CB304475

Overview
NameCB304475
Unique NameCB304475
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length572
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB304475 vs. ExPASy Swiss-Prot
Match: BR44_HUMAN (Brain protein 44 OS=Homo sapiens GN=BRP44 PE=1 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 9.061e-25
Identity = 50/95 (52.63%), Postives = 66/95 (69.47%), Query Frame = -1
Query:  270 EIDLMAANKLVALWNHPAGPKTIHFWAPTFKWGISIANIADFSKPPEKISYPQRLAVTATGVIWSRYSMVITPKNWNLFSVNVAMAGTGLYQLSR 554
            +++LM   KL  L+NHPAGP+T+ FWAP  KWG+  A +AD ++P EK+S  Q   + ATG IWSRYS+VI PKNW+LF+VN  +   G  QL R
Sbjct:   19 KVELMLPEKLRPLYNHPAGPRTVFFWAPIMKWGLVCAGLADMARPAEKLSTAQSAVLMATGFIWSRYSLVIIPKNWSLFAVNFFVGAAGASQLFR 113          
BLAST of CB304475 vs. ExPASy Swiss-Prot
Match: BR44_RAT (Brain protein 44 OS=Rattus norvegicus GN=Brp44 PE=2 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 1.546e-24
Identity = 52/109 (47.71%), Postives = 72/109 (66.06%), Query Frame = -1
Query:  228 EIDLMAANKLVALWNHPAGPKTIHFWAPTFKWGISIANIADFSKPPEKISYPQRLAVTATGVIWSRYSMVITPKNWNLFSVNVAMAGTGLYQLSRKIKQDYFSESTEIE 554
            +++L+   KL  L+NHPAGP+T+ FWAP  KWG+  A +AD ++P EK+S  Q   + ATG IWSRYS+VI PKNW+LF+VN  +   G  QL R  K +   +S  I+
Sbjct:   19 KVELLLPKKLRPLYNHPAGPRTVFFWAPIMKWGLVCAGLADMARPAEKLSTAQSTVLMATGFIWSRYSLVIIPKNWSLFAVNFFVGSAGASQLFRIWKYNQELKSKGIQ 127          
BLAST of CB304475 vs. ExPASy Swiss-Prot
Match: BR44_MOUSE (Brain protein 44 OS=Mus musculus GN=Brp44 PE=1 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 2.019e-24
Identity = 49/95 (51.58%), Postives = 66/95 (69.47%), Query Frame = -1
Query:  270 EIDLMAANKLVALWNHPAGPKTIHFWAPTFKWGISIANIADFSKPPEKISYPQRLAVTATGVIWSRYSMVITPKNWNLFSVNVAMAGTGLYQLSR 554
            +++L+   KL  L+NHPAGP+T+ FWAP  KWG+  A +AD ++P EK+S  Q   + ATG IWSRYS+VI PKNW+LF+VN  +   G  QL R
Sbjct:   19 KVELLLPKKLRPLYNHPAGPRTVFFWAPIMKWGLVCAGLADMARPAEKLSTAQSTVLMATGFIWSRYSLVIIPKNWSLFAVNFFVGSAGASQLFR 113          
BLAST of CB304475 vs. ExPASy Swiss-Prot
Match: BR44_PONAB (Brain protein 44 OS=Pongo abelii GN=BRP44 PE=2 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 3.807e-23
Identity = 49/95 (51.58%), Postives = 65/95 (68.42%), Query Frame = -1
Query:  270 EIDLMAANKLVALWNHPAGPKTIHFWAPTFKWGISIANIADFSKPPEKISYPQRLAVTATGVIWSRYSMVITPKNWNLFSVNVAMAGTGLYQLSR 554
            +++LM   KL  L+NHPAGP+T+ FWAP  K G+  A +AD ++P EK+S  Q   + ATG IWSRYS+VI PKNW+LF+VN  +   G  QL R
Sbjct:   19 KVELMLPEKLRPLYNHPAGPRTVFFWAPIMKRGLVCAGLADMARPAEKLSTAQSAVLMATGFIWSRYSLVIIPKNWSLFAVNFFVGAAGASQLFR 113          
BLAST of CB304475 vs. ExPASy Swiss-Prot
Match: YXX3_CAEEL (UPF0041 protein F53F10.3 OS=Caenorhabditis elegans GN=F53F10.3 PE=2 SV=2)

HSP 1 Score: 96.6709 bits (239), Expect = 8.776e-20
Identity = 45/82 (54.88%), Postives = 57/82 (69.51%), Query Frame = -1
Query:  270 WNHPAGPKTIHFWAPTFKWGISIANIADFSKPPEKISYPQRLAVTATGVIWSRYSMVITPKNWNLFSVNVAMAGTGLYQLSR 515
            WNH AGPKT+ FWAPT KW +  A +AD ++P +K+S  Q  A+ ATG IW+RY +VITP N+ L SVN  +  TGL QL R
Sbjct:   31 WNHAAGPKTVFFWAPTIKWTLIGAGLADLARPADKLSLYQNSALFATGAIWTRYCLVITPINYYLSSVNFFVMCTGLAQLCR 112          
BLAST of CB304475 vs. ExPASy Swiss-Prot
Match: YAI9_SCHPO (UPF0041 protein C24B11.09 OS=Schizosaccharomyces pombe GN=SPAC24B11.09 PE=2 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 8.776e-20
