CB294003

Overview
NameCB294003
Unique NameCB294003
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length792
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CB294003_ssr85 microsatellite CB294003_ssr85:85..98. BLAST: Citrus ESTs to Prunus persica proteins V1
CB294003_ssr104 microsatellite CB294003_ssr104:104..115. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig9805 contig Csv1_Contig9805:27..818. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB294003 vs. ExPASy Swiss-Prot
Match: PLT1_ARATH (Putative polyol transporter 1 OS=Arabidopsis thaliana GN=PLT1 PE=2 SV=1)

HSP 1 Score: 289.271 bits (739), Expect = 1.671e-77
Identity = 145/211 (68.72%), Postives = 171/211 (81.04%), Query Frame = 2
Query:  158 NNTDPQNQKTLADFDPQKKPKRNLYASGAAILASMTSILLGYDIGVMSGAALYIKDDLKVSDTKIEILMGILNIYSLIGSLAAGRTSDWIGRRYTIVXXXXXXXXXXXXXXXXTNYAFLMGGRFVAGIGVGYALMIAPVYTAELSPASTRGFLTSFPEVFINGGILLGYVSNYGFSKLPLHLGWRMMLGIGAIPSVLLAVGVLAMPESPRW 790
            N++  +    +A+ +P +   R+ YA   AILASMTSI+LGYDIGVMSGA+++IKDDLK+SD ++EILMGILNIYSL+GS AAGRTSDW+GRRYTIV                TNY F+M GRFVAGIGVGYA+MIAPVYTAE++PAS+RGFLTSFPE+FIN GILLGYVSNY FSKLP HLGWR MLG+GA+PSV LA+GVLAMPESPRW
Sbjct:    2 NSSGVEQGVVIAESEPPRG-NRSRYAFACAILASMTSIILGYDIGVMSGASIFIKDDLKLSDVQLEILMGILNIYSLVGSGAAGRTSDWLGRRYTIVLAGAFFFCGALLMGFATNYPFIMVGRFVAGIGVGYAMMIAPVYTAEVAPASSRGFLTSFPEIFINIGILLGYVSNYFFSKLPEHLGWRFMLGVGAVPSVFLAIGVLAMPESPRW 211          
BLAST of CB294003 vs. ExPASy Swiss-Prot
Match: PLT5_ARATH (Polyol transporter 5 OS=Arabidopsis thaliana GN=PLT5 PE=1 SV=2)

HSP 1 Score: 288.115 bits (736), Expect = 3.724e-77
Identity = 146/196 (74.49%), Postives = 159/196 (81.12%), Query Frame = 2
Query:  203 PQKKPKRNLYASGAAILASMTSILLGYDIGVMSGAALYIKDDLKVSDTKIEILMGILNIYSLIGSLAAGRTSDWIGRRYTIVXXXXXXXXXXXXXXXXTNYAFLMGGRFVAGIGVGYALMIAPVYTAELSPASTRGFLTSFPEVFINGGILLGYVSNYGFSKLPLHLGWRMMLGIGAIPSVLLAVGVLAMPESPRW 790
            P K PKRN YA   AILASMTSILLGYDIGVMSGA +YIK DLK++D +I IL G LNIYSLIGS AAGRTSDWIGRRYTIV                 NYAFLM GRF+AGIGVGYALMIAPVYTAE+SPAS+RGFL SFPEVFIN GI+LGYVSN  FS LPL +GWR+MLGIGA+PSV+LA+GVLAMPESPRW
Sbjct:   26 PAKPPKRNNYAFACAILASMTSILLGYDIGVMSGAMIYIKRDLKINDLQIGILAGSLNIYSLIGSCAAGRTSDWIGRRYTIVLAGAIFFAGAILMGLSPNYAFLMFGRFIAGIGVGYALMIAPVYTAEVSPASSRGFLNSFPEVFINAGIMLGYVSNLAFSNLPLKVGWRLMLGIGAVPSVILAIGVLAMPESPRW 221          
BLAST of CB294003 vs. ExPASy Swiss-Prot
