CB304496

Overview
NameCB304496
Unique NameCB304496
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length590
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB304496 vs. ExPASy Swiss-Prot
Match: GEML5_ARATH (GEM-like protein 5 OS=Arabidopsis thaliana GN=At5g13200 PE=1 SV=1)

HSP 1 Score: 184.496 bits (467), Expect = 3.386e-46
Identity = 81/111 (72.97%), Postives = 102/111 (91.89%), Query Frame = -1
Query:  258 NEKLKKTFACYLSTTTGPVAGTLYLSTARVAFCSDRPLCFTAPSGQEAWSYYKVMIPLANISSVNPVTVKENASDKYMKIVTVEGHEFWFMGFVSFEKATNHLLNSLSEYR 590
            NE LKKTFACYLSTTTGPVAGT+YLS ARVAFCSDRPL FTAPSGQE+WSYY+V++PLAN+++VNPV VKE   +KY+++ TV+GH+FWFMGFV++EKAT+HLL S+S+++
Sbjct:  154 NETLKKTFACYLSTTTGPVAGTVYLSNARVAFCSDRPLYFTAPSGQESWSYYRVVVPLANVATVNPVVVKETPPEKYIQLTTVDGHDFWFMGFVNYEKATHHLLTSVSDFQ 264          
BLAST of CB304496 vs. ExPASy Swiss-Prot
Match: GEML1_ARATH (GEM-like protein 1 OS=Arabidopsis thaliana GN=FIP1 PE=1 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 1.210e-27
Identity = 54/110 (49.09%), Postives = 78/110 (70.91%), Query Frame = -1
Query:  261 NEKLKKTFACYLSTTTGPVAGTLYLSTARVAFCSDRPLCFTAPSGQEAWSYYKVMIPLANISSVNPVTVKENASDKYMKIVTVEGHEFWFMGFVSFEKATNHLLNSLSEY 590
            +EKL KT+ACYLST+ GPV G +YLST ++AF SD PL +     Q  WSYYKV++P   + +VNP T + N SDKY+++++++ HEFWFMGFV++E A   L  ++  +
Sbjct:  149 DEKLLKTYACYLSTSAGPVLGVMYLSTHKLAFSSDNPLSYKEGE-QTLWSYYKVVLPANQLKAVNPSTSRVNTSDKYIQVISIDNHEFWFMGFVTYESAVKSLQEAVQSH 257          
BLAST of CB304496 vs. ExPASy Swiss-Prot
Match: GEM_ARATH (GLABRA2 expression modulator OS=Arabidopsis thaliana GN=GEM PE=1 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 6.639e-26
Identity = 52/106 (49.06%), Postives = 77/106 (72.64%), Query Frame = -1
Query:  270 EKLKKTFACYLSTTTGPVAGTLYLSTARVAFCSDRPLCFTAPSGQEAWSYYKVMIPLANISSVNPVTVKENASDKYMKIVTVEGHEFWFMGFVSFEKATNHLLNSL 587
            E+L  +FACYLST+ GPV G LY+S+A++A+CSD PL +     Q  WSYYKV+IPL  + +VNP     N ++KY+++++V+ HEFWFMGF++++ A   L +SL
Sbjct:  187 EQLLNSFACYLSTSAGPVMGVLYISSAKLAYCSDNPLSYKN-GDQTEWSYYKVVIPLHQLKAVNPSASIVNPAEKYIQVISVDNHEFWFMGFLNYDGAVTSLQDSL 291          
BLAST of CB304496 vs. ExPASy Swiss-Prot
Match: GEML8_ARATH (Putative GEM-like protein 8 OS=Arabidopsis thaliana GN=At5g23370 PE=3 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 2.136e-24
Identity = 52/107 (48.60%), Postives = 74/107 (69.16%), Query Frame = -1
Query:  267 EKLKKTFACYLSTTTGPVAGTLYLSTARVAFCSDRPLCFTAPSGQEAWSYYKVMIPLANISSVNPVTVKENASDKYMKIVTVEGHEFWFMGFVSFEKATNHLLNSLS 587
            EKL K + CYLSTT GP+AG L++S+ ++AFCS+R +   +P G+    +YKV IPL  I+ VN        S KY+++VTV+G +FWFMGF+S++KA N L  +LS
