CB304427

Overview
NameCB304427
Unique NameCB304427
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length449
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig8456 contig Csv1_Contig8456:235..684. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB304427 vs. ExPASy Swiss-Prot
Match: ADF_VITVI (Actin-depolymerizing factor OS=Vitis vinifera PE=2 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 1.702e-25
Identity = 54/60 (90.00%), Postives = 57/60 (95.00%), Query Frame = -3
Query:  268 NCQKSKIFFIAWSPSTSRIRAKMLYATSKDRFRRELDGIHYEIQATDPTEMDLEELRNRA 447
            NCQKSKIFFIAWSP +SRIRAKMLYATSK+RFRRELDG+HYEIQATDPTEMDLE LR RA
Sbjct:   83 NCQKSKIFFIAWSPDSSRIRAKMLYATSKERFRRELDGVHYEIQATDPTEMDLEVLRERA 142          
BLAST of CB304427 vs. ExPASy Swiss-Prot
Match: ADF11_ORYSJ (Actin-depolymerizing factor 11 OS=Oryza sativa subsp. japonica GN=ADF11 PE=2 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 1.440e-24
Identity = 51/60 (85.00%), Postives = 57/60 (95.00%), Query Frame = -3
Query:  268 NCQKSKIFFIAWSPSTSRIRAKMLYATSKDRFRRELDGIHYEIQATDPTEMDLEELRNRA 447
            NCQKSKIFF+AWSPS SRIRAKMLYATSK+RFRRELDG+HYEIQATDP+E+D+E LR RA
Sbjct:   85 NCQKSKIFFVAWSPSVSRIRAKMLYATSKERFRRELDGVHYEIQATDPSELDIELLRERA 144          
BLAST of CB304427 vs. ExPASy Swiss-Prot
Match: ADF2_ORYSJ (Actin-depolymerizing factor 2 OS=Oryza sativa subsp. japonica GN=ADF2 PE=2 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 4.634e-23
Identity = 51/60 (85.00%), Postives = 55/60 (91.67%), Query Frame = -3
Query:  268 NCQKSKIFFIAWSPSTSRIRAKMLYATSKDRFRRELDGIHYEIQATDPTEMDLEELRNRA 447
            N QKSKIFFIAWSPSTSRIRAKMLY+TSKDR ++ELDG HYEIQATDPTE+DLE LR RA
Sbjct:   85 NVQKSKIFFIAWSPSTSRIRAKMLYSTSKDRIKQELDGFHYEIQATDPTEVDLEVLRERA 144          
BLAST of CB304427 vs. ExPASy Swiss-Prot
Match: ADF6_ARATH (Actin-depolymerizing factor 6 OS=Arabidopsis thaliana GN=ADF6 PE=1 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 5.123e-22
Identity = 49/61 (80.33%), Postives = 54/61 (88.52%), Query Frame = -3
Query:  265 NCQKSKIFFIAWSPSTSRIRAKMLYATSKDRFRRELDGIHYEIQATDPTEMDLEELRNRAS 447
            NCQKSKIFF AWSPSTS IRAK+LY+TSKD+  REL GIHYEIQATDPTE+DLE LR RA+
Sbjct:   86 NCQKSKIFFFAWSPSTSGIRAKVLYSTSKDQLSRELQGIHYEIQATDPTEVDLEVLRERAN 146          
BLAST of CB304427 vs. ExPASy Swiss-Prot
Match: ADF7_ORYSJ (Actin-depolymerizing factor 7 OS=Oryza sativa subsp. japonica GN=ADF7 PE=3 SV=2)

HSP 1 Score: 100.523 bits (249), Expect = 3.321e-21
Identity = 45/61 (73.77%), Postives = 55/61 (90.16%), Query Frame = -3
Query:  265 NCQKSKIFFIAWSPSTSRIRAKMLYATSKDRFRRELDGIHYEIQATDPTEMDLEELRNRAS 447
            NCQKSKIFFIAWSP TSR+R+KM+YA+SKDRF+RELDGI  E+QATDPTE+ L+ +R RA+
Sbjct:   79 NCQKSKIFFIAWSPDTSRVRSKMIYASSKDRFKRELDGIQVELQATDPTEVGLDVIRGRAN 139          
BLAST of CB304427 vs. ExPASy Swiss-Prot
Match: ADF10_ORYSJ (Actin-depolymerizing factor 10 OS=Oryza sativa subsp. japonica GN=ADF10 PE=2 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 1.262e-20
Identity = 44/61 (72.13%), Postives = 54/61 (88.52%), Query Frame = -3
Query:  265 NCQKSKIFFIAWSPSTSRIRAKMLYATSKDRFRRELDGIHYEIQATDPTEMDLEELRNRAS 447
            NC+KSKIFFI+WSPS SRIRAK +YA S+++FR ELDG+H+EIQATDP +MDLE LR RA+
Sbjct:   89 NCRKSKIFFISWSPSVSRIRAKTIYAVSRNQFRHELDGVHFEIQATDPDDMDLEVLRGRAN 149          
BLAST of CB304427 vs. ExPASy Swiss-Prot
Match: ADF10_ARATH (Actin-depolymerizing factor 10 OS=Arabidopsis thaliana GN=ADF10 PE=2 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 1.262e-20
Identity = 44/61 (72.13%), Postives = 54/61 (88.52%), Query Frame = -3
Query:  265 NCQKSKIFFIAWSPSTSRIRAKMLYATSKDRFRRELDGIHYEIQATDPTEMDLEELRNRAS 447
            NCQKSKIFFIAWSP TSR+R+KMLYA+SKDRF+RELDGI  E+QATDP+EM L+ ++ R +
Sbjct:   79 NCQKSKIFFIAWSPDTSRVRSKMLYASSKDRFKRELDGIQVELQATDPSEMSLDIIKGRVN 139          
BLAST of CB304427 vs. ExPASy Swiss-Prot
Match: ADF1_ARATH (Actin-depolymerizing factor 1 OS=Arabidopsis thaliana GN=ADF1 PE=1 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 2.152e-20
Identity = 43/61 (70.49%), Postives = 54/61 (88.52%), Query Frame = -3
Query:  265 NCQKSKIFFIAWSPSTSRIRAKMLYATSKDRFRRELDGIHYEIQATDPTEMDLEELRNRAS 447
            NCQKSKIFFIAW P  +++R+KM+YA+SKDRF+RELDGI  E+QATDPTEMDL+  R+RA+
Sbjct:   79 NCQKSKIFFIAWCPDIAKVRSKMIYASSKDRFKRELDGIQVELQATDPTEMDLDVFRSRAN 139          
BLAST of CB304427 vs. ExPASy Swiss-Prot
Match: ADF4_ARATH (Actin-depolymerizing factor 4 OS=Arabidopsis thaliana GN=ADF4 PE=2 SV=2)

