CB304486 | Citrus Genome Database

Overview


Name	CB304486
Unique Name	CB304486
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	616

Libraries


Library Name	Type
Flavedo Mature	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Alignments

Feature Name	Type	Location	Analysis
CB304486_ssr177	microsatellite	CB304486_ssr177:177..194.	BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig6849	contig	Csv1_Contig6849:451..1066.	BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1

Homology

[Close]

BLAST of CB304486 vs. ExPASy Swiss-Prot
Match: HS17A_ORYSJ (17.9 kDa class I heat shock protein OS=Oryza sativa subsp. japonica GN=HSP17.9A PE=2 SV=1)

HSP 1 Score: 151.369 bits (381), Expect = 3.424e-36
Identity = 77/115 (66.96%), Postives = 87/115 (75.65%), Query Frame = -3

Query:  270 EISQFANARIDWKETPQAHVFKADLPGLRXXXXXXXXXEGRILQISGERSKEQEEKNDKWHRVERSSGKFLRRFRLPDNVKVEQVKASMEYGVLTVTXXXXXXXXXXXKAIEISG 614
            E + FA ARIDWKETP+AHVFKAD+PGL+         +G ILQISGER+KEQEEK D+WHRVERSSGKFLRRFRLPDN K EQ+KASME GVLTVT           K+I+ISG
Sbjct:   47 ETAAFAGARIDWKETPEAHVFKADVPGLKKEEVKVEVDDGNILQISGERNKEQEEKTDQWHRVERSSGKFLRRFRLPDNAKPEQIKASMENGVLTVTVPKEEAKKPDVKSIQISG 161

[Close]

BLAST of CB304486 vs. ExPASy Swiss-Prot
Match: HS181_ORYSJ (18.1 kDa class I heat shock protein OS=Oryza sativa subsp. japonica GN=HSP18.1 PE=2 SV=1)

HSP 1 Score: 150.599 bits (379), Expect = 5.841e-36
Identity = 75/115 (65.22%), Postives = 87/115 (75.65%), Query Frame = -3

Query:  270 EISQFANARIDWKETPQAHVFKADLPGLRXXXXXXXXXEGRILQISGERSKEQEEKNDKWHRVERSSGKFLRRFRLPDNVKVEQVKASMEYGVLTVTXXXXXXXXXXXKAIEISG 614
            E + FA ARIDWKETP+AHVFKAD+PGL+         +G +LQISGERSKEQEEK DKWHRVERSSGKFLRRFRLP+N K EQ+KASME GVLTVT           K+I+++G
Sbjct:   47 ETAAFAGARIDWKETPEAHVFKADVPGLKKEEVKVEVEDGNVLQISGERSKEQEEKTDKWHRVERSSGKFLRRFRLPENTKPEQIKASMENGVLTVTVPKEEPKKPDVKSIQVTG 161

[Close]

BLAST of CB304486 vs. ExPASy Swiss-Prot
Match: HSP11_DAUCA (17.8 kDa class I heat shock protein OS=Daucus carota PE=3 SV=1)

HSP 1 Score: 149.058 bits (375), Expect = 1.699e-35
Identity = 75/115 (65.22%), Postives = 87/115 (75.65%), Query Frame = -3

Query:  270 EISQFANARIDWKETPQAHVFKADLPGLRXXXXXXXXXEGRILQISGERSKEQEEKNDKWHRVERSSGKFLRRFRLPDNVKVEQVKASMEYGVLTVTXXXXXXXXXXXKAIEISG 614
            E + F N  IDWKETPQAHVFKADLPGL+         EG++LQISGER+KE+EEKNDKWHRVERSSGKFLRRFRLP+N KV++VKA+M  GV+TVT           KAI+ISG
Sbjct:   43 ETAAFVNTHIDWKETPQAHVFKADLPGLKKEEVKVELEEGKVLQISGERNKEKEEKNDKWHRVERSSGKFLRRFRLPENAKVDEVKAAMANGVVTVTVPKVEIKKPEVKAIDISG 157

