CB304474

Overview
NameCB304474
Unique NameCB304474
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length648
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CB304474_ssr615 microsatellite CB304474_ssr615:615..634. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig5598 contig Csv1_Contig5598:9..658. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB304474 vs. ExPASy Swiss-Prot
Match: MIFH_TRISP (Macrophage migration inhibitory factor homolog OS=Trichinella spiralis PE=1 SV=2)

HSP 1 Score: 97.8265 bits (242), Expect = 5.030e-20
Identity = 48/115 (41.74%), Postives = 70/115 (60.87%), Query Frame = -2
Query:  216 MPCLNISTNVKLDGVDTSSILSEATSTVANIIGKPEAYVMIVLKGSVPMSFGGTEDPAAYGELVSIGGLNPDVNKKLSAAISAILEKKLSVPKSRFFIKFYDTKGSNFGWNGSPF 560
            MP   ++TN+K   V  S  LS  ++ V NI+ KP +YV + +     +SFGG+  PAA+G L+SIGG+ P  N+  SA +   L KKL +PK+R +I F +  G + GWNG+ F
Sbjct:    1 MPIFTLNTNIKATDVP-SDFLSSTSALVGNILSKPGSYVAVHINTDQQLSFGGSTKPAAFGTLMSIGGIEPSRNRDHSAKLFDHLNKKLGIPKNRMYIHFVNLNGDDVGWNGTTF 114          
BLAST of CB304474 vs. ExPASy Swiss-Prot
Match: MIFH_TRITR (Macrophage migration inhibitory factor homolog OS=Trichuris trichiura PE=1 SV=2)

HSP 1 Score: 91.6633 bits (226), Expect = 3.605e-18
Identity = 43/115 (37.39%), Postives = 69/115 (60.00%), Query Frame = -2
Query:  216 MPCLNISTNVKLDGVDTSSILSEATSTVANIIGKPEAYVMIVLKGSVPMSFGGTEDPAAYGELVSIGGLNPDVNKKLSAAISAILEKKLSVPKSRFFIKFYDTKGSNFGWNGSPF 560
            MP    STNV  + +     L   +  +A ++GKPE+YV + + G   ++FGGT+ PA +G+L+S+GG+  + N+  SA +   L   L +P +R +I F D +GS+ G+NGS F
Sbjct:    1 MPIFTFSTNVPSENISVD-FLKSTSKLIAGMLGKPESYVAVHINGGQKITFGGTDAPAGFGQLLSLGGVGGEKNRSHSAKLFKHLTDGLGIPGNRMYINFVDMRGSDVGYNGSTF 114          
BLAST of CB304474 vs. ExPASy Swiss-Prot
Match: MIFH_BRUMA (Macrophage migration inhibitory factor homolog OS=Brugia malayi GN=BMBAC01P19.1 PE=3 SV=4)

HSP 1 Score: 88.9669 bits (219), Expect = 2.337e-17
Identity = 46/115 (40.00%), Postives = 70/115 (60.87%), Query Frame = -2
Query:  216 MPCLNISTNVKLDGVDTSSILSEATSTVANIIGKPEAYVMIVLKGSVPMSFGGTEDPAAYGELVSIGGLNPDVNKKLSAAISAILEKKLSVPKSRFFIKFYDTKGSNFGWNGSPF 560
            MP   I TN+  + + +S+ L +A++ VA  +GKPE+YV I + G   M FGG+EDP A   L SIG + P VN   +  +  +L  +L +PK+R +I+F D + S+  +NGS F
Sbjct:    1 MPYFTIDTNIPQNSI-SSAFLKKASNVVAKALGKPESYVSIHVNGGQAMVFGGSEDPCAVCVLKSIGCVGPKVNNSHAEKLYKLLADELKIPKNRCYIEFVDIEASSMAFNGSTF 114          
BLAST of CB304474 vs. ExPASy Swiss-Prot
Match: MIF_XENLA (Macrophage migration inhibitory factor OS=Xenopus laevis GN=mif PE=1 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 2.583e-16
Identity = 46/115 (40.00%), Postives = 63/115 (54.78%), Query Frame = -2
Query:  216 MPCLNISTNVKLDGVDTSSILSEATSTVANIIGKPEAYVMIVLKGSVPMSFGGTEDPAAYGELVSIGGLNPDVNKKLSAAISAILEKKLSVPKSRFFIKFYDTKGSNFGWNGSPF 560
            MP   I TNV  D V   ++LS+ T  +A   GKP  Y+ I +     MSFG + DP A   L SIG +    NK  +  +  IL K+L++P +R +I +YD   +N GWNGS F
Sbjct:    1 MPVFTIRTNVCRDSVP-DTLLSDLTKQLAKATGKPAEYIAIHIVPDQIMSFGDSTDPCAVCSLCSIGKIGGPQNKSYTKLLCDILTKQLNIPANRVYINYYDLNAANVGWNGSTF 114          
BLAST of CB304474 vs. ExPASy Swiss-Prot
Match: MIFH_WUCBA (Macrophage migration inhibitory factor homolog OS=Wuchereria bancrofti GN=MIF PE=3 SV=3)