Match: PLT2_ARATH (Putative polyol transporter 2 OS=Arabidopsis thaliana GN=PLT2 PE=2 SV=1)

HSP 1 Score: 283.878 bits (725), Expect = 7.022e-76
Identity = 143/201 (71.14%), Postives = 166/201 (82.59%), Query Frame = 2
Query:  188 LADFDPQKKPKRNLYASGAAILASMTSILLGYDIGVMSGAALYIKDDLKVSDTKIEILMGILNIYSLIGSLAAGRTSDWIGRRYTIVXXXXXXXXXXXXXXXXTNYAFLMGGRFVAGIGVGYALMIAPVYTAELSPASTRGFLTSFPEVFINGGILLGYVSNYGFSKLPLHLGWRMMLGIGAIPSVLLAVGVLAMPESPRW 790
            +A+ +P +   R+ +A   AILASMTSI+LGYDIGVMSGAA++IKDDLK+SD ++EILMGILNIYSLIGS AAGRTSDWIGRRYTIV                TNY F+M GRFVAGIGVGYA+MIAPVYT E++PAS+RGFL+SFPE+FIN GILLGYVSNY F+KLP H+GWR MLGIGA+PSV LA+GVLAMPESPRW
Sbjct:   12 VAESEPPRG-NRSRFAFACAILASMTSIILGYDIGVMSGAAIFIKDDLKLSDVQLEILMGILNIYSLIGSGAAGRTSDWIGRRYTIVLAGFFFFCGALLMGFATNYPFIMVGRFVAGIGVGYAMMIAPVYTTEVAPASSRGFLSSFPEIFINIGILLGYVSNYFFAKLPEHIGWRFMLGIGAVPSVFLAIGVLAMPESPRW 211          
BLAST of CB294003 vs. ExPASy Swiss-Prot
Match: PLT3_ARATH (Probable polyol transporter 3 OS=Arabidopsis thaliana GN=PLT3 PE=2 SV=1)

HSP 1 Score: 233.032 bits (593), Expect = 1.422e-60
Identity = 117/192 (60.94%), Postives = 143/192 (74.48%), Query Frame = 2
Query:  215 PKRNLYASGAAILASMTSILLGYDIGVMSGAALYIKDDLKVSDTKIEILMGILNIYSLIGSLAAGRTSDWIGRRYTIVXXXXXXXXXXXXXXXXTNYAFLMGGRFVAGIGVGYALMIAPVYTAELSPASTRGFLTSFPEVFINGGILLGYVSNYGFSKLPLHLGWRMMLGIGAIPSVLLAVGVLAMPESPRW 790
            P  N +A G AI+AS+ SI+ GYD GVMSGA ++I+DDLK++DT+IE+L GILN+ +L+GSL AG+TSD IGRRYTI                  NY  LM GR +AG+GVG+ALMIAPVY+AE+S AS RGFLTS PE+ I+ GILLGYVSNY F KL L LGWR+MLGI A PS++LA G+  MPESPRW
Sbjct:   16 PHMNKFAFGCAIVASIISIIFGYDTGVMSGAQIFIRDDLKINDTQIEVLAGILNLCALVGSLTAGKTSDVIGRRYTIALSAVIFLVGSVLMGYGPNYPVLMVGRCIAGVGVGFALMIAPVYSAEISSASHRGFLTSLPELCISLGILLGYVSNYCFGKLTLKLGWRLMLGIAAFPSLILAFGITRMPESPRW 207          
BLAST of CB294003 vs. ExPASy Swiss-Prot
Match: PLT6_ARATH (Probable polyol transporter 6 OS=Arabidopsis thaliana GN=PLT6 PE=2 SV=2)

HSP 1 Score: 223.016 bits (567), Expect = 1.471e-57
Identity = 113/202 (55.94%), Postives = 146/202 (72.28%), Query Frame = 2
Query:  188 LADFDPQKKPKR-NLYASGAAILASMTSILLGYDIGVMSGAALYIKDDLKVSDTKIEILMGILNIYSLIGSLAAGRTSDWIGRRYTIVXXXXXXXXXXXXXXXXTNYAFLMGGRFVAGIGVGYALMIAPVYTAELSPASTRGFLTSFPEVFINGGILLGYVSNYGFSKLPLHLGWRMMLGIGAIPSVLLAVGVLAMPESPRW 790
            +AD    +KP   N +A   AI+AS+ SI+ GYD GVMSGA ++I++DLK +D +IE+L GILN+ +L+GSL AGRTSD IGRRYTIV                 NY  L+ GR  AG+GVG+ALM+APVY+AE++ AS RG L S P + I+ GILLGY+ NY FSKLP+H+GWR+MLGI A+PS++LA G+L MPESPRW