[Close]

BLAST of CB304486 vs. ExPASy Swiss-Prot
Match: HS177_ORYSJ (17.7 kDa class I heat shock protein OS=Oryza sativa subsp. japonica GN=HSP17.7 PE=2 SV=1)

HSP 1 Score: 149.058 bits (375), Expect = 1.699e-35
Identity = 75/115 (65.22%), Postives = 87/115 (75.65%), Query Frame = -3

Query:  270 EISQFANARIDWKETPQAHVFKADLPGLRXXXXXXXXXEGRILQISGERSKEQEEKNDKWHRVERSSGKFLRRFRLPDNVKVEQVKASMEYGVLTVTXXXXXXXXXXXKAIEISG 614
            + + FA ARIDWKETP+ HVFKAD+PGL+         +G ILQISGERS+EQEEK+DKWHRVERSSGKFLRRFRLP+N K EQ+KASME GVLTVT           K+I+ISG
Sbjct:   45 DAAAFAGARIDWKETPEVHVFKADVPGLKKEEVKVEVDDGNILQISGERSREQEEKSDKWHRVERSSGKFLRRFRLPENTKPEQIKASMENGVLTVTVPKEEPKKPDVKSIQISG 159

[Close]

BLAST of CB304486 vs. ExPASy Swiss-Prot
Match: HS16C_ORYSJ (16.9 kDa class I heat shock protein 3 OS=Oryza sativa subsp. japonica GN=HSP16.9C PE=2 SV=1)

HSP 1 Score: 149.058 bits (375), Expect = 1.699e-35
Identity = 74/115 (64.35%), Postives = 89/115 (77.39%), Query Frame = -3

Query:  270 EISQFANARIDWKETPQAHVFKADLPGLRXXXXXXXXXEGRILQISGERSKEQEEKNDKWHRVERSSGKFLRRFRLPDNVKVEQVKASMEYGVLTVTXXXXXXXXXXXKAIEISG 614
            + + FANAR+DWKETP++HVFKADLPG++         EG +L ISG+RSKE+E+KNDKWHRVERSSG+F+RRFRLP+N KV+QVKASME GVLTVT           KAIEISG
Sbjct:   35 DTAAFANARVDWKETPESHVFKADLPGVKKEEVKVEVEEGNVLVISGQRSKEKEDKNDKWHRVERSSGQFMRRFRLPENAKVDQVKASMENGVLTVTVPKAEVKKPEVKAIEISG 149

[Close]

BLAST of CB304486 vs. ExPASy Swiss-Prot
Match: HSP12_SOLPE (17.6 kDa class I heat shock protein OS=Solanum peruvianum PE=2 SV=1)

HSP 1 Score: 148.673 bits (374), Expect = 2.219e-35
Identity = 76/115 (66.09%), Postives = 87/115 (75.65%), Query Frame = -3

Query:  270 EISQFANARIDWKETPQAHVFKADLPGLRXXXXXXXXXEGRILQISGERSKEQEEKNDKWHRVERSSGKFLRRFRLPDNVKVEQVKASMEYGVLTVTXXXXXXXXXXXKAIEISG 614
            E S FAN RIDWKETP+AHVFKADLPGL+         E R+LQISGER+ E+E+KND WHRVERSSGKF+RRFRLP+N K++QVKASME GVLTVT           K+IEISG
Sbjct:   40 ETSAFANTRIDWKETPEAHVFKADLPGLKKEEVKVEVEEDRVLQISGERNVEKEDKNDTWHRVERSSGKFMRRFRLPENAKMDQVKASMENGVLTVTVPKEEVNNPDVKSIEISG 154

[Close]

BLAST of CB304486 vs. ExPASy Swiss-Prot
Match: HSP11_SOLPE (17.7 kDa class I heat shock protein OS=Solanum peruvianum PE=2 SV=1)

