CB294007

Overview
NameCB294007
Unique NameCB294007
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length660
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CB294007_ssr55 microsatellite CB294007_ssr55:55..66. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig5924 contig Csv1_Contig5924:1..651. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB294007 vs. ExPASy Swiss-Prot
Match: UBC13_ARATH (Ubiquitin-conjugating enzyme E2 13 OS=Arabidopsis thaliana GN=UBC13 PE=2 SV=1)

HSP 1 Score: 290.426 bits (742), Expect = 5.470e-78
Identity = 134/151 (88.74%), Postives = 143/151 (94.70%), Query Frame = 1
Query:  121 DLCKNPVAGFSAGLVDETNIFEWSVTIIGPPDTLYEGGFFNAIMSFPSNYPNSPPTVKFTTKIWHPNVYPDGRVCISILHPPGDDPNGYELASERWMPVHTVERIVLSIISMLSSPNDESPANVEAAKEWRDRRDDFKKKVSRCVRRSQEM 573
            DLCK+PV GFSAGLVDE NIFEWSVTIIGPPDTLYEGGFF AIMSFP NYPNSPPTV+FT+ IWHPNVYPDGRVCISILHPPGDDP+GYELASERW PVHTVE I+LSIISMLS PNDESPANVEAAKEWR++RD+FKKKVSRCVR+SQEM
Sbjct:   15 DLCKHPVDGFSAGLVDEKNIFEWSVTIIGPPDTLYEGGFFYAIMSFPQNYPNSPPTVRFTSDIWHPNVYPDGRVCISILHPPGDDPSGYELASERWTPVHTVESIMLSIISMLSGPNDESPANVEAAKEWREKRDEFKKKVSRCVRKSQEM 165          
BLAST of CB294007 vs. ExPASy Swiss-Prot
Match: UBC7_ARATH (Ubiquitin-conjugating enzyme E2 7 OS=Arabidopsis thaliana GN=UBC7 PE=2 SV=1)

HSP 1 Score: 289.656 bits (740), Expect = 9.330e-78
Identity = 133/151 (88.08%), Postives = 143/151 (94.70%), Query Frame = 1
Query:  121 DLCKNPVAGFSAGLVDETNIFEWSVTIIGPPDTLYEGGFFNAIMSFPSNYPNSPPTVKFTTKIWHPNVYPDGRVCISILHPPGDDPNGYELASERWMPVHTVERIVLSIISMLSSPNDESPANVEAAKEWRDRRDDFKKKVSRCVRRSQEM 573
            DLCK+PV GFSAGLVDE NIFEWSVTIIGPPDTLYEGGFFNAIM+FP NYPNSPPTV+FT+ +WHPNVY DGRVCISILHPPGDDP+GYELASERW PVHTVE I+LSIISMLS PNDESPANVEAAKEWRD+RD+FKKKVSRCVR+SQEM
Sbjct:   15 DLCKHPVDGFSAGLVDEKNIFEWSVTIIGPPDTLYEGGFFNAIMTFPQNYPNSPPTVRFTSDMWHPNVYSDGRVCISILHPPGDDPSGYELASERWTPVHTVESIMLSIISMLSGPNDESPANVEAAKEWRDKRDEFKKKVSRCVRKSQEM 165          
BLAST of CB294007 vs. ExPASy Swiss-Prot
Match: UBC14_ARATH (Ubiquitin-conjugating enzyme E2 14 OS=Arabidopsis thaliana GN=UBC14 PE=2 SV=1)

HSP 1 Score: 280.026 bits (715), Expect = 7.393e-75
Identity = 129/152 (84.87%), Postives = 140/152 (92.11%), Query Frame = 1
Query:  121 DLCKNPVAGFSAGLVDETNIFEWSVTIIGPPDTLYEGGFFNAIMSFPSNYPNSPPTVKFTTKIWHPNVYPDGRVCISILHPPGDDPNGYELASERWMPVHTVERIVLSIISMLSSPNDESPANVEAAKEWRDRRDDFKKKVSRCVRRSQEML 576
            DLCK PV GFSAGLVDE N+F+WSV+I+GPPDTLYEGGFFNAIMSFP NYP SPPTV FT+++WHPNVY DG+VCISILHPPGDDP+GYELASERW PVHTVE IVLSIISMLS PNDESPANVEAAKEWRD R +F+KKVSRCVRRSQEML
Sbjct:   16 DLCKKPVDGFSAGLVDEKNVFQWSVSIMGPPDTLYEGGFFNAIMSFPENYPVSPPTVTFTSEMWHPNVYSDGKVCISILHPPGDDPHGYELASERWTPVHTVESIVLSIISMLSGPNDESPANVEAAKEWRDNRAEFRKKVSRCVRRSQEML 167          
BLAST of CB294007 vs. ExPASy Swiss-Prot
Match: UBC7_WHEAT (Ubiquitin-conjugating enzyme E2 7 OS=Triticum aestivum GN=UBC7 PE=2 SV=1)

