CB304408

Overview
NameCB304408
Unique NameCB304408
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length549
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig3781 contig Csv1_Contig3781:1396..1944. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB304408 vs. ExPASy Swiss-Prot
Match: PTR5_ARATH (Peptide transporter PTR5 OS=Arabidopsis thaliana GN=PTR5 PE=2 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 4.334e-18
Identity = 41/104 (39.42%), Postives = 61/104 (58.65%), Query Frame = -3
Query:  236 QLSLIGFSEAFTIIAEVEFYYKQFPENMRSIGGSLTFVGFAISNYLSGFLISMVHRFTKGASTGDWLPEDLNKGRLDYFYYLVAAXXXXXXXXXXLCAKWYKYK 547
            Q  L+G +E FT I ++EF+Y Q P+ MRS+  +L+    A  NYLS FL+++V + T+      W+ ++LN G LDYF++L+A             AKWY YK
Sbjct:  460 QYFLVGCAEVFTFIGQLEFFYDQAPDAMRSLCSALSLTAIAFGNYLSTFLVTLVTKVTRSGGRPGWIAKNLNNGHLDYFFWLLAGLSFLNFLVYLWIAKWYTYK 563          
BLAST of CB304408 vs. ExPASy Swiss-Prot
Match: PTR1_ARATH (Peptide transporter PTR1 OS=Arabidopsis thaliana GN=PTR1 PE=2 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 9.655e-18
Identity = 43/104 (41.35%), Postives = 63/104 (60.58%), Query Frame = -3
Query:  236 QLSLIGFSEAFTIIAEVEFYYKQFPENMRSIGGSLTFVGFAISNYLSGFLISMVHRFTKGASTGDWLPEDLNKGRLDYFYYLVAAXXXXXXXXXXLCAKWYKYK 547
            Q  LIG +E FT I ++EF+Y Q P+ MRS+  +L+    A+ NYLS  L+++V + TK      W+P++LN+G LDYF+YL+A             +K YKYK
Sbjct:  460 QYLLIGCAEVFTFIGQLEFFYDQAPDAMRSLCSALSLTTVALGNYLSTVLVTVVMKITKKNGKPGWIPDNLNRGHLDYFFYLLATLSFLNFLVYLWISKRYKYK 563          
BLAST of CB304408 vs. ExPASy Swiss-Prot
Match: PTR3A_ARATH (Peptide transporter PTR3-A OS=Arabidopsis thaliana GN=PTR3-A PE=2 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 4.959e-14
Identity = 38/104 (36.54%), Postives = 60/104 (57.69%), Query Frame = -3
Query:  236 QLSLIGFSEAFTIIAEVEFYYKQFPENMRSIGGSLTFVGFAISNYLSGFLISMVHRFTKGASTGDWLPEDLNKGRLDYFYYLVAAXXXXXXXXXXLCAKWYKYK 547
            Q  L+G +++F  +A++EF+Y Q PE+M+S+G S +    AI N++S FL+S V   TK    G W+  +LN+ RLDY+Y   A           +  K+Y Y+
Sbjct:  462 QFVLMGMADSFLEVAKLEFFYDQAPESMKSLGTSYSTTSLAIGNFMSSFLLSTVSEITKKRGRG-WILNNLNESRLDYYYLFFAVLNLVNFVLFLVVVKFYVYR 564          
BLAST of CB304408 vs. ExPASy Swiss-Prot
Match: PTR2_ARATH (Peptide transporter PTR2 OS=Arabidopsis thaliana GN=PTR2 PE=1 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 7.160e-13
Identity = 36/104 (34.62%), Postives = 57/104 (54.81%), Query Frame = -3
Query:  236 QLSLIGFSEAFTIIAEVEFYYKQFPENMRSIGGSLTFVGFAISNYLSGFLISMVHRFTKGASTGDWLPEDLNKGRLDYFYYLVAAXXXXXXXXXXLCAKWYKYK 547
            Q  ++G +E F  I ++EF+Y Q P+ MRS+  +L  +  A+ NYLS  ++++V  FT       W+ ++LN G LDYF++L+A             A  YK K
Sbjct:  478 QYFILGAAEVFYFIGQLEFFYDQSPDAMRSLCSALALLTNALGNYLSSLILTLVTYFTTRNGQEGWISDNLNSGHLDYFFWLLAGLSLVNMAVYFFSAARYKQK 581          
BLAST of CB304408 vs. ExPASy Swiss-Prot
