CB304428

Overview
NameCB304428
Unique NameCB304428
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length665
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2668 contig Csv1_Contig2668:153..817. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB304428 vs. ExPASy Swiss-Prot
Match: NLTP_HELAN (Non-specific lipid-transfer protein OS=Helianthus annuus PE=3 SV=1)

HSP 1 Score: 155.992 bits (393), Expect = 1.625e-37
Identity = 71/113 (62.83%), Postives = 90/113 (79.65%), Query Frame = -1
Query:  252 ALKLVCASLLCILVTAPVTNAITCGQVTGSLAPCIAFLRTGGRFPPPPCCNGVRSLNGAARTTPDRQAACNCLKQAYRSIPGINANVAAGLPRQCGVSIPYKISPNTDCSRVR 590
            A+ ++CA + C++V AP T A++CGQV+ SLAPCI++L  GG  PP  CC+GV+SLN AA+TTPDRQAAC CLK AY SI G+NA  AA  P +CGVSIPYKISP+TDCS+V+
Sbjct:    5 AMMVLCAGVTCMVVGAPYTEALSCGQVSSSLAPCISYLTKGGAVPPA-CCSGVKSLNSAAKTTPDRQAACGCLKSAYNSISGVNAGNAASFPGKCGVSIPYKISPSTDCSKVQ 116          
BLAST of CB304428 vs. ExPASy Swiss-Prot
Match: NLTP1_PRUDU (Non-specific lipid-transfer protein 1 OS=Prunus dulcis PE=3 SV=1)

HSP 1 Score: 149.443 bits (376), Expect = 1.521e-35
Identity = 67/114 (58.77%), Postives = 87/114 (76.32%), Query Frame = -1
Query:  252 AALKLVCASLLCILVTAPVTNAITCGQVTGSLAPCIAFLRTGGRFPPPPCCNGVRSLNGAARTTPDRQAACNCLKQAYRSIPGINANVAAGLPRQCGVSIPYKISPNTDCSRVR 593
            A  KL     LC++V+ P+  AITCGQV+ +LAPCI ++R GG  PP  CCNG+R++N  ARTTPDRQAACNCLKQ   S+PG+N N AA LP +CGV+IPY+ISP+T+C+ V+
Sbjct:    5 AMTKLALVVALCMVVSVPIAQAITCGQVSSNLAPCIPYVRGGGAVPPA-CCNGIRNVNNLARTTPDRQAACNCLKQLSASVPGVNPNNAAALPGKCGVNIPYQISPSTNCANVK 117          
BLAST of CB304428 vs. ExPASy Swiss-Prot
Match: NLTP_PRUAV (Non-specific lipid-transfer protein OS=Prunus avium PE=1 SV=1)

HSP 1 Score: 147.902 bits (372), Expect = 4.426e-35
Identity = 65/114 (57.02%), Postives = 87/114 (76.32%), Query Frame = -1
Query:  252 AALKLVCASLLCILVTAPVTNAITCGQVTGSLAPCIAFLRTGGRFPPPPCCNGVRSLNGAARTTPDRQAACNCLKQAYRSIPGINANVAAGLPRQCGVSIPYKISPNTDCSRVR 593
            A  KL     LC++V+ P+  A+TCGQV+ +LAPCIA++R GG  PP  CCNG+R++N  A+TT DRQ ACNCLKQ   S+PG+NAN AA LP +CGV++PYKISP+T+C+ V+
Sbjct:    5 AMTKLALVVALCMVVSVPIAQALTCGQVSSNLAPCIAYVRGGGAVPPA-CCNGIRNINNLAKTTADRQTACNCLKQLSASVPGVNANNAAALPGKCGVNVPYKISPSTNCATVK 117          
BLAST of CB304428 vs. ExPASy Swiss-Prot
Match: NLTP_MALDO (Non-specific lipid-transfer protein OS=Malus domestica GN=MALD3 PE=1 SV=1)

HSP 1 Score: 139.428 bits (350), Expect = 1.574e-32
Identity = 67/114 (58.77%), Postives = 84/114 (73.68%), Query Frame = -1
Query:  252 AALKLVCASLLCILVTAPVTNAITCGQVTGSLAPCIAFLRTGGRFPPPPCCNGVRSLNGAARTTPDRQAACNCLKQAYRSIPGINANVAAGLPRQCGVSIPYKISPNTDCSRVR 593
            A  KL     LC+ V+  V +AITCGQVT SLAPCI ++R+GG  PP  CCNG+R++NG ARTT DRQ ACNCLK    SI G+N N AAGLP +CGV++PYKIS +T+C+ V+
Sbjct:    5 AVTKLALVVALCMAVS--VAHAITCGQVTSSLAPCIGYVRSGGAVPPA-CCNGIRTINGLARTTADRQTACNCLKNLAGSISGVNPNNAAGLPGKCGVNVPYKISTSTNCATVK 115          
BLAST of CB304428 vs. ExPASy Swiss-Prot
Match: LTP1_MORNI (Non-specific lipid-transfer protein 1 OS=Morus nigra PE=1 SV=1)