HSP 1 Score: 97.0561 bits (240), Expect = 3.671e-20
Identity = 42/61 (68.85%), Postives = 54/61 (88.52%), Query Frame = -3
Query:  265 NCQKSKIFFIAWSPSTSRIRAKMLYATSKDRFRRELDGIHYEIQATDPTEMDLEELRNRAS 447
            NCQKSKIFFIAW P  +++R+KM+YA+SKDRF+RELDGI  E+QATDPTEMDL+ L++R +
Sbjct:   79 NCQKSKIFFIAWCPDVAKVRSKMIYASSKDRFKRELDGIQVELQATDPTEMDLDVLKSRVN 139          
BLAST of CB304427 vs. ExPASy Swiss-Prot
Match: ADF1_ORYSJ (Actin-depolymerizing factor 1 OS=Oryza sativa subsp. japonica GN=ADF1 PE=2 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 4.795e-20
Identity = 42/60 (70.00%), Postives = 55/60 (91.67%), Query Frame = -3
Query:  268 NCQKSKIFFIAWSPSTSRIRAKMLYATSKDRFRRELDGIHYEIQATDPTEMDLEELRNRA 447
            NCQKSKIFFI+W+P TSR+R+KMLYA+SKDRF+RELDGI  E+QATDP+EM ++ +++RA
Sbjct:   79 NCQKSKIFFISWAPDTSRVRSKMLYASSKDRFKRELDGIQVELQATDPSEMSMDIVKSRA 138          
The following BLAST results are available for this feature:
BLAST of CB304427 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 31
Match NameE-valueIdentityDescription
ADF_VITVI1.702e-2590.00Actin-depolymerizing factor OS=Vitis vinifera PE=2... [more]
ADF11_ORYSJ1.440e-2485.00Actin-depolymerizing factor 11 OS=Oryza sativa sub... [more]
ADF2_ORYSJ4.634e-2385.00Actin-depolymerizing factor 2 OS=Oryza sativa subs... [more]
ADF6_ARATH5.123e-2280.33Actin-depolymerizing factor 6 OS=Arabidopsis thali... [more]
ADF7_ORYSJ3.321e-2173.77Actin-depolymerizing factor 7 OS=Oryza sativa subs... [more]
ADF10_ORYSJ1.262e-2072.13Actin-depolymerizing factor 10 OS=Oryza sativa sub... [more]
ADF10_ARATH1.262e-2072.13Actin-depolymerizing factor 10 OS=Arabidopsis thal... [more]
ADF1_ARATH2.152e-2070.49Actin-depolymerizing factor 1 OS=Arabidopsis thali... [more]
ADF4_ARATH3.671e-2068.85Actin-depolymerizing factor 4 OS=Arabidopsis thali... [more]
ADF1_ORYSJ4.795e-2070.00Actin-depolymerizing factor 1 OS=Oryza sativa subs... [more]

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Properties
Property NameValue
Genbank descriptionFLAVEDO0001_IIIaR_F08 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0001_IIIaR_F08 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB304427 ID=CB304427; Name=CB304427; organism=Citrus sinensis; type=EST; length=449bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTGGAATACCCAACAAACAAACT
TATATTCATCAGAGTAGCAATAAACCACTGGGAAGCTAAATTCACCACAA
CAAGATAACCTCAGCCCAATCAGTCTTCCCACATTGCCAGTTATTCGAAG
ATTACGCATAGATTTTTGCACATAGATTAATGAAGCAAGGAGCAACAGTT
GGCAGAACCCCTTGCTGATTTTTTTTTCATGGAAGGAAGAAACTGCAAAA
CTGCAGACTCTTCAGCTTGCACGGTTTCTAAGCTCTTCAAGATCCATCTC
TGTAGGATCAGTAGCCTGAATCTCATAGTGGATACCATCCAGCTCCCGTC
GAAATCTGTCTTTAGATGTGGCGTACAGCATCTTGGCACGGATTCTAGAG
GTTGAAGGGGACCATGCAATGAAGAATATCTTGCTCTTCTGACAATTCT
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