HSP 1 Score: 148.288 bits (373), Expect = 2.899e-35
Identity = 76/115 (66.09%), Postives = 87/115 (75.65%), Query Frame = -3

Query:  270 EISQFANARIDWKETPQAHVFKADLPGLRXXXXXXXXXEGRILQISGERSKEQEEKNDKWHRVERSSGKFLRRFRLPDNVKVEQVKASMEYGVLTVTXXXXXXXXXXXKAIEISG 614
            E S FAN RIDWKETP+AHVFKADLPGL+         E R+LQISGER+ E+E+KNDKW RVERSSGKF+RRFRLP+N K++QVKASME GVLTVT           K+IEISG
Sbjct:   40 ETSAFANTRIDWKETPEAHVFKADLPGLKLEEVKVEVEEDRVLQISGERNMEKEDKNDKWQRVERSSGKFMRRFRLPENAKMDQVKASMENGVLTVTVPKEEMKKPDVKSIEISG 154

[Close]

BLAST of CB304486 vs. ExPASy Swiss-Prot
Match: HS17C_ARATH (17.6 kDa class I heat shock protein 3 OS=Arabidopsis thaliana GN=HSP17.6C PE=2 SV=2)

HSP 1 Score: 148.288 bits (373), Expect = 2.899e-35
Identity = 72/115 (62.61%), Postives = 87/115 (75.65%), Query Frame = -3

Query:  270 EISQFANARIDWKETPQAHVFKADLPGLRXXXXXXXXXEGRILQISGERSKEQEEKNDKWHRVERSSGKFLRRFRLPDNVKVEQVKASMEYGVLTVTXXXXXXXXXXXKAIEISG 614
            +++ F NA++DW+ETP+AHVFKADLPGLR         +G ILQISGERS E EEKNDKWHRVERSSGKF RRFRLP+N K+E++KASME GVL+VT           K+I+ISG
Sbjct:   43 DVAAFTNAKVDWRETPEAHVFKADLPGLRKEEVKVEVEDGNILQISGERSNENEEKNDKWHRVERSSGKFTRRFRLPENAKMEEIKASMENGVLSVTVPKVPEKKPEVKSIDISG 157

[Close]

BLAST of CB304486 vs. ExPASy Swiss-Prot
Match: HS16B_ORYSJ (16.9 kDa class I heat shock protein 2 OS=Oryza sativa subsp. japonica GN=HSP16.9B PE=2 SV=1)

HSP 1 Score: 147.902 bits (372), Expect = 3.786e-35
Identity = 74/115 (64.35%), Postives = 88/115 (76.52%), Query Frame = -3

Query:  270 EISQFANARIDWKETPQAHVFKADLPGLRXXXXXXXXXEGRILQISGERSKEQEEKNDKWHRVERSSGKFLRRFRLPDNVKVEQVKASMEYGVLTVTXXXXXXXXXXXKAIEISG 614
            + + FANARIDWKETP++HVFKADLPG++         EG +L ISG+RSKE+E+KNDKWHRVERSSG+F+RRFRLP+N KV+QVKA ME GVLTVT           KAIEISG
Sbjct:   36 DTAAFANARIDWKETPESHVFKADLPGVKKEEVKVEVEEGNVLVISGQRSKEKEDKNDKWHRVERSSGQFMRRFRLPENAKVDQVKAGMENGVLTVTVPKAEVKKPEVKAIEISG 150

[Close]

BLAST of CB304486 vs. ExPASy Swiss-Prot
Match: HS174_ORYSJ (17.4 kDa class I heat shock protein OS=Oryza sativa subsp. japonica GN=HSP17.4 PE=2 SV=2)

HSP 1 Score: 147.517 bits (371), Expect = 4.944e-35
Identity = 74/115 (64.35%), Postives = 86/115 (74.78%), Query Frame = -3