HSP 1 Score: 139.428 bits (350), Expect = 1.574e-32
Identity = 65/92 (70.65%), Postives = 75/92 (81.52%), Query Frame = -1
Query:  252 ITCGQVTGSLAPCIAFLRTGGRFPPPPCCNGVRSLNGAARTTPDRQAACNCLKQAYRSIPGINANVAAGLPRQCGVSIPYKISPNTDCSRVR 527
            ITCGQV+ SLAPCI +LR GG   P  CCNGVRSLN AA+TT DRQAACNCLK A+ SI G+N N+AAGLP +CGVS+PYKISP+TDC  V+
Sbjct:    1 ITCGQVSSSLAPCINYLRAGG-VVPANCCNGVRSLNNAAKTTADRQAACNCLKSAFNSIKGLNLNLAAGLPGKCGVSVPYKISPSTDCKSVK 91          
BLAST of CB304428 vs. ExPASy Swiss-Prot
Match: NLTP2_GOSHI (Non-specific lipid-transfer protein OS=Gossypium hirsutum PE=2 SV=1)

HSP 1 Score: 138.272 bits (347), Expect = 3.507e-32
Identity = 67/115 (58.26%), Postives = 86/115 (74.78%), Query Frame = -1
Query:  252 ALKLVCASLLCILVTAPVTN-AITCGQVTGSLAPCIAFLR-TGGRFPPPPCCNGVRSLNGAARTTPDRQAACNCLKQAYRSIPGINANVAAGLPRQCGVSIPYKISPNTDCSRVR 590
            +LKL C  +LC++V AP+   A+T GQVT SLAPCI +LR +G    PP CC G++SLN AA+TTP RQAAC C+K A   I GIN  +A+GLP +CGV+IPYKISP+TDC+ V+
Sbjct:    6 SLKLACVVVLCMVVGAPLAQGAVTSGQVTNSLAPCINYLRGSGAGAVPPGCCTGIKSLNSAAQTTPVRQAACRCIKSAAAGITGINFGLASGLPGKCGVNIPYKISPSTDCNSVK 120          
BLAST of CB304428 vs. ExPASy Swiss-Prot
Match: NLTP1_GOSHI (Non-specific lipid-transfer protein OS=Gossypium hirsutum PE=3 SV=1)

