CB294001

Overview
NameCB294001
Unique NameCB294001
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length780
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CB294001_ssr44 microsatellite CB294001_ssr44:44..61. BLAST: Citrus ESTs to Prunus persica proteins V1
CB294001_ssr187 microsatellite CB294001_ssr187:187..201. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of CB294001 vs. ExPASy Swiss-Prot
Match: WIPI3_XENTR (WD repeat domain phosphoinositide-interacting protein 3 OS=Xenopus tropicalis GN=wdr45l PE=2 SV=1)

HSP 1 Score: 142.51 bits (358), Expect = 2.458e-33
Identity = 70/140 (50.00%), Postives = 94/140 (67.14%), Query Frame = 3
Query:  360 LISVSWNQDYGCFAAGTSCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWDDHQSRCIGEFAFRSDVRSVKLSRDRIVVVLEHKIYVYSFV-DLKLLHQIETLANPRGLCCLSHHSS 776
            L+   +NQD+GCFA G   GFR+YN +P KE  +++   GG   VEMLFRCN LALVG G   +YPP KV+IWDD + + + E  F ++V++VKL RDRIVVVL+  I V++F  +   LH  ET  NP+GLC L  +S+
Sbjct:   13 LLYAGFNQDHGCFACGMENGFRVYNTDPLKEKEKQEFLEGGVGYVEMLFRCNYLALVGGGKKPKYPPNKVMIWDDLKKKTVIEIEFSTEVKAVKLRRDRIVVVLDSMIKVFTFTHNPHQLHVFETCYNPKGLCVLCPNSN 152          
BLAST of CB294001 vs. ExPASy Swiss-Prot
Match: WIPI3_CHICK (WD repeat domain phosphoinositide-interacting protein 3 OS=Gallus gallus GN=WDR45L PE=2 SV=1)

HSP 1 Score: 142.51 bits (358), Expect = 2.458e-33
Identity = 70/140 (50.00%), Postives = 94/140 (67.14%), Query Frame = 3
Query:  360 LISVSWNQDYGCFAAGTSCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWDDHQSRCIGEFAFRSDVRSVKLSRDRIVVVLEHKIYVYSFV-DLKLLHQIETLANPRGLCCLSHHSS 776
            L+   +NQD+GCFA G   GFR+YN +P KE  +++   GG   VEMLFRCN LALVG G   +YPP KV+IWDD + + + E  F ++V++VKL RDRIVVVL+  I V++F  +   LH  ET  NP+GLC L  +S+
Sbjct:   13 LLYAGFNQDHGCFACGMENGFRVYNADPLKEKEKQEFPEGGVGHVEMLFRCNYLALVGGGKKPKYPPNKVMIWDDLKKKTVIEIEFSTEVKAVKLRRDRIVVVLDSMIKVFTFTHNPHQLHVFETCYNPKGLCVLCPNSN 152          
BLAST of CB294001 vs. ExPASy Swiss-Prot
Match: WIPI3_XENLA (WD repeat domain phosphoinositide-interacting protein 3 OS=Xenopus laevis GN=wdr45l PE=2 SV=1)

HSP 1 Score: 142.124 bits (357), Expect = 3.211e-33
Identity = 70/140 (50.00%), Postives = 94/140 (67.14%), Query Frame = 3
Query:  360 LISVSWNQDYGCFAAGTSCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWDDHQSRCIGEFAFRSDVRSVKLSRDRIVVVLEHKIYVYSFV-DLKLLHQIETLANPRGLCCLSHHSS 776
            L+   +NQD+GCFA G   GFR+YN +P KE  +++   GG   VEMLFRCN LALVG G   +YPP KV+IWDD + + + E  F ++V++VKL RDRIVVVL+  I V++F  +   LH  ET  NP+GLC L  +S+
Sbjct:   13 LLYSGFNQDHGCFACGMENGFRVYNTDPLKEKEKQEFLEGGVSYVEMLFRCNYLALVGGGKKPKYPPNKVMIWDDLKKKTVIEIEFSTEVKAVKLRRDRIVVVLDSMIKVFTFTHNPHQLHVFETCYNPKGLCVLCPNSN 152          
BLAST of CB294001 vs. ExPASy Swiss-Prot
Match: WIPI3_PONAB (WD repeat domain phosphoinositide-interacting protein 3 OS=Pongo abelii GN=WDR45L PE=2 SV=1)