Query:  270 EISQFANARIDWKETPQAHVFKADLPGLRXXXXXXXXXEGRILQISGERSKEQEEKNDKWHRVERSSGKFLRRFRLPDNVKVEQVKASMEYGVLTVTXXXXXXXXXXXKAIEISG 614
            + + FA ARIDWKETP+AHVFKAD+PGL+         +G +LQISGER KEQEEK DKWHRVERSSGKFLRRFRLP+N K EQ+KASME GVLTVT           K+I+I+G
Sbjct:   40 DAAAFAGARIDWKETPEAHVFKADVPGLKKEEVKVEVEDGNVLQISGERIKEQEEKTDKWHRVERSSGKFLRRFRLPENTKPEQIKASMENGVLTVTVPKEEPKKPDVKSIQITG 154

The following BLAST results are available for this feature:

BLAST of CB304486 vs. ExPASy Swiss-Prot

BLAST of CB304486 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 54


Match Name	E-value	Identity	Description
HS17A_ORYSJ	3.424e-36	66.96	17.9 kDa class I heat shock protein OS=Oryza sativ...	[more]
HS181_ORYSJ	5.841e-36	65.22	18.1 kDa class I heat shock protein OS=Oryza sativ...	[more]
HSP11_DAUCA	1.699e-35	65.22	17.8 kDa class I heat shock protein OS=Daucus caro...	[more]
HS177_ORYSJ	1.699e-35	65.22	17.7 kDa class I heat shock protein OS=Oryza sativ...	[more]
HS16C_ORYSJ	1.699e-35	64.35	16.9 kDa class I heat shock protein 3 OS=Oryza sat...	[more]
HSP12_SOLPE	2.219e-35	66.09	17.6 kDa class I heat shock protein OS=Solanum per...	[more]
HSP11_SOLPE	2.899e-35	66.09	17.7 kDa class I heat shock protein OS=Solanum per...	[more]
HS17C_ARATH	2.899e-35	62.61	17.6 kDa class I heat shock protein 3 OS=Arabidops...	[more]
HS16B_ORYSJ	3.786e-35	64.35	16.9 kDa class I heat shock protein 2 OS=Oryza sat...	[more]
HS174_ORYSJ	4.944e-35	64.35	17.4 kDa class I heat shock protein OS=Oryza sativ...	[more]

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Properties


Property Name	Value
Genbank description	FLAVEDO0001_IIaR_E02 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0001_IIaR_E02 3, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>CB304486 ID=CB304486; Name=CB304486; organism=Citrus sinensis; type=EST; length=616bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTGCTCGCATTACAAAATATATT
TTATTGCATCACACTTTTATCATTTAAAAAACTAGTTACAACGCTTGAGA
CTGGCTCCTGAAGCTCTTGCAAACACACAAACATAATCACATCAAATTAA
ACAGGGGGGAAGGGAAGCTCTTGCAAACACACACACACACACACAAGGGC
TTTGCTTTCGTACCAAATTTATTAGCAAACCAAAGACACAATCTTGAAAA
CATTTACACTTATCACTTAGCCAGAGATCTCAATGGCCTTAACTTCAGGT
TTCTTCTCCTCCTGTTTAGGAACAGTCACTGTGAGCACACCATACTCCAT
GCTGGCCTTAACCTGCTCCACCTTAACATTGTCGGGCAACCTGAACCTCC
TCAGGAACTTGCCACTGCTCCTCTCGACGCGATGCCACTTGTCATTCTTC
TCTTCCTGCTCCTTGCTCCTCTCCCCGCTTATCTGCAGAATCCTGCCCTC
TTCAACCTCAACTTTCACTTCTTCTTTCCTCAGCCCTGGAAGATCAGCCT
TGAATACATGAGCCTGAGGAGTCTCTTTCCAGTCAATTCTTGCATTGGCG
AATTGGGATATTTCCC