CB294017

Overview
NameCB294017
Unique NameCB294017
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length807
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CB294017_ssr5 microsatellite CB294017_ssr5:5..16. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig2888 contig Csv1_Contig2888:282..1088. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB294017 vs. ExPASy Swiss-Prot
Match: BH062_ARATH (Transcription factor bHLH62 OS=Arabidopsis thaliana GN=BHLH62 PE=2 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 5.275e-26
Identity = 67/109 (61.47%), Postives = 81/109 (74.31%), Query Frame = 3
Query:  504 NSAQSKDPREVKSKKQKKGNVNDAKK-EEKENS-PKA------DSEKKVAKEPPKDYIHVRARRGQATDSHSLAERVRREKISERMKILQKLVPGCDKVTGKAFMLDEI 806
            +S +    R+ KSK+     V+ +K+ EEKE+S PK       + +K  + +P KDYIHVRARRGQATDSHSLAERVRREKISERMK+LQ LVPGC+KVTGKA MLDEI
Sbjct:  199 SSGELSRKRKTKSKQNSPSAVSSSKEIEEKEDSDPKRCKKSEENGDKTKSIDPYKDYIHVRARRGQATDSHSLAERVRREKISERMKLLQDLVPGCNKVTGKALMLDEI 307          
BLAST of CB294017 vs. ExPASy Swiss-Prot
Match: BPE_ARATH (Transcription factor BPE OS=Arabidopsis thaliana GN=BPE PE=2 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 6.890e-26
Identity = 65/111 (58.56%), Postives = 76/111 (68.47%), Query Frame = 3
Query:  474 KNRTNASSSFNSAQSKDPREVKSKKQKKGNVNDAKKEEKENSPKADSEKKVAKEPPKDYIHVRARRGQATDSHSLAERVRREKISERMKILQKLVPGCDKVTGKAFMLDEI 806
            K R + S S     +    E ++K+QK   V D K E +    + + +KK   EP KDYIHVRARRGQATDSHSLAER RREKISERMKILQ LVPGC+KV GKA +LDEI
Sbjct:   76 KRREDESKSAKIVSTIGASEGENKRQKIDEVCDGKAEAESLGTETE-QKKQQMEPTKDYIHVRARRGQATDSHSLAERARREKISERMKILQDLVPGCNKVIGKALVLDEI 185          
BLAST of CB294017 vs. ExPASy Swiss-Prot
Match: BH137_ARATH (Transcription factor bHLH137 OS=Arabidopsis thaliana GN=BHLH137 PE=2 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 1.535e-25
Identity = 69/116 (59.48%), Postives = 81/116 (69.83%), Query Frame = 3
Query:  474 KNRTNASSSFNSAQSKDPREV----KSKKQKKGNVNDAKKEEKENSPKADSEKKVAKE-PPKDYIHVRARRGQATDSHSLAERVRREKISERMKILQKLVPGCDKVTGKAFMLDEI 806
            K  T  SSS +   S  P  +    K++ +K  N N++K  E     K+  +K+ +KE PP DYIHVRARRGQATDSHSLAERVRREKISERM+ LQ LVPGCDKVTGKA MLDEI
Sbjct:   73 KTATTGSSSCDQL-SHGPSAITNTGKTRGRKARNSNNSK--EGVEGRKSKKQKRGSKEEPPTDYIHVRARRGQATDSHSLAERVRREKISERMRTLQNLVPGCDKVTGKALMLDEI 185          
BLAST of CB294017 vs. ExPASy Swiss-Prot
Match: BH078_ARATH (Transcription factor bHLH78 OS=Arabidopsis thaliana GN=BHLH78 PE=2 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 1.535e-25
Identity = 60/92 (65.22%), Postives = 72/92 (78.26%), Query Frame = 3
Query:  531 EVKSKKQKKGNVNDAKKEEKENSPKADSEKKVAKEPPKDYIHVRARRGQATDSHSLAERVRREKISERMKILQKLVPGCDKVTGKAFMLDEI 806
            E K  K+++   +D ++E +    K+++ K    EPPKDYIHVRARRGQATDSHSLAERVRREKI ERMK+LQ LVPGC+KVTGKA MLDEI
Sbjct:  261 EEKGGKRRREEEDDEEEEGEGEGNKSNNTKP--PEPPKDYIHVRARRGQATDSHSLAERVRREKIGERMKLLQDLVPGCNKVTGKALMLDEI 350          
BLAST of CB294017 vs. ExPASy Swiss-Prot
