CB304506

Overview
NameCB304506
Unique NameCB304506
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length575
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1625 contig Csv1_Contig1625:828..1402. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CB304506 vs. ExPASy Swiss-Prot
Match: Y2766_ARATH (Uncharacterized protein At2g37660, chloroplastic OS=Arabidopsis thaliana GN=At2g37660 PE=1 SV=2)

HSP 1 Score: 206.453 bits (524), Expect = 7.832e-53
Identity = 100/110 (90.91%), Postives = 107/110 (97.27%), Query Frame = -1 
Query:  246 NSLGNGNILVWKRKAEQYLADSGIPYTIIRAGGLQDKEGGIRELLVGKDDELLQTETRTIARADVAEVCIQALQFEEAKFKAFDLASKPEGTGTPTKDFKALFSQITTRF 575
            NS+GN NILVWKRKAEQYLADSGIPYTIIRAGGLQDK+GGIRELLVGKDDELL+TETRTIARADVAEVC+QALQ EEAKFKA DLASKPEGTGTPTKDFKALF+Q+TT+F
Sbjct:  216 NSIGNANILVWKRKAEQYLADSGIPYTIIRAGGLQDKDGGIRELLVGKDDELLETETRTIARADVAEVCVQALQLEEAKFKALDLASKPEGTGTPTKDFKALFTQVTTKF 325
[Close]
BLAST of CB304506 vs. ExPASy Swiss-Prot
Match: Y5224_ARATH (Uncharacterized protein At5g02240 OS=Arabidopsis thaliana GN=At5g02240 PE=1 SV=1)

HSP 1 Score: 196.438 bits (498), Expect = 8.105e-50
Identity = 96/110 (87.27%), Postives = 102/110 (92.73%), Query Frame = -1 
Query:  246 NSLGNGNILVWKRKAEQYLADSGIPYTIIRAGGLQDKEGGIRELLVGKDDELLQTETRTIARADVAEVCIQALQFEEAKFKAFDLASKPEGTGTPTKDFKALFSQITTRF 575
            N LGNGNILVWKRKAEQYLADSG PYTIIRAGGL DKEGG+RELLVGKDDELLQT+T+T+ RADVAEVCIQAL FEEAK KAFDL SKPEGT TPTKDFKALFSQ+T+RF
Sbjct:  144 NKLGNGNILVWKRKAEQYLADSGTPYTIIRAGGLLDKEGGVRELLVGKDDELLQTDTKTVPRADVAEVCIQALLFEEAKNKAFDLGSKPEGTSTPTKDFKALFSQVTSRF 253
The following BLAST results are available for this feature:
BLAST of CB304506 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
Y2766_ARATH7.832e-5390.91Uncharacterized protein At2g37660, chloroplastic O... [more]
Y5224_ARATH8.105e-5087.27Uncharacterized protein At5g02240 OS=Arabidopsis t... [more]
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Properties
Property NameValue
Genbank descriptionFLAVEDO0001_IIaR_G10 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0001_IIaR_G10 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB304506 ID=CB304506; Name=CB304506; organism=Citrus sinensis; type=EST; length=575bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGTAAAGCACCGAATCCACTC
TATTCATCCATGTGAAAAGTTCCAATACCAATAGACAACTATCCAATGCA
AGTGCGGAGAATATCTTTCGCATAAAATTGTTTTACACCAGCTTTTAGAA
ATCTTCGGCATTCATTTATTCATTCCCCTTTTTAATACAAGGCATTACAG
TTTTCTAACATAAAAACTCAGGAGGAGAATGGCGACTGAGACTCAGAAAC
GAGTAGTAATTTGAGAAAAGAGAGCTTTAAAATCCTTTGTGGGTGTGCCA
GTTCCCTCAGGCTTTGAGGCCAGATCAAATGCCTTAAATTTGGCCTCCTC
AAACTGTAGTGCCTGAATGCAGACTTCGGCAACATCGGCCCTGGCAATTG
TCCTTGTTTCTGTCTGAAGAAGTTCATCATCCTTACCGACAAGCAATTCT
CGGATACCACCTTCTTTATCCTGAAGGCCTCCGGCCCTTATAATTGTGTA
TGGAATACCAGAGTCAGCCAAATACTGCTCAGCCTTTCTTTTCCAAACCA
ATATATTGCCATTGCCCAAACTGTT
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