CB304442

Overview
NameCB304442
Unique NameCB304442
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length484
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CB304442_ssr260 microsatellite CB304442_ssr260:260..274. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
[Close]
BLAST of CB304442 vs. ExPASy Swiss-Prot
Match: AAPC_CENCI (Putative glucose-6-phosphate 1-epimerase OS=Cenchrus ciliaris PE=2 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 5.314e-13
Identity = 37/56 (66.07%), Postives = 40/56 (71.43%), Query Frame = -2 
Query:  316 DMGVDGYKPMLCVDFAAIENLIVLKPFEEWRGRQELFTVSSSYCSGQLDPGRVLHG 483
            D G   YK MLCV+ AA+E  I LKP EEWRGR  L  V SSYCSGQLDP +VLHG
Sbjct:  274 DFGDAEYKNMLCVEPAAVEKPITLKPGEEWRGRIALSAVPSSYCSGQLDPLKVLHG 329
The following BLAST results are available for this feature:
BLAST of CB304442 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
AAPC_CENCI5.314e-1366.07Putative glucose-6-phosphate 1-epimerase OS=Cenchr... [more]
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Properties
Property NameValue
Genbank descriptionFLAVEDO0001_IIIaR_H09 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0001_IIIaR_H09 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB304442 ID=CB304442; Name=CB304442; organism=Citrus sinensis; type=EST; length=484bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGGGAAAAAGGGATTCTTTAT
GCTTAATGCTTACTCATTCATTCAACAGTTTTTTGATACAAAACAATGAG
ACCTTACCATCAATCACAAAGAGGCAACATTGATAAATATTTATGTTGCT
CAATTCTGTGACATTTTGTATGTTGTTGGTAGCTACTACATACAGCTGGG
TAAAATAAAAAATGATACATAAACAAGCAAGTGCGGGGATACTGTACATT
AAATAAGAGAAATAAAATAAAATACTAAAAAAACTTTGTTGAGTCCGTGC
ATGAAATCAATGAAAGCCATGGAGAACTCTCCCAGGATCCAATTGCCCAC
TGCAATAGCTTGACGACACAGTAAAAAGCTCTTGACGGCCCCTCCACTCT
TCAAAGGGTTTCAAGACAATAAGATTTTCAATTGCAGCAAAATCCACACA
TAACATGGGTTTGTAACCGTCAACCCCCATATCT
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