CB294019

Overview
NameCB294019
Unique NameCB294019
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length767
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CB294019_ssr34 microsatellite CB294019_ssr34:34..45. BLAST: Citrus ESTs to Prunus persica proteins V1
CB294019_ssr78 microsatellite CB294019_ssr78:78..89. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig12845 contig Csv1_Contig12845:56..822. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB294019 vs. ExPASy Swiss-Prot
Match: R3HD1_HUMAN (R3H domain-containing protein 1 OS=Homo sapiens GN=R3HDM1 PE=1 SV=3)

HSP 1 Score: 69.3218 bits (168), Expect = 2.601e-11
Identity = 52/158 (32.91%), Postives = 84/158 (53.16%), Query Frame = 3
Query:  309 FLVEALQN-PRHRLTILRMELDIQRFLQNPDQQHFEFQHFPTSYLRLAAHRVSQHYGLVTMVQENGIEGLGNRILVRKTAESKYPAVRLSEIPAKQSEESDKLEKI-KIAIRRRPNAGCVNGANETGTKRSPVR---SVEDRKEEYDRARARIFSGPS 767
            FLV  L+N PR R+ +L++E +I  F+ N +    +F    TSY R+  HRV+ ++GL     ++ ++  G  ++V KT+ ++ P  + +E       + DK E   K  I +R N+      N+   +    R   S+E+R+EEY RAR RIFS  S
Sbjct:  156 FLVNTLKNNPRDRMMLLKLEQEILDFIGNNESPRKKFPPM-TSYHRMLLHRVAAYFGL-----DHNVDQSGKSVIVNKTSNTRIPDQKFNE-----HIKDDKGEDFQKRYILKRDNSSFDKDDNQMRIRLKDDRRSKSIEEREEEYQRARDRIFSQDS 302          
BLAST of CB294019 vs. ExPASy Swiss-Prot
Match: R3HD2_MOUSE (R3H domain-containing protein 2 OS=Mus musculus GN=R3hdm2 PE=2 SV=2)

HSP 1 Score: 68.9366 bits (167), Expect = 3.397e-11
Identity = 48/156 (30.77%), Postives = 83/156 (53.21%), Query Frame = 3
Query:  309 FLVEALQ-NPRHRLTILRMELDIQRFLQNPDQQHFEFQHFP--TSYLRLAAHRVSQHYGLVTMVQENGIEGLGNRILVRKTAESKYPAVRLSEIPAKQSEESDKLEKIKIAIRRRPNAGCVNGANETGTKRSPVR---SVEDRKEEYDRARARIFS 758
            FLV  L+ NPR R+ +L++E +I  F+ + + Q   F+ FP  TSY R+  HRV+ ++G+     ++ ++  G  +++ KT+ ++ P  R SE      ++    E  +  I +R +A      N+        R   S+E+R+EEY R R RIF+
Sbjct:  157 FLVNTLKKNPRDRMMLLKLEQEILDFINDNNNQ---FKKFPQMTSYHRMLLHRVAAYFGM-----DHNVDQTGKAVIINKTSSTRIPEQRFSE----HIKDEKNTEFQQRFILKRDDASMDRDDNQMRVPLQDGRRSKSIEEREEEYQRVRERIFA 300          
BLAST of CB294019 vs. ExPASy Swiss-Prot
Match: R3HD2_BOVIN (R3H domain-containing protein 2 OS=Bos taurus GN=R3HDM2 PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 3.397e-11
Identity = 48/156 (30.77%), Postives = 83/156 (53.21%), Query Frame = 3
Query:  309 FLVEALQ-NPRHRLTILRMELDIQRFLQNPDQQHFEFQHFP--TSYLRLAAHRVSQHYGLVTMVQENGIEGLGNRILVRKTAESKYPAVRLSEIPAKQSEESDKLEKIKIAIRRRPNAGCVNGANETGTKRSPVR---SVEDRKEEYDRARARIFS 758
            FLV  L+ NPR R+ +L++E +I  F+ + + Q   F+ FP  TSY R+  HRV+ ++G+     ++ ++  G  +++ KT+ ++ P  R SE      ++    E  +  I +R +A      N+        R   S+E+R+EEY R R RIF+
Sbjct:  157 FLVNTLKKNPRDRMMLLKLEQEILDFINDNNNQ---FKKFPQMTSYHRMLLHRVAAYFGM-----DHNVDQTGKAVIINKTSNTRIPEQRFSE----HIKDEKNTEFQQRFILKRDDASMDRDDNQIRVPLQDGRRSKSIEEREEEYQRVRERIFA 300          
BLAST of CB294019 vs. ExPASy Swiss-Prot
Match: ARP21_MOUSE (cAMP-regulated phosphoprotein 21 OS=Mus musculus GN=Arpp21 PE=1 SV=2)