Sbjct:    1 MADQISGEKPAGVNRFALQCAIVASIVSIIFGYDTGVMSGAMVFIEEDLKTNDVQIEVLTGILNLCALVGSLLAGRTSDIIGRRYTIVLASILFMLGSILMGWGPNYPVLLSGRCTAGLGVGFALMVAPVYSAEIATASHRGLLASLPHLCISIGILLGYIVNYFFSKLPMHIGWRLMLGIAAVPSLVLAFGILKMPESPRW 202          
BLAST of CB294003 vs. ExPASy Swiss-Prot
Match: PLT4_ARATH (Probable polyol transporter 4 OS=Arabidopsis thaliana GN=PLT4 PE=2 SV=1)

HSP 1 Score: 204.912 bits (520), Expect = 4.146e-52
Identity = 103/224 (45.98%), Postives = 143/224 (63.84%), Query Frame = 2
Query:  131 AAGLGTESNN----NTDPQNQKTLADFDPQKKPKRNLYASGAAILASMTSILLGYDIGVMSGAALYIKDDLKVSDTKIEILMGILNIYSLIGSLAAGRTSDWIGRRYTIVXXXXXXXXXXXXXXXXTNYAFLMGGRFVAGIGVGYALMIAPVYTAELSPASTRGFLTSFPEVFINGGILLGYVSNYGFSKLPLHLGWRMMLGIGAIPSVLLAVGVLAMPESPRW 790
            A  +G + N     ++D +  +   + + +    R  Y    A  AS+ ++LLGYD+GVMSGA L+I+ DLK+++ + E+L+G L+I SL GSLA GRTSD IGR++T+                  ++  LM GR +AGIG+G  +MIAPVY AE+SP   RGF TSFPE+FIN GILLGYVSNY FS L +H+ WR+ML +G +PSV +   +  +PESPRW
Sbjct:   18 AVSVGNKKNKYQRMDSDAEESQNHREAEARNSRTRK-YVMACAFFASLNNVLLGYDVGVMSGAVLFIQQDLKITEVQTEVLIGSLSIISLFGSLAGGRTSDSIGRKWTMALAALVFQTGAAVMAVAPSFEVLMIGRTLAGIGIGLGVMIAPVYIAEISPTVARGFFTSFPEIFINLGILLGYVSNYAFSGLSVHISWRIMLAVGILPSVFIGFALCVIPESPRW 240          
BLAST of CB294003 vs. ExPASy Swiss-Prot
Match: INT1_ARATH (Probable inositol transporter 1 OS=Arabidopsis thaliana GN=INT1 PE=2 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 1.874e-28
Identity = 72/192 (37.50%), Postives = 105/192 (54.69%), Query Frame = 2
Query:  224 NLYASGAAILASMTSILLGYDIGVMSGAALYIKDDLKV---SDTKIEILMGILNIYSLIGSLAAGRTSDWIGRRYTIVXXXXXXXXXXXXXXXXTNYAFLMGGRFVAGIGVGYALMIAPVYTAELSPASTRGFLTSFPEVFINGGILLGYVSNYGFSKLPLHLGWRMMLGIGAIPSVLLAVGVLAMPESPRW 790
            N Y  G  + A +  +L GYD GV+SGA LYIKDD +V   S    E ++ +  + ++IG+ A G  +D+ GR+   +                 +   L+ GR + G+GVG A + APVY AE SP+  RG L S   + I GG  L Y+ N  F+++P    WR MLG+  +P+V+  + +L MPESPRW
Sbjct:   28 NSYILGLTVTAGIGGLLFGYDTGVISGALLYIKDDFEVVKQSSFLQETIVSMALVGAMIGAAAGGWINDYYGRKKATLFADVVFAAGAIVMAAAPDPYVLISGRLLVGLGVGVASVTAPVYIAEASPSEVRGGLVSTNVLMITGGQFLSYLVNSAFTQVP--GTWRWMLGVSGVPAVIQFILMLFMPESPRW 217          
BLAST of CB294003 vs. ExPASy Swiss-Prot
Match: YWTG_BACSU (Putative metabolite transport protein ywtG OS=Bacillus subtilis GN=ywtG PE=3 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 1.343e-26