Sbjct:  108 EKLFKAYQCYLSTTAGPIAGLLFISSKKIAFCSERSIKVASPQGELNRVHYKVSIPLCKINGVNQSQNTTKPSQKYLEVVTVDGFDFWFMGFLSYQKAFNCLEQALS 214          
BLAST of CB304496 vs. ExPASy Swiss-Prot
Match: GEML7_ARATH (GEM-like protein 7 OS=Arabidopsis thaliana GN=At5g23360 PE=2 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 4.758e-24
Identity = 51/108 (47.22%), Postives = 75/108 (69.44%), Query Frame = -1
Query:  264 EKLKKTFACYLSTTTGPVAGTLYLSTARVAFCSDRPLCFTAPSGQEAWSYYKVMIPLANISSVNPVTVKENASDKYMKIVTVEGHEFWFMGFVSFEKATNHLLNSLSE 587
            EKL K + CYLSTT G +AG L++S+ ++AFCS+R +  T+P G     +YKV IPL  I+ VN     +  S +Y+++VTV+ ++FWFMGFVS++KA N L  +L+E
Sbjct:  100 EKLFKAYQCYLSTTEGSIAGLLFISSKKIAFCSERSIKVTSPQGDLTRVHYKVSIPLCKINGVNQSQNTKKPSQRYLEVVTVDNYDFWFMGFVSYQKAFNCLEKALNE 207          
BLAST of CB304496 vs. ExPASy Swiss-Prot
Match: GEML6_ARATH (GEM-like protein 6 OS=Arabidopsis thaliana GN=At5g23350 PE=2 SV=2)

HSP 1 Score: 110.153 bits (274), Expect = 8.116e-24
Identity = 51/107 (47.66%), Postives = 74/107 (69.16%), Query Frame = -1
Query:  267 EKLKKTFACYLSTTTGPVAGTLYLSTARVAFCSDRPLCFTAPSGQEAWSYYKVMIPLANISSVNPVTVKENASDKYMKIVTVEGHEFWFMGFVSFEKATNHLLNSLS 587
            EKL K + CYLSTT GP+AG L++S+ ++AFCS+R +   +P G  +  +YKV IPL  I+ VN     +  S KY++IVT++  +FWFMGFVS++KA N L  +L+
Sbjct:  108 EKLFKAYQCYLSTTAGPIAGLLFISSKKIAFCSERSIKVASPQGVLSRVHYKVSIPLCKINGVNQSQNTKKPSQKYLEIVTIDNFDFWFMGFVSYQKAFNCLEKALN 214          
BLAST of CB304496 vs. ExPASy Swiss-Prot
Match: GEML4_ARATH (GEM-like protein 4 OS=Arabidopsis thaliana GN=At5g08350 PE=2 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 8.116e-24
Identity = 52/107 (48.60%), Postives = 73/107 (68.22%), Query Frame = -1
Query:  267 EKLKKTFACYLSTTTGPVAGTLYLSTARVAFCSDRPLCFTAPSGQEAWSYYKVMIPLANISSVNPVTVKENASDKYMKIVTVEGHEFWFMGFVSFEKATNHLLNSLS 587
            EKL K + CYLSTT GP+AG L++S+ ++AFCS+R +   +P G     +YKV IPL  I  VN     +  S KY+++VTV+G +FWFMGF+S++KA N L  +LS
Sbjct:  107 EKLFKMYQCYLSTTAGPIAGLLFISSKKMAFCSERSIKVDSPQGDIIRVHYKVSIPLCKIDRVNQSQNTKKPSQKYLEVVTVDGFDFWFMGFLSYQKAFNCLEKALS 213          
BLAST of CB304496 vs. ExPASy Swiss-Prot
Match: GEML3_ARATH (Putative GEM-like protein 3 OS=Arabidopsis thaliana GN=At4g40100 PE=3 SV=2)

HSP 1 Score: 98.2117 bits (243), Expect = 3.192e-20
Identity = 47/106 (44.34%), Postives = 70/106 (66.04%), Query Frame = -1
Query:  270 EKLKKTFACYLSTTTGPVAGTLYLSTARVAFCSDRPLCFTAPSGQEAWSYYKVMIPLANISSVNPVTVKENASDKYMKIVTVEGHEFWFMGFVSFEKATNHLLNSL 587
            E+L+ +FACYLST+ GPV G LY+STA++A+CSD  L               V+IPL  + SVNP     N ++KY+++++V+ HEFWFMGF+++E A   L ++L
Sbjct:  140 EQLQNSFACYLSTSAGPVMGVLYVSTAKLAYCSDTSL---------------VVIPLHQLKSVNPSISTVNPAEKYIQVISVDDHEFWFMGFLNYEGAVTSLQDTL 230          