HSP 1 Score: 84.3445 bits (207), Expect = 5.755e-16
Identity = 45/115 (39.13%), Postives = 66/115 (57.39%), Query Frame = -2
Query:  216 MPCLNISTNVKLDGVDTSSILSEATSTVANIIGKPEAYVMIVLKGSVPMSFGGTEDPAAYGELVSIGGLNPDVNKKLSAAISAILEKKLSVPKSRFFIKFYDTKGSNFGWNGSPF 560
            MP   I TN   D + +S+ L +A + V   +GKPE+YV I + G  PM FGG+EDP     L SIG + P VN   +  +  +L  +L +PK+R +I+  D + S+  +NGS F
Sbjct:    1 MPYFTIDTNKPQDSI-SSAFLKKAPNVVPKALGKPESYVSIHVNGGQPMVFGGSEDPCPVCVLKSIGCVGPKVNNSHAEKLYKLLADELKIPKNRCYIESVDIEASSMAFNGSTF 114          
BLAST of CB304474 vs. ExPASy Swiss-Prot
Match: MIF_XENTR (Macrophage migration inhibitory factor OS=Xenopus tropicalis GN=mif PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 4.872e-15
Identity = 43/115 (37.39%), Postives = 62/115 (53.91%), Query Frame = -2
Query:  216 MPCLNISTNVKLDGVDTSSILSEATSTVANIIGKPEAYVMIVLKGSVPMSFGGTEDPAAYGELVSIGGLNPDVNKKLSAAISAILEKKLSVPKSRFFIKFYDTKGSNFGWNGSPF 560
            MP   + TNV  D +   ++LS+ T  +A   GKP  Y+ I +     MSFG + DP A   L SIG +    NK  S  +   L K++++P +R +I F+D   +N GWNGS F
Sbjct:    1 MPTFTVCTNVCRDSMP-DTLLSDLTKLLAKATGKPAEYIAIHIMPDQMMSFGDSTDPCAVCSLSSIGKIGGPQNKSYSKLLCDYLTKQMNIPANRVYINFHDLNPANVGWNGSTF 114          
BLAST of CB304474 vs. ExPASy Swiss-Prot
Match: MIF_CHICK (Macrophage migration inhibitory factor OS=Gallus gallus GN=MIF PE=3 SV=3)

HSP 1 Score: 80.8777 bits (198), Expect = 6.363e-15
Identity = 44/115 (38.26%), Postives = 59/115 (51.30%), Query Frame = -2
Query:  216 MPCLNISTNVKLDGVDTSSILSEATSTVANIIGKPEAYVMIVLKGSVPMSFGGTEDPAAYGELVSIGGLNPDVNKKLSAAISAILEKKLSVPKSRFFIKFYDTKGSNFGWNGSPF 560
            MP   I TNV  D V   S+L E T  +A   GKP  Y+ + +     MSFGG+ DP A   L SIG +    NK  +  +  ++ K L V   R +I ++D   +N GWNGS F
Sbjct:    1 MPMFTIHTNVCKDAVP-DSLLGELTQQLAKATGKPAQYIAVHIVPDQMMSFGGSTDPCALCSLYSIGKIGGQQNKTYTKLLCDMIAKHLHVSADRVYINYFDINAANVGWNGSTF 114          
BLAST of CB304474 vs. ExPASy Swiss-Prot
Match: MIF_RAT (Macrophage migration inhibitory factor OS=Rattus norvegicus GN=Mif PE=1 SV=4)

HSP 1 Score: 75.8702 bits (185), Expect = 2.047e-13
Identity = 41/115 (35.65%), Postives = 57/115 (49.57%), Query Frame = -2
Query:  216 MPCLNISTNVKLDGVDTSSILSEATSTVANIIGKPEAYVMIVLKGSVPMSFGGTEDPAAYGELVSIGGLNPDVNKKLSAAISAILEKKLSVPKSRFFIKFYDTKGSNFGWNGSPF 560
            MP   ++TNV    V     LSE T  +A   GKP  Y+ + +     M+F GT DP A   L SIG +    N+  S  +  +L  +L +   R +I +YD   +N GWNGS F
Sbjct:    1 MPMFIVNTNVPRASVP-EGFLSELTQQLAQATGKPAQYIAVHVVPDQLMTFSGTSDPCALCSLHSIGKIGGAQNRNYSKLLCGLLSDRLHISPDRVYINYYDMNAANVGWNGSTF 114          
BLAST of CB304474 vs. ExPASy Swiss-Prot
Match: MIF_MOUSE (Macrophage migration inhibitory factor OS=Mus musculus GN=Mif PE=1 SV=2)