Identity = 65/173 (37.57%), Postives = 100/173 (57.80%), Query Frame = 2
Query:  272 LLGYDIGVMSGAALYIKDDLKVSDTKIEILMGILNIYSLIGSLAAGRTSDWIGRRYTIVXXXXXXXXXXXXXXXXTNYAFLMGGRFVAGIGVGYALMIAPVYTAELSPASTRGFLTSFPEVFINGGILLGYVSNYGFSKLPLHLGWRMMLGIGAIPSVLLAVGVLAMPESPRW 790
            L GYD GV+SGA L++K +L ++     +++  L + +++GS AAG+ +D  GR+  I+                 N   ++  R + G+ VG +  I P+Y +EL+P   RG L+S  ++ I  GILL Y+ NY F+       WR MLG+ A+PS+LL +G+L MPESPRW
Sbjct:   19 LYGYDTGVISGAILFMKKELGLNAFTEGLVVSSLLVGAILGSGAAGKLTDRFGRKKAIMAAALLFCIGGLGVALAPNTGVMVLFRIILGLAVGTSTTIVPLYLSELAPKHKRGALSSLNQLMITVGILLSYIVNYIFADAE---AWRWMLGLAAVPSLLLLIGILFMPESPRW 188          
BLAST of CB294003 vs. ExPASy Swiss-Prot
Match: INT2_ARATH (Probable inositol transporter 2 OS=Arabidopsis thaliana GN=INT2 PE=2 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 1.754e-26
Identity = 72/193 (37.31%), Postives = 100/193 (51.81%), Query Frame = 2
Query:  221 RNLYASGAAILASMTSILLGYDIGVMSGAALYIKDDLKVSDTKI---EILMGILNIYSLIGSLAAGRTSDWIGRRYTIVXXXXXXXXXXXXXXXXTNYAFLMGGRFVAGIGVGYALMIAPVYTAELSPASTRGFLTSFPEVFINGGILLGYVSNYGFSKLPLHLGWRMMLGIGAIPSVLLAVGVLAMPESPRW 790
            +N Y    A  A +  +L GYD GV+SGA LYI+DD K  D      E+++ +    +++G+   G  +D +GRR  I+                 N + L+ GR   G+GVG A M AP+Y +E SPA  RG L S     I GG  L Y+ N  F+ +     WR MLGI  IP++L  V +  +PESPRW
Sbjct:   24 KNPYVLRLAFSAGIGGLLFGYDTGVISGALLYIRDDFKSVDRNTWLQEMIVSMAVAGAIVGAAIGGWANDKLGRRSAILMADFLFLLGAIIMAAAPNPSLLVVGRVFVGLGVGMASMTAPLYISEASPAKIRGALVSTNGFLITGGQFLSYLINLAFTDVT--GTWRWMLGIAGIPALLQFVLMFTLPESPRW 214          
BLAST of CB294003 vs. ExPASy Swiss-Prot
Match: ITR2_SCHPO (Myo-inositol transporter 2 OS=Schizosaccharomyces pombe GN=itr2 PE=2 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 5.103e-26
Identity = 71/217 (32.72%), Postives = 112/217 (51.61%), Query Frame = 2
Query:  149 ESNNNTDPQ-NQKTLADFDPQKKPKRNLYASGAAILASMTSILLGYDIGVMSGAALYIKDDLK--VSDTKIEILMGILNIYSLIGSLAAGRTSDWIGRRYTIVXXXXXXXXXXXXXXXXTNYAFLMGGRFVAGIGVGYALMIAPVYTAELSPASTRGFLTSFPEVFINGGILLGYVSNYGFSKLPLHLGWRMMLGIGAIPSVLLAVGVLAMPESPRW 790
            E  N TDPQ N+    + +  +  K + +    + +A ++ +L GYD GV+SGA   +  DL   +S  + E++    +  +LI +  +G  +DW+GR+  ++                 N A ++ GRF+ G G+G   +I P+Y  EL+PA  RG L     VFI GG L+ Y  N  F    +H GWR+M GIGA P++   + +   PESPR+
