGAAATACCAATTCATCTACAAAGGCTGCAATATGTT
GCATTTGCAACATATTTAGGATTGTTTTTGTGTCTCCTGTGGAACATCGT
AGCTGTTACCACAGCATGGATCAAAGGCGAAGGTGTAAAAATCTGGTTTC
TCGCCATTATTTACTTCATAGCAGGAGTTCCAGGAGCTTATGTGCTGTGG
TATCGACCACTCTATCGTGCTTTCAGGACTGAAAGTGCAATGAAGTTTGG
ATGGCTTTTCTTGATTTACTTGCTCCACATTGGCTATTGCATATTTGCCT
CAGTTGCTCCTCCAATAATTTTCAAAGGAAAGTCACTCACTGGCGCTTTG
CCTGCGGTGGATGTTAT
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