HSP 1 Score: 261.922 bits (668), Expect = 2.083e-69
Identity = 118/147 (80.27%), Postives = 135/147 (91.84%), Query Frame = 1
Query:  136 PVAGFSAGLVDETNIFEWSVTIIGPPDTLYEGGFFNAIMSFPSNYPNSPPTVKFTTKIWHPNVYPDGRVCISILHPPGDDPNGYELASERWMPVHTVERIVLSIISMLSSPNDESPANVEAAKEWRDRRDDFKKKVSRCVRRSQEML 576
            P  GF  G VD++N+FEW VTIIGPP+TLY+GG+FNAIMSFP NYPNSPPTV+FT+++WHPNVYPDGRVCISI HPPGDDPNGYELASERW PVHTVE IVLSIISMLSSPNDESPAN+EAAK+WR+++D+FKKKV R VR+SQEML
Sbjct:   23 PSMGFQLGFVDDSNVFEWQVTIIGPPETLYDGGYFNAIMSFPQNYPNSPPTVRFTSEMWHPNVYPDGRVCISI-HPPGDDPNGYELASERWTPVHTVESIVLSIISMLSSPNDESPANIEAAKDWREKQDEFKKKVRRAVRKSQEML 168          
BLAST of CB294007 vs. ExPASy Swiss-Prot
Match: UBC15_SCHPO (Ubiquitin-conjugating enzyme E2 15 OS=Schizosaccharomyces pombe GN=ubc15 PE=2 SV=1)

HSP 1 Score: 226.483 bits (576), Expect = 9.700e-59
Identity = 103/152 (67.76%), Postives = 126/152 (82.89%), Query Frame = 1
Query:  121 DLCKNPVAGFSAGLVDETNIFEWSVTIIGPPDTLYEGGFFNAIMSFPSNYPNSPPTVKFTTKIWHPNVYPDGRVCISILHPPGDDPNGYELASERWMPVHTVERIVLSIISMLSSPNDESPANVEAAKEWRDRRDDFKKKVSRCVRRSQEML 576
            ++ KNP  GFS GLVD+ +IFEW V IIGP DTLYEGGFF+A +SFP +YP  PP +KFTT+IWHPNV+P+G VCISILHPPGDD  GYE A ERW+PVH+ E I++S+ISMLSSPNDESPAN++AAKE+R+   +FKK+V R VRRS EM+
Sbjct:   16 EIQKNPPQGFSVGLVDDKSIFEWEVMIIGPEDTLYEGGFFHATLSFPQDYPLMPPKMKFTTEIWHPNVHPNGEVCISILHPPGDDKYGYEDAGERWLPVHSPETILISVISMLSSPNDESPANIDAAKEFRENPQEFKKRVRRLVRRSIEMI 167          
BLAST of CB294007 vs. ExPASy Swiss-Prot
Match: UB2G1_RAT (Ubiquitin-conjugating enzyme E2 G1 OS=Rattus norvegicus GN=Ube2g1 PE=2 SV=3)

HSP 1 Score: 215.698 bits (548), Expect = 1.712e-55
Identity = 97/151 (64.24%), Postives = 122/151 (80.79%), Query Frame = 1
Query:  121 DLCKNPVAGFSAGLVDETNIFEWSVTIIGPPDTLYEGGFFNAIMSFPSNYPNSPPTVKFTTKIWHPNVYPDGRVCISILHPPGDDPNGYELASERWMPVHTVERIVLSIISMLSSPNDESPANVEAAKEWR-DRRDDFKKKVSRCVRRSQE 570
            +L KNPV GFSAGL+D+ +++ W V IIGPPDTLYEGG F A ++FP +YP  PP +KF T+IWHPNV  +G VCISILH PG+D  GYE   ERW+P+HTVE I++S+ISML+ PN +SPANV+AAKEWR DR  +FK+KV+RCVR+SQE
Sbjct:   16 ELNKNPVEGFSAGLIDDNDLYRWEVLIIGPPDTLYEGGVFKAHLTFPKDYPLRPPKMKFITEIWHPNVDKNGDVCISILHEPGEDKYGYEKPEERWLPIHTVETIMISVISMLADPNGDSPANVDAAKEWREDRNGEFKRKVARCVRKSQE 166          
BLAST of CB294007 vs. ExPASy Swiss-Prot
Match: UB2G1_MOUSE (Ubiquitin-conjugating enzyme E2 G1 OS=Mus musculus GN=Ube2g1 PE=2 SV=3)