Identity = 40/82 (48.78%), Postives = 58/82 (70.73%), Query Frame = -1
Query:  270 WNHPAGPKTIHFWAPTFKWGISIANIADFSKPPEKISYPQRLAVTATGVIWSRYSMVITPKNWNLFSVNVAMAGTGLYQLSR 515
            WNHPAGPKT+HFWAP  KW + ++ I D+++ PE +S  Q  A+ ATG IW+R+S+++ PKN+   +VN  +A  G  Q+SR
Sbjct:   10 WNHPAGPKTVHFWAPAMKWTLVLSGIGDYARSPEYLSIRQYAALCATGAIWTRWSLIVRPKNYFNATVNFFLAIVGAVQVSR 91          
BLAST of CB304475 vs. ExPASy Swiss-Prot
Match: FMP43_YEAST (UPF0041 protein FMP43 OS=Saccharomyces cerevisiae GN=FMP43 PE=1 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 2.553e-19
Identity = 42/82 (51.22%), Postives = 55/82 (67.07%), Query Frame = -1
Query:  270 WNHPAGPKTIHFWAPTFKWGISIANIADFSKPPEKISYPQRLAVTATGVIWSRYSMVITPKNWNLFSVNVAMAGTGLYQLSR 515
            WN   GPKT+HFWAPT KWG+  A + D  +P EK+S  Q L++ AT +IW+R+S VI PKN+ L SVN  +  T  Y L+R
Sbjct:   14 WNSETGPKTVHFWAPTLKWGLVFAGLNDIKRPVEKVSGAQNLSLLATALIWTRWSFVIKPKNYLLASVNFFLGCTAGYHLTR 95          
BLAST of CB304475 vs. ExPASy Swiss-Prot
Match: YHW2_YEAST (UPF0041 protein YHR162W OS=Saccharomyces cerevisiae GN=YHR162W PE=1 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 8.214e-18
Identity = 41/82 (50.00%), Postives = 53/82 (64.63%), Query Frame = -1
Query:  270 WNHPAGPKTIHFWAPTFKWGISIANIADFSKPPEKISYPQRLAVTATGVIWSRYSMVITPKNWNLFSVNVAMAGTGLYQLSR 515
            W    GPKT+HFWAPT KWG+  A  +D  +P EKIS  Q L++ +T +IW+R+S VI P+N  L SVN  +  T  YQL R
Sbjct:   14 WQSETGPKTVHFWAPTLKWGLVFAGFSDMKRPVEKISGAQNLSLLSTALIWTRWSFVIKPRNILLASVNSFLCLTAGYQLGR 95          
The following BLAST results are available for this feature:
BLAST of CB304475 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 8
Match NameE-valueIdentityDescription
BR44_HUMAN9.061e-2552.63Brain protein 44 OS=Homo sapiens GN=BRP44 PE=1 SV=... [more]
BR44_RAT1.546e-2447.71Brain protein 44 OS=Rattus norvegicus GN=Brp44 PE=... [more]
BR44_MOUSE2.019e-2451.58Brain protein 44 OS=Mus musculus GN=Brp44 PE=1 SV=... [more]
BR44_PONAB3.807e-2351.58Brain protein 44 OS=Pongo abelii GN=BRP44 PE=2 SV=... [more]
YXX3_CAEEL8.776e-2054.88UPF0041 protein F53F10.3 OS=Caenorhabditis elegans... [more]
YAI9_SCHPO8.776e-2048.78UPF0041 protein C24B11.09 OS=Schizosaccharomyces p... [more]
FMP43_YEAST2.553e-1951.22UPF0041 protein FMP43 OS=Saccharomyces cerevisiae ... [more]
YHW2_YEAST8.214e-1850.00UPF0041 protein YHR162W OS=Saccharomyces cerevisia... [more]
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Properties
Property NameValue
Genbank descriptionFLAVEDO0001_IIaR_C12 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0001_IIaR_C12 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB304475 ID=CB304475; Name=CB304475; organism=Citrus sinensis; type=EST; length=572bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGGGAATCATATTAATTTTCA
TTTTCATTACAATCAATTTGGCACCGTTAGACAACTCGCACCAACCAATC
CAACAACAAACGAAGATAGCATTTTTGAAATGCATTCAGTTTTTCACAAT
AGCAAAAAGAAAAAAGGAAAAATGGTACAAGTTTAGGCTTTAGGAAATTT
GCATCATCATTCTTGCACTGCAGCTGCCTCTATCTCGGTGCTCTCGGAGA
AGTAATCTTGCTTGATTTTGCGTGATAGTTGATACAAGCCCGTCCCAGCC
ATTGCAACGTTGACACTAAAAAGGTTCCAGTTTTTCGGAGTAATCACCAT
GCTGTAGCGCGACCAAATAACTCCGGTAGCAGTAACAGCTAGTCGCTGAG
GATAGGAGATCTTTTCTGGTGGCTTTGAAAAGTCTGCAATGTTTGCTATG
CTGATGCCCCATTTGAATGTTGGAGCCCAAAAATGAATGGTTTTAGGACC
AGCCGGGTGGTTCCAGAGAGCTACGAGCTTGTTAGCTGCCATCAGATCGA
TTTCTTTTTTTTTTTTTCCTTT
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