Match: PTR3B_ARATH (Peptide transporter PTR3-B OS=Arabidopsis thaliana GN=PTR3-B PE=2 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 1.595e-12
Identity = 38/119 (31.93%), Postives = 64/119 (53.78%), Query Frame = -3
Query:  191 QLSLIGFSEAFTIIAEVEFYYKQFPENMRSIGGSLTFVGFAISNYLSGFLISMVHRFTKGASTGDWLPEDLNKGRLDYFYYLVAAXXXXXXXXXXLCAKWYKYKGSGDGAPEVAMEKLN 547
            Q  L+G ++AF  IA++EF+Y Q PE+M+S+G S T    A+  ++S  L+S V + TK    G W+  +LN+ RLD +Y   A           +  ++Y+Y+     +  V  ++ N
Sbjct:  462 QYVLMGLADAFIEIAKLEFFYDQAPESMKSLGTSYTSTSMAVGYFMSSILLSSVSQITKKQGRG-WIQNNLNESRLDNYYMFFAVLNLLNFILFLVVIRFYEYRADVTQSANVEQKEPN 579          
BLAST of CB304408 vs. ExPASy Swiss-Prot
Match: PTR2X_ARATH (Probable peptide transporter At1g52190 OS=Arabidopsis thaliana GN=At1g52190 PE=1 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 3.929e-11
Identity = 29/84 (34.52%), Postives = 53/84 (63.10%), Query Frame = -3
Query:  296 QLSLIGFSEAFTIIAEVEFYYKQFPENMRSIGGSLTFVGFAISNYLSGFLISMVHRFTKGASTGDWLPEDLNKGRLDYFYYLVA 547
            Q  L G +EA T I + EF+Y +FP++M SI  SL  +G A+++ L+  +++ V+  T       W+ +++NKG  +Y+Y+++A
Sbjct:  466 QYVLHGLAEALTAIGQTEFFYTEFPKSMSSIAASLFGLGMAVASLLASVVLNAVNELTSRNGKESWVSDNINKGHYNYYYWVLA 549          
The following BLAST results are available for this feature:
BLAST of CB304408 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 6
Match NameE-valueIdentityDescription
PTR5_ARATH4.334e-1839.42Peptide transporter PTR5 OS=Arabidopsis thaliana G... [more]
PTR1_ARATH9.655e-1841.35Peptide transporter PTR1 OS=Arabidopsis thaliana G... [more]
PTR3A_ARATH4.959e-1436.54Peptide transporter PTR3-A OS=Arabidopsis thaliana... [more]
PTR2_ARATH7.160e-1334.62Peptide transporter PTR2 OS=Arabidopsis thaliana G... [more]
PTR3B_ARATH1.595e-1231.93Peptide transporter PTR3-B OS=Arabidopsis thaliana... [more]
PTR2X_ARATH3.929e-1134.52Probable peptide transporter At1g52190 OS=Arabidop... [more]
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Properties
Property NameValue
Genbank descriptionFLAVEDO0001_IIIaR_D06 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0001_IIIaR_D06 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB304408 ID=CB304408; Name=CB304408; organism=Citrus sinensis; type=EST; length=549bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCGGGGGCAGCGCAAGCTATT
CATAAAATAAAACCTTGTCTAATACAATAACATTATATAGTTGTTGAAAC
CTAAAATTATATTTGTTATTCTGTTGTATAACTTTTCAGCTTTTATATGA
TATTGCATTATTTTCTATTTCATACTGGAGATTTTTCAGGATTCAGCTTT
TCCATGGCCACTTCCGGGGCGCCGTCACCACTCCCTTTATACTTGTACCA
CTTTGCACACAATAAAAAGAAGCCGAAATTTAAGAGCCCTAATGCAGCAA
CTAAGTAATAGAAGTAATCTAATCTCCCCTTGTTAAGATCTTCGGGCAAC
CAATCTCCAGTGGAAGCACCCTTTGTAAATCTATGAACCATTGATATCAA
GAAACCACTCAAATAATTTGATATTGCAAACCCAACAAACGTCAAAGATC
CGCCAATGCTTCTCATGTTTTCGGGAAACTGCTTGTAGTAGAATTCAACT
TCAGCAATAATTGTAAATGCCTCAGAAAATCCTATCAGTGACAGCTGAG
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