HSP 1 Score: 215.698 bits (548), Expect = 1.712e-55
Identity = 97/151 (64.24%), Postives = 122/151 (80.79%), Query Frame = 1
Query:  121 DLCKNPVAGFSAGLVDETNIFEWSVTIIGPPDTLYEGGFFNAIMSFPSNYPNSPPTVKFTTKIWHPNVYPDGRVCISILHPPGDDPNGYELASERWMPVHTVERIVLSIISMLSSPNDESPANVEAAKEWR-DRRDDFKKKVSRCVRRSQE 570
            +L KNPV GFSAGL+D+ +++ W V IIGPPDTLYEGG F A ++FP +YP  PP +KF T+IWHPNV  +G VCISILH PG+D  GYE   ERW+P+HTVE I++S+ISML+ PN +SPANV+AAKEWR DR  +FK+KV+RCVR+SQE
Sbjct:   16 ELNKNPVEGFSAGLIDDNDLYRWEVLIIGPPDTLYEGGVFKAHLTFPKDYPLRPPKMKFITEIWHPNVDKNGDVCISILHEPGEDKYGYEKPEERWLPIHTVETIMISVISMLADPNGDSPANVDAAKEWREDRNGEFKRKVARCVRKSQE 166          
BLAST of CB294007 vs. ExPASy Swiss-Prot
Match: UB2G1_HUMAN (Ubiquitin-conjugating enzyme E2 G1 OS=Homo sapiens GN=UBE2G1 PE=1 SV=3)

HSP 1 Score: 215.698 bits (548), Expect = 1.712e-55
Identity = 97/151 (64.24%), Postives = 122/151 (80.79%), Query Frame = 1
Query:  121 DLCKNPVAGFSAGLVDETNIFEWSVTIIGPPDTLYEGGFFNAIMSFPSNYPNSPPTVKFTTKIWHPNVYPDGRVCISILHPPGDDPNGYELASERWMPVHTVERIVLSIISMLSSPNDESPANVEAAKEWR-DRRDDFKKKVSRCVRRSQE 570
            +L KNPV GFSAGL+D+ +++ W V IIGPPDTLYEGG F A ++FP +YP  PP +KF T+IWHPNV  +G VCISILH PG+D  GYE   ERW+P+HTVE I++S+ISML+ PN +SPANV+AAKEWR DR  +FK+KV+RCVR+SQE
Sbjct:   16 ELNKNPVEGFSAGLIDDNDLYRWEVLIIGPPDTLYEGGVFKAHLTFPKDYPLRPPKMKFITEIWHPNVDKNGDVCISILHEPGEDKYGYEKPEERWLPIHTVETIMISVISMLADPNGDSPANVDAAKEWREDRNGEFKRKVARCVRKSQE 166          
BLAST of CB294007 vs. ExPASy Swiss-Prot
Match: UBC7_CAEEL (Probable ubiquitin-conjugating enzyme E2 7 OS=Caenorhabditis elegans GN=ubc-7 PE=1 SV=1)

HSP 1 Score: 213.386 bits (542), Expect = 8.498e-55
Identity = 97/150 (64.67%), Postives = 120/150 (80.00%), Query Frame = 1
Query:  121 DLCKNPVAGFSAGLVDETNIFEWSVTIIGPPDTLYEGGFFNAIMSFPSNYPNSPPTVKFTTKIWHPNVYPDGRVCISILHPPGDDPNGYELASERWMPVHTVERIVLSIISMLSSPNDESPANVEAAKEWRDRRDDFKKKVSRCVRRSQE 570
            D+ + PV GFSAGLVD+ +I++W V +IGPPDTLYEGGFF AI+ FP +YP  PP +KF ++IWHPN+  +G VCISILH PGDD  GYE   ERW+PVHTVE I+LS+ISML+ PN ESPANV+AAK  R+   +FKKKV++CVRRSQE
Sbjct:   14 DMRRVPVDGFSAGLVDDNDIYKWEVLVIGPPDTLYEGGFFKAILDFPRDYPQKPPKMKFISEIWHPNIDKEGNVCISILHDPGDDKWGYERPEERWLPVHTVETILLSVISMLTDPNFESPANVDAAKMQRENYAEFKKKVAQCVRRSQE 163          
BLAST of CB294007 vs. ExPASy Swiss-Prot
Match: UB2G1_MACFA (Ubiquitin-conjugating enzyme E2 G1 OS=Macaca fascicularis GN=UBE2G1 PE=2 SV=1)