HSP 1 Score: 68.9366 bits (167), Expect = 3.397e-11
Identity = 47/158 (29.75%), Postives = 90/158 (56.96%), Query Frame = 3
Query:  309 FLVEALQN-PRHRLTILRMELDIQRFLQNPDQQHFEFQHFPTSYLRLAAHRVSQHYGLVTMVQENGIEGLGNRILVRKTAESKYPAVRLSE-IPAKQSEESDK---LEKIKIAIRRRPNAGCVNGANETGTKRSPVRSVEDRKEEYDRARARIFSGPS 767
            FL+  L+N  R R+ +L+ME ++  F+ + +  + +F    +SY R+  HRV+ ++GL     ++ ++  G  +++ KT+ ++ P  R  E +  ++SEES K   L++   +I +  N   ++   +   +RS  +S+E+R+EEY R R RIF+  S
Sbjct:  151 FLINTLKNNSRDRMILLKMEQEMIDFIADSNNHYKKFPQM-SSYQRMLVHRVAAYFGL-----DHNVDQTGKSVIINKTSSTRIPEQRFCEHLKDEKSEESQKRFILKRDNSSIDKEDNQNRMHPFRDD--RRS--KSIEEREEEYQRVRERIFAHDS 298          
The following BLAST results are available for this feature:
BLAST of CB294019 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
R3HD1_HUMAN2.601e-1132.91R3H domain-containing protein 1 OS=Homo sapiens GN... [more]
R3HD2_MOUSE3.397e-1130.77R3H domain-containing protein 2 OS=Mus musculus GN... [more]
R3HD2_BOVIN3.397e-1130.77R3H domain-containing protein 2 OS=Bos taurus GN=R... [more]
ARP21_MOUSE3.397e-1129.75cAMP-regulated phosphoprotein 21 OS=Mus musculus G... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS01_06de10_g1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_06de10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB294019 ID=CB294019; Name=CB294019; organism=Citrus sinensis; type=EST; length=767bp
GGGGCCTTTTTCCCCTTTGCCTTTGTCTTCTTGTCTCTCTCTCTCCTTCT
CTCCTGATGCCCACAAGAAAGAAACCCTCTTCTTCTTCTTGATTTCTTCT
ATTTTTCATCCTGTCTGTGAAGCAAACAGAGAGGAAAACAAGAAAGAATT
ATAAGAAGAGGAGATACAACAGAGAGAAAGAGAAAGAAGAATTATAGTTA
AGACTCTTATCAAAGGTCAAAGCCCATCCCCCACCCCCAATGGACTCAGC
ATCGTCAGCCACAGCTGCTGCTGCAATTTTTAATGAGAGAGAGTCAATGG
TGGATCCATTTTTGGTTGAGGCTCTCCAGAATCCTCGTCATCGTCTCACC
ATTCTGCGTATGGAACTTGATATTCAGAGGTTTTTGCAAAATCCTGATCA
GCAGCATTTCGAGTTCCAACATTTTCCTACTTCTTATCTCCGACTGGCTG
CACACCGTGTTTCTCAACATTATGGGCTAGTAACTATGGTTCAGGAAAAT
GGCATAGAAGGGCTGGGTAACAGGATTTTGGTGAGGAAAACAGCAGAAAG
CAAATATCCTGCTGTCCGTTTATCTGAGATTCCTGCTAAGCAGTCGGAAG
AAAGTGATAAGCTTGAAAAGATTAAAATTGCCATCAGGCGTAGGCCCAAT
GCTGGATGTGTTAATGGAGCAAATGAAACTGGGACGAAACGAAGTCCTGT
TAGAAGTGTGGAAGACAGGAAGGAGGAGTATGATCGAGCACGTGCCCGCA
TCTTTAGTGGTCCTAGC
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