CB304517

Overview
NameCB304517
Unique NameCB304517
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length575
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig696 contig Csv1_Contig696:400..974. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB304517 vs. ExPASy Swiss-Prot
Match: E134_MAIZE (Endo-1,3;1,4-beta-D-glucanase OS=Zea mays PE=1 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 3.932e-12
Identity = 35/90 (38.89%), Postives = 53/90 (58.89%), Query Frame = -1
Query:  306 EARPVIQALKSKGITAIGAAGFCWGAKVVVQLAKREFIQAAVLLHPSFVTVDDIKGVEVPLSILGAEIDRLSPPALVKEFEEALNAKSGV 575
            +A+P+  ALK +G  ++   G+CWG K+ V++ K   ++A  L HP  VT DD+K V+ P+ ILGA+ D  +PP  V  F   L  +  V
Sbjct:  131 DAKPLFAALKKEG-KSVAVGGYCWGGKLSVEVGKTSDVKAVCLSHPYSVTADDMKEVKWPIEILGAQNDTTTPPKEVYRFVHVLRERHEV 219          
BLAST of CB304517 vs. ExPASy Swiss-Prot
Match: CMBL_XENTR (Carboxymethylenebutenolidase homolog OS=Xenopus tropicalis GN=cmbl PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 8.760e-12
Identity = 49/137 (35.77%), Postives = 66/137 (48.18%), Query Frame = -1
Query:  174 EARPVIQALKSK-GITAIGAAGFCWGAKVVVQLA-KREFIQAAVLLHPSFVTVDDIKGVEVPLSILGAEIDRLSPPALVKEFEEALNAKSGVDSFVKIFPKVAHGWTVRYNVEDETAVKA-AEEAHHNLLEWFAKYV 575
            E   V++ LK +  +  IG  GFCWG  V   L  K   ++A V  +     V+D   +  P   + AE+D + P   V   EE L   S VD  VK+FPK  HG+  R N +     K   EEA  N+LEW  KY+
Sbjct:  109 EINVVLKYLKEQCHVKKIGVIGFCWGGVVTHHLMLKYPELKAGVSFYGIIRDVEDRYNLLNPTLFIFAEMDHVIPLEQVSLLEEKLKVHSKVDFQVKVFPKQTHGFVHRKNEDINPEDKPFIEEARKNMLEWLHKYI 245          
BLAST of CB304517 vs. ExPASy Swiss-Prot
Match: CMBL_XENLA (Carboxymethylenebutenolidase homolog OS=Xenopus laevis GN=cmbl PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 4.348e-11
Identity = 48/140 (34.29%), Postives = 68/140 (48.57%), Query Frame = -1
Query:  174 EARPVIQALKSK-GITAIGAAGFCWGAKVVVQLA-KREFIQAAVLLHPSFVTVDDIKGVEVPLSILGAEIDRLSPPALVKEFEEALNAKSGVDSFVKIFPKVAHGWTVR----YNVEDETAVKAAEEAHHNLLEWFAKYV 575
            E   V++ LK +  +  IG  GFCWG  V   L  K   ++A V  +     V+D   +  P   + AEID + P   V   E+ L   S VD  +K+FPK  HG+  R     N ED+  +   EEA  ++LEW  KY+
Sbjct:  109 EMNVVLKYLKEQCHVKKIGVIGFCWGGVVTHHLMLKYPELKAGVSFYGIIRDVEDRYNLLNPTLFIFAEIDHVIPLEQVSLLEQKLKVHSKVDFQIKVFPKQTHGFVHRKKEDINPEDKPFI---EEARKDMLEWLQKYI 245          
The following BLAST results are available for this feature:
BLAST of CB304517 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
E134_MAIZE3.932e-1238.89Endo-1,3;1,4-beta-D-glucanase OS=Zea mays PE=1 SV=... [more]
CMBL_XENTR8.760e-1235.77Carboxymethylenebutenolidase homolog OS=Xenopus tr... [more]
CMBL_XENLA4.348e-1134.29Carboxymethylenebutenolidase homolog OS=Xenopus la... [more]
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Properties
Property NameValue
Genbank descriptionFLAVEDO0001_IVaR_A04 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0001_IVaR_A04 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB304517 ID=CB304517; Name=CB304517; organism=Citrus sinensis; type=EST; length=575bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTCGTTCATCAGATATGCTTTTA
TTGAATTCGACATGAAAATCACACTCAATAAAAAGTCCGCATAGGTATTC
AATTATTCATACATGATAAATAGAGTTTCAAGTCTTCACACAACGAGCAC
TACTATTATCTATCCAGTTACTTGACATACTTGGCAAACCACTCCAGCAA
GTTGTGATGGGCTTCCTCTGCAGCCTTCACAGCAGTTTCATCTTCTACAT
TATATCTCACTGTCCATCCATGAGCCACTTTAGGAAATATTTTCACAAAG
CTATCAACCCCAGATTTGGCATTTAAGGCTTCTTCAAATTCCTTCACGAG
AGCTGGTGGAGACAAGCGATCAATTTCGGCTCCTAAAATTGAAAGGGGAA
CCTCAACCCCCTTGATATCATCTACAGTGACAAAAGAGGGATGTAACAGC
ACAGCAGCTTGGATGAACTCACGTTTTGCTAGTTGAACAACCACTTTAGC
GCCCCAGCAGAAGCCCGCAGCCCCAATTGCAGTTATACCTTTACTCTTAA
GAGCTTGAATAACTGGCCTTGCCTC
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