HSP 1 Score: 213.001 bits (541), Expect = 1.110e-54
Identity = 96/151 (63.58%), Postives = 121/151 (80.13%), Query Frame = 1
Query:  121 DLCKNPVAGFSAGLVDETNIFEWSVTIIGPPDTLYEGGFFNAIMSFPSNYPNSPPTVKFTTKIWHPNVYPDGRVCISILHPPGDDPNGYELASERWMPVHTVERIVLSIISMLSSPNDESPANVEAAKEWR-DRRDDFKKKVSRCVRRSQE 570
            +L KNPV GFSAGL+D+ +++ W V IIGPPDTLYEGG F A ++FP +YP  PP +KF T+IWHPNV  +G VCISILH PG+D  GYE    RW+P+HTVE I++S+ISML+ PN +SPANV+AAKEWR DR  +FK+KV+RCVR+SQE
Sbjct:   16 ELNKNPVEGFSAGLIDDNDLYRWEVLIIGPPDTLYEGGVFKAHLTFPKDYPLRPPKMKFITEIWHPNVDKNGDVCISILHEPGEDKYGYEKPEGRWLPIHTVETIMISVISMLADPNGDSPANVDAAKEWREDRNGEFKRKVARCVRKSQE 166          
The following BLAST results are available for this feature:
BLAST of CB294007 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 221
Match NameE-valueIdentityDescription
UBC13_ARATH5.470e-7888.74Ubiquitin-conjugating enzyme E2 13 OS=Arabidopsis ... [more]
UBC7_ARATH9.330e-7888.08Ubiquitin-conjugating enzyme E2 7 OS=Arabidopsis t... [more]
UBC14_ARATH7.393e-7584.87Ubiquitin-conjugating enzyme E2 14 OS=Arabidopsis ... [more]
UBC7_WHEAT2.083e-6980.27Ubiquitin-conjugating enzyme E2 7 OS=Triticum aest... [more]
UBC15_SCHPO9.700e-5967.76Ubiquitin-conjugating enzyme E2 15 OS=Schizosaccha... [more]
UB2G1_RAT1.712e-5564.24Ubiquitin-conjugating enzyme E2 G1 OS=Rattus norve... [more]
UB2G1_MOUSE1.712e-5564.24Ubiquitin-conjugating enzyme E2 G1 OS=Mus musculus... [more]
UB2G1_HUMAN1.712e-5564.24Ubiquitin-conjugating enzyme E2 G1 OS=Homo sapiens... [more]
UBC7_CAEEL8.498e-5564.67Probable ubiquitin-conjugating enzyme E2 7 OS=Caen... [more]
UB2G1_MACFA1.110e-5463.58Ubiquitin-conjugating enzyme E2 G1 OS=Macaca fasci... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS01_06ah10_g1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_06ah10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB294007 ID=CB294007; Name=CB294007; organism=Citrus sinensis; type=EST; length=660bp
CGCACTAGGCTCAGTTTCTCTCTCAAATATCTGTAGAGGTAGAGCCAATT
CCAGCTCTCTCTCTCTACTAAAATCATGGCGGCATCTCAGGCAAGTCTCC
TCTTGCAAAAACAACTAAAAGATCTTTGTAAGAACCCTGTTGCTGGGTTT
TCTGCCGGGTTGGTGGATGAGACAAATATCTTTGAATGGAGTGTTACAAT
TATTGGACCACCTGATACTCTTTATGAGGGGGGATTTTTCAATGCCATTA
TGAGCTTTCCATCAAACTACCCTAATAGCCCACCTACAGTGAAGTTTACA
ACAAAGATTTGGCATCCTAATGTCTATCCGGATGGGCGTGTCTGCATATC
AATCCTTCATCCTCCAGGTGACGACCCTAATGGATATGAGCTTGCAAGTG
AGCGCTGGATGCCTGTTCATACTGTTGAAAGGATCGTTTTGAGTATCATA
TCAATGCTTTCCAGTCCTAATGATGAATCTCCTGCAAATGTCGAAGCTGC
AAAAGAATGGAGAGACAGGAGAGATGACTTCAAGAAGAAAGTAAGCCGCT
GTGTGAGAAGATCACAAGAAATGTTGTAAACCAACTGCAAGCACTCTTTT
TTTTCTCTACCTATGTGTTTGTACGGGAAATGTCTTGATTTAATTGTGTG
GGGGGAACTG
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