Sbjct:   52 EEANATDPQANEVADENGEGFEAEKISSWIWVLSAVAGISGLLFGYDTGVISGALAVLGSDLGHVLSSGQKELITSATSFAALISATTSGWLADWVGRKRLLLCADAIFVIGSVIMAASRNVAMMVVGRFIVGYGIGLTSLIVPMYITELAPARLRGRLVIIYVVFITGGQLIAYSLNAAFEH--VHQGWRIMFGIGAAPALGQLISLFWTPESPRY 266          
The following BLAST results are available for this feature:
BLAST of CB294003 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 130
Match NameE-valueIdentityDescription
PLT1_ARATH1.671e-7768.72Putative polyol transporter 1 OS=Arabidopsis thali... [more]
PLT5_ARATH3.724e-7774.49Polyol transporter 5 OS=Arabidopsis thaliana GN=PL... [more]
PLT2_ARATH7.022e-7671.14Putative polyol transporter 2 OS=Arabidopsis thali... [more]
PLT3_ARATH1.422e-6060.94Probable polyol transporter 3 OS=Arabidopsis thali... [more]
PLT6_ARATH1.471e-5755.94Probable polyol transporter 6 OS=Arabidopsis thali... [more]
PLT4_ARATH4.146e-5245.98Probable polyol transporter 4 OS=Arabidopsis thali... [more]
INT1_ARATH1.874e-2837.50Probable inositol transporter 1 OS=Arabidopsis tha... [more]
YWTG_BACSU1.343e-2637.57Putative metabolite transport protein ywtG OS=Baci... [more]
INT2_ARATH1.754e-2637.31Probable inositol transporter 2 OS=Arabidopsis tha... [more]
ITR2_SCHPO5.103e-2632.72Myo-inositol transporter 2 OS=Schizosaccharomyces ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS01_05dg04_g1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_05dg04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB294003 ID=CB294003; Name=CB294003; organism=Citrus sinensis; type=EST; length=792bp
GTCTTGTTTTTGTAGTAGTTTCATGGCAGCTTGAGTTTCTATCTCTTCTT
CCAAACCCTAGCTTACATAATTAAACACTCGCAGTCTCTCTCTCTCTCGC
TCTCTAGCTAGCTAGCTTAGCAACAACATGGCTGCAGGCTTGGGAACCGA
GAGCAACAACAATACTGACCCTCAAAACCAAAAAACTCTTGCGGATTTTG
ATCCCCAAAAGAAACCAAAAAGAAATCTGTATGCCTCCGGCGCTGCCATT
TTGGCTTCCATGACTTCAATCTTACTAGGTTATGACATTGGAGTAATGAG
TGGAGCTGCACTCTACATCAAAGACGACTTGAAAGTCAGTGACACAAAAA
TCGAGATCTTAATGGGAATCTTGAATATTTACTCACTCATCGGCTCACTG
GCTGCCGGCAGAACCTCCGACTGGATTGGCCGCCGGTACACTATCGTGTT
AGCCGGGGCCATCTTCTTCGCCGGAGCGCTGCTCATGGGGTTCGCCACAA
ACTACGCTTTCCTCATGGGGGGTCGCTTCGTCGCCGGTATCGGCGTCGGA
TACGCTCTCATGATCGCTCCCGTTTACACAGCTGAACTTTCTCCGGCTTC
TACTCGAGGCTTTCTCACCTCATTTCCTGAGGTTTTCATTAACGGCGGGA
TATTACTTGGCTACGTCTCGAACTACGGATTCTCCAAACTACCCCTCCAC
TTAGGCTGGCGCATGATGCTCGGAATCGGCGCCATTCCGTCGGTGCTTCT
CGCCGTCGGCGTGTTAGCCATGCCAGAATCTCCGCGCTGGCT
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