HSP 1 Score: 141.739 bits (356), Expect = 4.193e-33
Identity = 70/140 (50.00%), Postives = 94/140 (67.14%), Query Frame = 3
Query:  360 LISVSWNQDYGCFAAGTSCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWDDHQSRCIGEFAFRSDVRSVKLSRDRIVVVLEHKIYVYSFV-DLKLLHQIETLANPRGLCCLSHHSS 776
            L+   +NQD+GCFA G   GFR+YN +P KE  +++   GG   VEMLFRCN LALVG G   +YPP KV+IWDD + + + E  F ++V++VKL RDRIVVVL+  I V++F  +   LH  ET  NP+GLC L  +S+
Sbjct:   13 LLYAGFNQDHGCFACGMENGFRVYNTDPLKEKEKQEFLEGGVGHVEMLFRCNYLALVGGGKKPKYPPNKVMIWDDLKKKTVIEIEFSTEVKAVKLRRDRIVVVLDSMIKVFTFTHNPHQLHVFETCYNPKGLCVLCPNSN 152          
BLAST of CB294001 vs. ExPASy Swiss-Prot
Match: WIPI3_MOUSE (WD repeat domain phosphoinositide-interacting protein 3 OS=Mus musculus GN=Wdr45l PE=2 SV=2)

HSP 1 Score: 141.739 bits (356), Expect = 4.193e-33
Identity = 70/140 (50.00%), Postives = 94/140 (67.14%), Query Frame = 3
Query:  360 LISVSWNQDYGCFAAGTSCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWDDHQSRCIGEFAFRSDVRSVKLSRDRIVVVLEHKIYVYSFV-DLKLLHQIETLANPRGLCCLSHHSS 776
            L+   +NQD+GCFA G   GFR+YN +P KE  +++   GG   VEMLFRCN LALVG G   +YPP KV+IWDD + + + E  F ++V++VKL RDRIVVVL+  I V++F  +   LH  ET  NP+GLC L  +S+
Sbjct:   13 LLYAGFNQDHGCFACGMENGFRVYNTDPLKEKEKQEFLEGGVGHVEMLFRCNYLALVGGGKKPKYPPNKVMIWDDLKKKTVIEIEFSTEVKAVKLRRDRIVVVLDSMIKVFTFTHNPHQLHVFETCYNPKGLCVLCPNSN 152          
BLAST of CB294001 vs. ExPASy Swiss-Prot
Match: WIPI3_HUMAN (WD repeat domain phosphoinositide-interacting protein 3 OS=Homo sapiens GN=WDR45L PE=2 SV=2)

HSP 1 Score: 141.739 bits (356), Expect = 4.193e-33
Identity = 70/140 (50.00%), Postives = 94/140 (67.14%), Query Frame = 3
Query:  360 LISVSWNQDYGCFAAGTSCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWDDHQSRCIGEFAFRSDVRSVKLSRDRIVVVLEHKIYVYSFV-DLKLLHQIETLANPRGLCCLSHHSS 776
            L+   +NQD+GCFA G   GFR+YN +P KE  +++   GG   VEMLFRCN LALVG G   +YPP KV+IWDD + + + E  F ++V++VKL RDRIVVVL+  I V++F  +   LH  ET  NP+GLC L  +S+
Sbjct:   13 LLYAGFNQDHGCFACGMENGFRVYNTDPLKEKEKQEFLEGGVGHVEMLFRCNYLALVGGGKKPKYPPNKVMIWDDLKKKTVIEIEFSTEVKAVKLRRDRIVVVLDSMIKVFTFTHNPHQLHVFETCYNPKGLCVLCPNSN 152          
BLAST of CB294001 vs. ExPASy Swiss-Prot
Match: WIPI3_DANRE (WD repeat domain phosphoinositide-interacting protein 3 OS=Danio rerio GN=wdr45l PE=2 SV=1)