Match: BH049_ARATH (Transcription factor bHLH49 OS=Arabidopsis thaliana GN=BHLH49 PE=2 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 2.618e-25
Identity = 68/119 (57.14%), Postives = 87/119 (73.11%), Query Frame = 3
Query:  471 RKNRTNASSSFNSAQSKDPREVKSKKQKKGNVNDAKKEEKE-NSP--KADSEKKVAKE---PPKD-YIHVRARRGQATDSHSLAERVRREKISERMKILQKLVPGCDKVTGKAFMLDEI 806
            +K + N   +  +AQS   R  +S+++   N ++ + +E+  NSP  K++S K+  K+   PPKD YIHVRARRGQAT+SHSLAERVRREKISERMK LQ LVPGC+KVTGKA MLDEI
Sbjct:  236 KKRKRNGQKNSEAAQSH--RSQQSEEEPDNNGDEKRNDEQSPNSPGKKSNSGKQQGKQSSDPPKDGYIHVRARRGQATNSHSLAERVRREKISERMKFLQDLVPGCNKVTGKAVMLDEI 352          
BLAST of CB294017 vs. ExPASy Swiss-Prot
Match: BH077_ARATH (Transcription factor bHLH77 OS=Arabidopsis thaliana GN=BHLH77 PE=2 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 7.618e-25
Identity = 66/111 (59.46%), Postives = 74/111 (66.67%), Query Frame = 3
Query:  489 ASSSFNSAQSKDPREVKSKKQKKGNVNDAKKEEKENSPKADSE---KKVAKEP--PKDYIHVRARRGQATDSHSLAERVRREKISERMKILQKLVPGCDKVTGKAFMLDEI 806
            ASSS  ++ SK   E    K  K +  D     K    K DS+   K  AK P  PKDYIHVRARRGQATDSHSLAER RREKISERM +LQ LVPGC+++TGKA MLDEI
Sbjct:  130 ASSSLTASNSKVSGENGGSKGGKRSKQDVAGSSKNGVEKCDSKGDNKDDAKPPEAPKDYIHVRARRGQATDSHSLAERARREKISERMTLLQDLVPGCNRITGKAVMLDEI 240          
BLAST of CB294017 vs. ExPASy Swiss-Prot
Match: BH063_ARATH (Transcription factor bHLH63 OS=Arabidopsis thaliana GN=BHLH63 PE=2 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 2.216e-24
Identity = 65/120 (54.17%), Postives = 78/120 (65.00%), Query Frame = 3
Query:  462 DKKRKNRTNASSSFNSAQSKDPREVKSKKQKKGNVNDAKK----EEKENSPKADSEKKVAKEPPK-DYIHVRARRGQATDSHSLAERVRREKISERMKILQKLVPGCDKVTGKAFMLDEI 806
            +KK+K   N        + +   + K  +Q  G+    KK     +KE +  ++   KV KE  K DYIHVRARRGQATDSHS+AERVRREKISERMK LQ LVPGCDK+TGKA MLDEI
Sbjct:  105 EKKKKMTMNRDDLVEEGEEE---KSKITEQNNGSTKSIKKMKHKAKKEENNFSNDSSKVTKELEKTDYIHVRARRGQATDSHSIAERVRREKISERMKFLQDLVPGCDKITGKAGMLDEI 221          
BLAST of CB294017 vs. ExPASy Swiss-Prot
Match: BH076_ARATH (Transcription factor bHLH76 OS=Arabidopsis thaliana GN=BHLH76 PE=2 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 1.100e-23
Identity = 62/105 (59.05%), Postives = 71/105 (67.62%), Query Frame = 3
Query:  492 SSSFNSAQSKDPREVKSKKQKKGNVNDAKKEEKENSPKADSEKKVAKEPPKDYIHVRARRGQATDSHSLAERVRREKISERMKILQKLVPGCDKVTGKAFMLDEI 806
            SS       KD  E + KKQK       ++    N+ K +SEK+ +      YIH+RARRGQAT+SHSLAERVRREKISERMK LQ LVPGCDKVTGKA MLDEI
Sbjct:  174 SSKKRKRIGKDCEEEEDKKQKD------EQSPTSNANKTNSEKQPSDSLKDGYIHMRARRGQATNSHSLAERVRREKISERMKFLQDLVPGCDKVTGKAVMLDEI 272          
BLAST of CB294017 vs. ExPASy Swiss-Prot
Match: BH079_ARATH (Transcription factor bHLH79 OS=Arabidopsis thaliana GN=BHLH79 PE=2 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 9.312e-23
Identity = 57/111 (51.35%), Postives = 74/111 (66.67%), Query Frame = 3
Query:  486 NASSSFNSAQSKDPREVKSKKQKKGNVNDAKKEEKENSPKAD----SEKKVAKEPPKDYIHVRARRGQATDSHSLAERVRREKISERMKILQKLVPGCDKVTGKAFMLDEI 806