HSP 1 Score: 75.8702 bits (185), Expect = 2.047e-13
Identity = 41/115 (35.65%), Postives = 57/115 (49.57%), Query Frame = -2
Query:  216 MPCLNISTNVKLDGVDTSSILSEATSTVANIIGKPEAYVMIVLKGSVPMSFGGTEDPAAYGELVSIGGLNPDVNKKLSAAISAILEKKLSVPKSRFFIKFYDTKGSNFGWNGSPF 560
            MP   ++TNV    V     LSE T  +A   GKP  Y+ + +     M+F GT DP A   L SIG +    N+  S  +  +L  +L +   R +I +YD   +N GWNGS F
Sbjct:    1 MPMFIVNTNVPRASVP-EGFLSELTQQLAQATGKPAQYIAVHVVPDQLMTFSGTNDPCALCSLHSIGKIGGAQNRNYSKLLCGLLSDRLHISPDRVYINYYDMNAANVGWNGSTF 114          
BLAST of CB304474 vs. ExPASy Swiss-Prot
Match: MIF_MERUN (Macrophage migration inhibitory factor OS=Meriones unguiculatus GN=MIF PE=3 SV=3)

HSP 1 Score: 75.485 bits (184), Expect = 2.673e-13
Identity = 40/115 (34.78%), Postives = 58/115 (50.43%), Query Frame = -2
Query:  216 MPCLNISTNVKLDGVDTSSILSEATSTVANIIGKPEAYVMIVLKGSVPMSFGGTEDPAAYGELVSIGGLNPDVNKKLSAAISAILEKKLSVPKSRFFIKFYDTKGSNFGWNGSPF 560
            MP   ++TNV    V    +LSE T  +A   GKP  Y+ + +     M+F G+ DP A   L SIG +    N+  S  +  +L  +L +   R +I +YD   +N GWNGS F
Sbjct:    1 MPMFIVNTNVPRSSVP-EGLLSELTQQLAQATGKPAQYIAVHVVPDQLMTFSGSSDPCALCSLHSIGKIGGAQNRTYSKLLCGLLADRLRISPDRIYINYYDMNAANVGWNGSTF 114          
The following BLAST results are available for this feature:
BLAST of CB304474 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 16
Match NameE-valueIdentityDescription
MIFH_TRISP5.030e-2041.74Macrophage migration inhibitory factor homolog OS=... [more]
MIFH_TRITR3.605e-1837.39Macrophage migration inhibitory factor homolog OS=... [more]
MIFH_BRUMA2.337e-1740.00Macrophage migration inhibitory factor homolog OS=... [more]
MIF_XENLA2.583e-1640.00Macrophage migration inhibitory factor OS=Xenopus ... [more]
MIFH_WUCBA5.755e-1639.13Macrophage migration inhibitory factor homolog OS=... [more]
MIF_XENTR4.872e-1537.39Macrophage migration inhibitory factor OS=Xenopus ... [more]
MIF_CHICK6.363e-1538.26Macrophage migration inhibitory factor OS=Gallus g... [more]
MIF_RAT2.047e-1335.65Macrophage migration inhibitory factor OS=Rattus n... [more]
MIF_MOUSE2.047e-1335.65Macrophage migration inhibitory factor OS=Mus musc... [more]
MIF_MERUN2.673e-1334.78Macrophage migration inhibitory factor OS=Meriones... [more]

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Properties
Property NameValue
Genbank descriptionFLAVEDO0001_IIaR_C11 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0001_IIaR_C11 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB304474 ID=CB304474; Name=CB304474; organism=Citrus sinensis; type=EST; length=648bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCTTCCATAGACCAAACAGTT
CCTATTCCACAATATTGTTGGCTAGCACCAACGAGAAGAAAACACATCAT
AGGAGAAATTACACAATATTCAGCCAATTATTAACATAGTTCTAAAGATT
GTAATCACCATATAGATAAGACAATTGTCAGAGTTCATGGCGCCATGCTT
TGAGAATAATATCTAGAAGGGGGATCCATTCCATCCAAAGTTTGAACCCT
TTGTGTCATAAAACTTGATGAAAAATCGTGACTTGGGTACCGACAGCTTC
TTTTCAAGAATTGCAGAAATTGCAGCACTCAGCTTCTTGTTCACATCAGG
GTTAAGGCCACCAATGGACACCAACTCACCATAAGCTGCCGGATCCTCAG
TTCCACCAAACGACATAGGTACCGATCCCTTCAACACAATCATCACGTAG
GCCTCGGGTTTGCCGATGATGTTGGCGACAGTGGAGGTGGCCTCGGAGAG
GATGGATGACGTGTCAACGCCATCGAGTTTGACGTTAGTTGAAATGTTCA
AGCAAGGCATCTTCTCGAAACTTCCGACGGAAAACCCTACTCTTGTAGCT
TCCCTAACCACTCGCTTTCTTTCTTTCTTTCTTTCACTGATAGTCCCC
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