HSP 1 Score: 138.272 bits (347), Expect = 3.507e-32
Identity = 67/115 (58.26%), Postives = 86/115 (74.78%), Query Frame = -1
Query:  252 ALKLVCASLLCILVTAPVTN-AITCGQVTGSLAPCIAFLR-TGGRFPPPPCCNGVRSLNGAARTTPDRQAACNCLKQAYRSIPGINANVAAGLPRQCGVSIPYKISPNTDCSRVR 590
            +LKL C  +LC++V AP+   A+T GQVT SLAPCI +LR +G    PP CC G++SLN AA+TTP RQAAC C+K A   I GIN  +A+GLP +CGV+IPYKISP+TDC+ V+
Sbjct:    2 SLKLACVVVLCMVVGAPLAQGAVTSGQVTNSLAPCINYLRGSGAGAVPPGCCTGIKSLNSAAQTTPVRQAACRCIKSAAAGITGINFGLASGLPGKCGVNIPYKISPSTDCNSVK 116          
BLAST of CB304428 vs. ExPASy Swiss-Prot
Match: NLTP1_TOBAC (Non-specific lipid-transfer protein 1 OS=Nicotiana tabacum GN=LTP1 PE=1 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 5.981e-32
Identity = 66/111 (59.46%), Postives = 81/111 (72.97%), Query Frame = -1
Query:  252 KLVCASLLCILVTAPVTNAITCGQVTGSLAPCIAFLRTGGRFPPPPCCNGVRSLNGAARTTPDRQAACNCLKQAYRSIPGINANVAAGLPRQCGVSIPYKISPNTDCSRVR 584
            K+ C  +LC++V AP   AITCGQVT +LAPC+A+LR  G  P   CC GV++L  +ARTT DRQ AC CLK A  +I GIN   AAGLP  CGV+IPYKISP+TDCS+V+
Sbjct:    6 KIACFVVLCMVVAAPCAEAITCGQVTSNLAPCLAYLRNTG--PLGRCCGGVKALVNSARTTEDRQIACTCLKSAAGAISGINLGKAAGLPSTCGVNIPYKISPSTDCSKVQ 114          
BLAST of CB304428 vs. ExPASy Swiss-Prot
Match: NLTP_CICAR (Non-specific lipid-transfer protein OS=Cicer arietinum PE=3 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 1.924e-30
Identity = 66/116 (56.90%), Postives = 87/116 (75.00%), Query Frame = -1
Query:  252 MAALKLVCASLLCILVTAPVT-NAITCGQVTGSLAPCIAFLRTGGRFPPPPCCNGVRSLNGAARTTPDRQAACNCLKQAYRSIPGINANVAAGLPRQCGVSIPYKISPNTDCSRVR 596
            MA++K+VC +L+  +V AP+  +AITCG+V  +LAPC+ +L+ GG  P   CC GVR+LN AA TTPDRQAACNCLK A  SI  +NAN AA LP +C V+IPYKIS +T+C+ +R
Sbjct:    1 MASMKVVCVALIMCIVIAPMAESAITCGRVDTALAPCLGYLQ-GGPGPSAQCCGGVRNLNSAAVTTPDRQAACNCLKSAAGSISRLNANNAAALPGKCVVNIPYKISTSTNCATIR 115          
BLAST of CB304428 vs. ExPASy Swiss-Prot
Match: NLTP_BETVU (Non-specific lipid-transfer protein OS=Beta vulgaris GN=IWF1' PE=3 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 5.598e-30
Identity = 61/113 (53.98%), Postives = 77/113 (68.14%), Query Frame = -1
Query:  255 AALKLVCASLLCILVTAPVTNAITCGQVTGSLAPCIAFLRTGGRFPPPPCCNGVRSLNGAARTTPDRQAACNCLKQAYRSIPGINANVAAGLPRQCGVSIPYKISPNTDCSRV 593
            A +K  CA ++C++V AP+  AITCG V   LAPCI +L+ G   P   CC G++SLN AA +  DR+ AC CLK A  SI GIN   AA LPRQCGVS+PY ISPNT+C+ +
Sbjct:    5 AFVKFTCALVMCMMVAAPLAEAITCGLVASKLAPCIGYLQ-GAPGPSAACCGGIKSLNSAAASPADRKTACTCLKSAATSIKGINYGKAASLPRQCGVSVPYAISPNTNCNAI 116          
The following BLAST results are available for this feature:
BLAST of CB304428 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 81
Match NameE-valueIdentityDescription
NLTP_HELAN1.625e-3762.83Non-specific lipid-transfer protein OS=Helianthus ... [more]
NLTP1_PRUDU1.521e-3558.77Non-specific lipid-transfer protein 1 OS=Prunus du... [more]
NLTP_PRUAV4.426e-3557.02Non-specific lipid-transfer protein OS=Prunus aviu... [more]
NLTP_MALDO1.574e-3258.77Non-specific lipid-transfer protein OS=Malus domes... [more]
LTP1_MORNI1.574e-3270.65Non-specific lipid-transfer protein 1 OS=Morus nig... [more]
NLTP2_GOSHI3.507e-3258.26Non-specific lipid-transfer protein OS=Gossypium h... [more]
NLTP1_GOSHI3.507e-3258.26Non-specific lipid-transfer protein OS=Gossypium h... [more]
NLTP1_TOBAC5.981e-3259.46Non-specific lipid-transfer protein 1 OS=Nicotiana... [more]
NLTP_CICAR1.924e-3056.90Non-specific lipid-transfer protein OS=Cicer ariet... [more]
NLTP_BETVU5.598e-3053.98Non-specific lipid-transfer protein OS=Beta vulgar... [more]

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Properties
Property NameValue
Genbank descriptionFLAVEDO0001_IIIaR_F10 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0001_IIIaR_F10 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB304428 ID=CB304428; Name=CB304428; organism=Citrus sinensis; type=EST; length=665bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGCGATAATACCACAAAATAA
CTAGAATTAATCACTCAAAACACAGATCACGTTTACATATTTAATATGAT
ATTAAAAGCAAAGATACAAACATGACATGAGAGTGAGACTCACACAAGTG
GAGACTCGTTCGGACAAAGAAATTAACATATATATTCTTTATCTATTTAT
TCTTCTCAGTCAATCATACTTGGAAAGTCACAGAGCTCAAACTCAACTTC
ACCTGACCCTAGAGCAGTCAGTGTTGGGGCTGATCTTGTAAGGAATGCTG
ACTCCACATTGACGAGGAAGGCCAGCGGCAACATTAGCGTTGATGCCGGG
GATTGATCGGTAAGCTTGCTTCAAGCAGTTGCATGCAGCTTGGCGGTCAG
GGGTGGTTCTGGCGGCGCCGTTGAGAGACCTGACGCCGTTACAGCATGGG
GGTGGAGGAAAACGCCCTCCAGTTCTCAAGAAAGCGATGCATGGAGCCAA
GGAGCCTGTCACCTGCCCACATGTTATGGCATTAGTCACTGGGGCAGTCA
CCAGAATGCACAAAAGCGAAGCACAAACAAGCTTAAGAGCAGCCATGAGG
ATTTTTCAGGGAGGCTTTTGCTTGGTTATAGCTAGTTATCAGGTTCTGTT
TACAAGCTTGAGTCC
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