HSP 1 Score: 141.354 bits (355), Expect = 5.477e-33
Identity = 70/140 (50.00%), Postives = 93/140 (66.43%), Query Frame = 3
Query:  360 LISVSWNQDYGCFAAGTSCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWDDHQSRCIGEFAFRSDVRSVKLSRDRIVVVLEHKIYVYSFV-DLKLLHQIETLANPRGLCCLSHHSS 776
            L+   +NQD+GCFA G   GFR+YN +P KE  + +   GG   VEMLFRCN LALVG G   +YPP KV+IWDD + + + E  F ++V++VKL RDRIVVVL+  I V++F  +   LH  ET  NP+GLC L  +S+
Sbjct:   13 LLYAGFNQDHGCFACGMENGFRVYNTDPLKEKEKHEFLEGGVGHVEMLFRCNYLALVGGGKKPKYPPNKVMIWDDLKKKTVIEIEFSTEVKAVKLRRDRIVVVLDSMIKVFTFTHNPHQLHVFETCYNPKGLCVLCPNSN 152          
BLAST of CB294001 vs. ExPASy Swiss-Prot
Match: ATG18_YARLI (Autophagy-related protein 18 OS=Yarrowia lipolytica GN=ATG18 PE=3 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 3.802e-26
Identity = 60/136 (44.12%), Postives = 87/136 (63.97%), Query Frame = 3
Query:  369 VSWNQDYGCFAAGTSCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWDDHQSRCIGEFAFRSDVRSVKLSRDRIVVVLEHKIYVYSFVDLKLLHQIETLANPRGLCCLSHHSS 776
            VS+NQDY C + GT  G++IYNC+PF + F +    GG  IVEMLF  +++A+VG GD  Q  P ++ I +  +   I E  F + V  V+L+R R+VV+L+ +IY+Y   ++KL+H IET  NP  +C LS  SS
Sbjct:    8 VSFNQDYSCVSVGTPQGYKIYNCDPFGKCFSK--ADGGMGIVEMLFCTSLIAVVGMGDQPQNSPRRLKIVNTKRQSTICELTFPTAVLGVRLNRQRLVVLLQDQIYIYDISNMKLVHTIETSPNPGAVCALSASSS 141          
BLAST of CB294001 vs. ExPASy Swiss-Prot
Match: ATG18_YEAST (Autophagy-related protein 18 OS=Saccharomyces cerevisiae GN=ATG18 PE=1 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 3.218e-25
Identity = 58/132 (43.94%), Postives = 86/132 (65.15%), Query Frame = 3
Query:  369 VSWNQDYGCFAAGTSCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWDDHQSRCIGEFAFRSDVRSVKLSRDRIVVVLEHKIYVYSFVDLKLLHQIETLANPRGLCCLS 764
            +++NQ   C + GTS GF+I+NCEPF + +  D  SGG+ IVEMLF  ++LALVG GD     P ++ I +  +   I E  F + + SVK+++ R+VV+L+ +IY+Y    ++LLH IET  NPRGL  +S
Sbjct:   11 INFNQTGTCISLGTSKGFKIFNCEPFGKFYSED--SGGYAIVEMLFSTSLLALVGIGDQPALSPRRLRIINTKKHSIICEVTFPTSILSVKMNKSRLVVLLQEQIYIYDINTMRLLHTIETNPNPRGLMAMS 140          
BLAST of CB294001 vs. ExPASy Swiss-Prot
Match: ATG18_YEAS7 (Autophagy-related protein 18 OS=Saccharomyces cerevisiae (strain YJM789) GN=ATG18 PE=3 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 3.218e-25
Identity = 58/132 (43.94%), Postives = 86/132 (65.15%), Query Frame = 3
Query:  369 VSWNQDYGCFAAGTSCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWDDHQSRCIGEFAFRSDVRSVKLSRDRIVVVLEHKIYVYSFVDLKLLHQIETLANPRGLCCLS 764