            ++SSS N  +    ++ K    + GN + + + E E S        +E+K   EPPKDYIHVRARRGQATD HSLAER RREKISE+M  LQ ++PGC+K+ GKA +LDEI
Sbjct:   92 SSSSSGNELKESGDKKRKLCGSESGNGDGSMRPEGETSSGGGGSKATEQKNKPEPPKDYIHVRARRGQATDRHSLAERARREKISEKMTALQDIIPGCNKIIGKALVLDEI 202          
BLAST of CB294017 vs. ExPASy Swiss-Prot
Match: BH074_ARATH (Transcription factor bHLH74 OS=Arabidopsis thaliana GN=BHLH74 PE=2 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 9.312e-23
Identity = 58/97 (59.79%), Postives = 73/97 (75.26%), Query Frame = 3
Query:  519 KDPREVKSKKQKKGNVNDAKKEEKENSPKADSEKKVAKEPPKD-YIHVRARRGQATDSHSLAERVRREKISERMKILQKLVPGCDKVTGKAFMLDEI 806
            +DP+    + QKK + ND  KE        + E   ++E PK+ YIH+RARRGQAT+SHSLAERVRREKISERM++LQ+LVPGC+K+TGKA MLDEI
Sbjct:  166 EDPQRGNDQSQKK-HKNDQSKET------VNKESSQSEEAPKENYIHMRARRGQATNSHSLAERVRREKISERMRLLQELVPGCNKITGKAVMLDEI 255          
The following BLAST results are available for this feature:
BLAST of CB294017 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 20
Match NameE-valueIdentityDescription
BH062_ARATH5.275e-2661.47Transcription factor bHLH62 OS=Arabidopsis thalian... [more]
BPE_ARATH6.890e-2658.56Transcription factor BPE OS=Arabidopsis thaliana G... [more]
BH137_ARATH1.535e-2559.48Transcription factor bHLH137 OS=Arabidopsis thalia... [more]
BH078_ARATH1.535e-2565.22Transcription factor bHLH78 OS=Arabidopsis thalian... [more]
BH049_ARATH2.618e-2557.14Transcription factor bHLH49 OS=Arabidopsis thalian... [more]
BH077_ARATH7.618e-2559.46Transcription factor bHLH77 OS=Arabidopsis thalian... [more]
BH063_ARATH2.216e-2454.17Transcription factor bHLH63 OS=Arabidopsis thalian... [more]
BH076_ARATH1.100e-2359.05Transcription factor bHLH76 OS=Arabidopsis thalian... [more]
BH079_ARATH9.312e-2351.35Transcription factor bHLH79 OS=Arabidopsis thalian... [more]
BH074_ARATH9.312e-2359.79Transcription factor bHLH74 OS=Arabidopsis thalian... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS01_06dc08_g1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_06dc08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB294017 ID=CB294017; Name=CB294017; organism=Citrus sinensis; type=EST; length=807bp
GGAGCTCTCTCTCTCTTGCTTAGCTTCTCTTTCCAGTTTCCAGATCACTT
TCTCGAAAACTAGCATTTTCAATTCCAGAGCTTTTCAAAACAAAAAAAAT
AGTGAAAAAAATGGCAGCCTTTTCATACCAACAACACCACCACCCTTTTC
TTTTAGACTCGTCAGAGTTCATTGAGGAAGGCAGTTTTTTCTCTCAACTT
TATTACCCACCAAAATTTCCTACTCATGATGATCATCAAGAGATGATTGT
TGTTAATAATAACAGCAATAATCTTCTTGATGCAGCTGCAGTTTTTGAAA
CTAGCTGTGGTGACAATCATGATCATCACAGTGATGATAATTGTAATGAG
CCTTCTAATAATAATTCTTTAGCCACCAAAAACCAAAGCACTGCAGTGTC
TTCAACTGAGCAGCAGGTCACTCAGAGTACTGTGACGACTACCGCTACTA
CTACTCGTATGGACAAGAAAAGGAAGAACAGAACTAATGCTTCCTCTTCT
TTCAATTCTGCTCAGTCAAAGGATCCAAGAGAAGTGAAAAGCAAGAAGCA
AAAGAAAGGCAATGTTAATGATGCCAAGAAAGAAGAAAAGGAAAATAGTC
CTAAAGCTGATAGTGAGAAGAAAGTTGCTAAAGAACCTCCAAAAGATTAC
ATTCATGTTAGAGCAAGGAGGGGTCAAGCAACTGACAGCCACAGCTTAGC
AGAAAGGGTAAGAAGAGAGAAAATTAGTGAGAGGATGAAAATTTTGCAAA
AGCTTGTTCCTGGCTGTGACAAGGTAACTGGTAAGGCCTTCATGTTGGAT
GAAATTA
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