BLAST of CB304496 vs. ExPASy Swiss-Prot
Match: GEML2_ARATH (GEM-like protein 2 OS=Arabidopsis thaliana GN=At4g01600 PE=2 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 2.702e-19
Identity = 49/111 (44.14%), Postives = 70/111 (63.06%), Query Frame = -1
Query:  258 EKLKKTFACYLSTTTGPVAGTLYLSTARVAFCSDRPLCF-TAPSGQEAWSYYKVMIPLANISSVNPVTVKENASDKYMKIVTVEGHEFWFMGFVSFEKATNHLLNSLSEYR 587
            EKL  +F CY+STT+GPV G +Y+S  R+AFCSD  +   ++  G    +YYKV++    ISS++  T     S++Y+ +VT +G EFWFMGFVS+  A N L  +L   R
Sbjct:  118 EKLLDSFVCYISTTSGPVTGVIYISNRRIAFCSDYAIRLPSSAGGNGVAAYYKVVMEWEKISSISSSTNVLKPSERYVHMVTRDGFEFWFMGFVSYIDAFNCLNKALLNSR 228          
The following BLAST results are available for this feature:
BLAST of CB304496 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 9
Match NameE-valueIdentityDescription
GEML5_ARATH3.386e-4672.97GEM-like protein 5 OS=Arabidopsis thaliana GN=At5g... [more]
GEML1_ARATH1.210e-2749.09GEM-like protein 1 OS=Arabidopsis thaliana GN=FIP1... [more]
GEM_ARATH6.639e-2649.06GLABRA2 expression modulator OS=Arabidopsis thalia... [more]
GEML8_ARATH2.136e-2448.60Putative GEM-like protein 8 OS=Arabidopsis thalian... [more]
GEML7_ARATH4.758e-2447.22GEM-like protein 7 OS=Arabidopsis thaliana GN=At5g... [more]
GEML6_ARATH8.116e-2447.66GEM-like protein 6 OS=Arabidopsis thaliana GN=At5g... [more]
GEML4_ARATH8.116e-2448.60GEM-like protein 4 OS=Arabidopsis thaliana GN=At5g... [more]
GEML3_ARATH3.192e-2044.34Putative GEM-like protein 3 OS=Arabidopsis thalian... [more]
GEML2_ARATH2.702e-1944.14GEM-like protein 2 OS=Arabidopsis thaliana GN=At4g... [more]
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Properties
Property NameValue
Genbank descriptionFLAVEDO0001_IIaR_F04 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0001_IIaR_F04 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB304496 ID=CB304496; Name=CB304496; organism=Citrus sinensis; type=EST; length=590bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCGAATTTAAAAATTTGATCT
TCCACACTTGAATATTGAAACACACAAGCGACCTGTGTTCAGATCTTTAC
ACACAAAATACCAAATCAATTACTGCTTTACAACCAAACCAACCTATAAA
TTCTCAAACTGAAAGAAACAACCAAAAGCAGAGCATACGAAAATTTTGAC
TCCAACAACCATTTTACACAGCTACTGGTCGCCCACTCGCCCTGCACTTC
CAGTTGCTCTGTATTCTGACAAACTGTTCAACAAGTGGTTCGTTGCTTTC
TCGAAACTGACAAAGCCCATGAACCAAAATTCATGTCCCTCCACAGTTAC
AATCTTCATGTACTTGTCTGATGCATTTTCTTTTACTGTCACTGGATTGA
CTGAGCTTATATTCGCCAAAGGTATCATAACCTTGTAGTAGCTCCAAGCT
TCCTGCCCAGATGGAGCAGTAAAACACAAGGGACGATCACTGCAGAAAGC
CACACGGGCTGTTGATAAATAGAGTGTTCCAGCAACAGGACCAGTTGTTG
TAGAAAGATAACACGCAAAGGTCTTCTTTAGCTTCTCATT
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