            +++NQ   C + GTS GF+I+NCEPF + +  D  SGG+ IVEMLF  ++LALVG GD     P ++ I +  +   I E  F + + SVK+++ R+VV+L+ +IY+Y    ++LLH IET  NPRGL  +S
Sbjct:   11 INFNQTGTCISLGTSKGFKIFNCEPFGKFYSED--SGGYAIVEMLFSTSLLALVGIGDQPALSPRRLRIINTKKHSIICEVTFPTSILSVKMNKSRLVVLLQEQIYIYDINTMRLLHTIETNPNPRGLMAMS 140          
The following BLAST results are available for this feature:
BLAST of CB294001 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 56
Match NameE-valueIdentityDescription
WIPI3_XENTR2.458e-3350.00WD repeat domain phosphoinositide-interacting prot... [more]
WIPI3_CHICK2.458e-3350.00WD repeat domain phosphoinositide-interacting prot... [more]
WIPI3_XENLA3.211e-3350.00WD repeat domain phosphoinositide-interacting prot... [more]
WIPI3_PONAB4.193e-3350.00WD repeat domain phosphoinositide-interacting prot... [more]
WIPI3_MOUSE4.193e-3350.00WD repeat domain phosphoinositide-interacting prot... [more]
WIPI3_HUMAN4.193e-3350.00WD repeat domain phosphoinositide-interacting prot... [more]
WIPI3_DANRE5.477e-3350.00WD repeat domain phosphoinositide-interacting prot... [more]
ATG18_YARLI3.802e-2644.12Autophagy-related protein 18 OS=Yarrowia lipolytic... [more]
ATG18_YEAST3.218e-2543.94Autophagy-related protein 18 OS=Saccharomyces cere... [more]
ATG18_YEAS73.218e-2543.94Autophagy-related protein 18 OS=Saccharomyces cere... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS01_05de05_g1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_05de05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB294001 ID=CB294001; Name=CB294001; organism=Citrus sinensis; type=EST; length=780bp
GCCCTTAAGGCTCTGTGAGTCGGGATGAATTGAATCTCTCTCCCTCTCTC
TCTCTCTCTCTTTCAGATCTCTCACAAAGCGAAAGAGAAAATTTGATCTG
ATGATCATTAATTTGATTTCTCATATCACAGCATCAAGGGGGTGCCACTG
AAATTATTCACAATCGAGAAGATTTTCATCTTTGATTGCTGCTGCTGCTG
CTGACCGTTTCTTCGTCCCACATGACTTCAACTGTTTCGACATCTCGAGA
AATTCTTCCACCGGGCCCCTTTGGATCCCCCAATGCTGGCGCTTCGGCTT
CGGCTTCGGCTTCATTTGGCCACCCGCAAACGGCGTTCAGTGATGTTGAT
GAAATTGAGTTGATCTCTGTGTCTTGGAACCAGGACTATGGTTGTTTTGC
CGCTGGAACTAGTTGTGGGTTTCGAATTTATAATTGTGAGCCGTTTAAGG
AAACTTTTAGACGTGATTTGAAAAGTGGTGGGTTTAGGATTGTTGAGATG
TTGTTTCGTTGTAATATATTGGCACTCGTTGGTGCTGGGGATAATTCTCA
GTATCCTCCTACTAAAGTTATTATTTGGGATGATCATCAGAGCAGGTGCA
TTGGTGAGTTTGCGTTTAGGTCTGATGTTCGCTCTGTGAAATTGAGTAGG
GATCGAATTGTGGTTGTTCTTGAGCATAAGATATATGTTTATAGTTTTGT
TGATCTCAAGTTGCTTCATCAGATTGAGACTCTTGCGAATCCGAGGGGGC
TTTGTTGTCTTTCTCATCATTCGAGTACTT
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