CB304411

Overview
NameCB304411
Unique NameCB304411
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length615
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1618 contig Csv1_Contig1618:331..945. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB304411 vs. ExPASy Swiss-Prot
Match: REMO_SOLTU (Remorin OS=Solanum tuberosum PE=1 SV=1)

HSP 1 Score: 141.354 bits (355), Expect = 3.543e-33
Identity = 74/118 (62.71%), Postives = 85/118 (72.03%), Query Frame = -2
Query:  222 LAEVEKEKRESFIKAWEESXXXXXXXXXXXKLSAVAAWENXXXXXXXXXXXXXEEQLERKKAEYAEKMKNEVALVHKEAEEKRAMVEARRGEDVLKAEEIAAKYRATGTTPKKLLGCF 575
            LA V  EKR S IKAWEES           K+SA+ AWEN             EEQLE+KKAEY EKMKN++AL+HKEAEEKRAM+EA+RGED+LKAEE+AAKYRATGT PKK+LG F
Sbjct:   81 LARVATEKRVSLIKAWEESEKSKAENKAQKKVSAIGAWENSKKANLEAELKKMEEQLEKKKAEYTEKMKNKIALLHKEAEEKRAMIEAKRGEDLLKAEELAAKYRATGTAPKKILGIF 198          
BLAST of CB304411 vs. ExPASy Swiss-Prot
Match: Y3126_ARATH (Uncharacterized protein At3g61260 OS=Arabidopsis thaliana GN=At3g61260 PE=1 SV=1)

HSP 1 Score: 136.346 bits (342), Expect = 1.140e-31
Identity = 71/120 (59.17%), Postives = 84/120 (70.00%), Query Frame = -2
Query:  222 VALAEVEKEKRESFIKAWEESXXXXXXXXXXXKLSAVAAWENXXXXXXXXXXXXXEEQLERKKAEYAEKMKNEVALVHKEAEEKRAMVEARRGEDVLKAEEIAAKYRATGTTPKKLLGCF 581
            V LA++ KEKR SF++AWEES           K++ V AWEN             EEQLE+KKAEYAE+MKN+VA +HKEAEE+RAM+EA+RGEDVLKAEE AAKYRATG  PK   GCF
Sbjct:   93 VKLADLSKEKRLSFVRAWEESEKSKAENKAEKKIADVHAWENSKKAAVEAQLKKIEEQLEKKKAEYAERMKNKVAAIHKEAEERRAMIEAKRGEDVLKAEETAAKYRATGIVPKATCGCF 212          
BLAST of CB304411 vs. ExPASy Swiss-Prot
Match: REMO_ARATH (Remorin OS=Arabidopsis thaliana GN=DBP PE=1 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 7.388e-31
Identity = 73/128 (57.03%), Postives = 88/128 (68.75%), Query Frame = -2
Query:  222 SSRSSDH-VALAEVEKEKRESFIKAWEESXXXXXXXXXXXKLSAVAAWENXXXXXXXXXXXXXEEQLERKKAEYAEKMKNEVALVHKEAEEKRAMVEARRGEDVLKAEEIAAKYRATGTTPKKLLGCF 602
            SS S+D  V LA++EKEK+ SFIKAWEES           K+S V AWEN             EE+LE+KKA+Y EKMKN+VA +HK AEEKRAMVEA++GE++LKAEE+ AKYRATG  PK   GCF
Sbjct:   63 SSGSADRDVILADLEKEKKTSFIKAWEESEKSKAENRAQKKISDVHAWENSKKAAVEAQLRKIEEKLEKKKAQYGEKMKNKVAAIHKLAEEKRAMVEAKKGEELLKAEEMGAKYRATGVVPKATCGCF 190          
The following BLAST results are available for this feature:
BLAST of CB304411 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
REMO_SOLTU3.543e-3362.71Remorin OS=Solanum tuberosum PE=1 SV=1[more]
Y3126_ARATH1.140e-3159.17Uncharacterized protein At3g61260 OS=Arabidopsis t... [more]
REMO_ARATH7.388e-3157.03Remorin OS=Arabidopsis thaliana GN=DBP PE=1 SV=1[more]
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Properties
Property NameValue
Genbank descriptionFLAVEDO0001_IIIaR_D10 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0001_IIIaR_D10 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB304411 ID=CB304411; Name=CB304411; organism=Citrus sinensis; type=EST; length=615bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGGGTCAAACAAATAAAAAGA
CAGATAGGACTTCTATTCCACAACACTTCGATCTTATCATTTGCTTTAGT
TCCATTGAGATTTACACGCAAAACAGCACACCAATGACACAAGAAAGTAT
ACAGATATAAAGTTGGGAGTCATAATCATAAACACAAAAAATATACCACT
TGCAAAAACAATTTGATTTCAGAAGCAACCGAGGAGCTTCTTTGGAGTGG
TCCCAGTAGCCCGATATTTTGCAGCTATCTCCTCAGCCTTAAGAACGTCT
TCTCCCCGTCTAGCTTCAACCATTGCCCTTTTCTCTTCTGCTTCCTTGTG
AACTAGAGCTACCTCATTTTTCATTTTTTCAGCATACTCTGCCTTCTTCC
TCTCCAGTTGTTCCTCAATCTTTTTCAGTTTGGCTTCTAGAGATGCTTTC
TTGCTATTTTCCCATGCAGCAACAGCTGAGAGCTTTTTCTGAGCCTTATT
CTCTGCTTTTGTTTTTTTACTCTCTTCCCATGCCTTGATAAAAGACTCTC
TCTTTTCCTTTTCGACCTCTGCAAGAGCAACATGATCACTACTGCGAGAG
CTTTGGAGCATCACA
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