CB304532
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CB304532 vs. ExPASy Swiss-Prot
Match: U520_DROME (Putative U5 small nuclear ribonucleoprotein 200 kDa helicase OS=Drosophila melanogaster GN=CG5931 PE=2 SV=4) HSP 1 Score: 137.887 bits (346), Expect = 1.534e-32 Identity = 61/118 (51.69%), Postives = 93/118 (78.81%), Query Frame = -3 Query: 2 KSIETVFDLVEMEDDERRELLQMSDVQLLDIARFCNRFPNIDMSFEVQDSENVRAGEDITLQVVLERDLEGRTEVGPVYSNRYPKAKEEGWWLVVGDTKTNQLLAIKRVSLQRKSRVK 355 K IETVFD++E+ED++R LLQ+SD+Q+ D+ARFCNR+PNI++++EV D + + +G + + V LER+ E GPV + +P+ +EEGWW+V+GD KTN LL+IKR++LQ+K++VK Sbjct: 1981 KKIETVFDIMELEDEDRTRLLQLSDLQMADVARFCNRYPNIELNYEVVDKDRINSGSTVNVVVQLEREDE---VTGPVIAPFFPQKREEGWWVVIGDPKTNSLLSIKRLTLQQKAKVK 2095
BLAST of CB304532 vs. ExPASy Swiss-Prot
Match: U520_HUMAN (U5 small nuclear ribonucleoprotein 200 kDa helicase OS=Homo sapiens GN=SNRNP200 PE=1 SV=2) HSP 1 Score: 137.502 bits (345), Expect = 2.004e-32 Identity = 60/118 (50.85%), Postives = 94/118 (79.66%), Query Frame = -3 Query: 2 KSIETVFDLVEMEDDERRELLQMSDVQLLDIARFCNRFPNIDMSFEVQDSENVRAGEDITLQVVLERDLEGRTEVGPVYSNRYPKAKEEGWWLVVGDTKTNQLLAIKRVSLQRKSRVK 355 K +E+VFD++EMED+ER LLQ++D Q+ D+ARFCNR+PNI++S+EV D +++R+G + + V LER+ E GPV + +P+ +EEGWW+V+GD K+N L++IKR++LQ+K++VK Sbjct: 1977 KGVESVFDIMEMEDEERNALLQLTDSQIADVARFCNRYPNIELSYEVVDKDSIRSGGPVVVLVQLEREEE---VTGPVIAPLFPQKREEGWWVVIGDAKSNSLISIKRLTLQQKAKVK 2091
BLAST of CB304532 vs. ExPASy Swiss-Prot
Match: U520_CAEEL (Putative U5 small nuclear ribonucleoprotein 200 kDa helicase OS=Caenorhabditis elegans GN=Y46G5A.4 PE=3 SV=1) HSP 1 Score: 105.531 bits (262), Expect = 8.438e-23 Identity = 51/119 (42.86%), Postives = 85/119 (71.43%), Query Frame = -3 Query: 2 KSIETVFDLVEMEDDERRELLQMSDVQLLDIARFCNRFPNIDMSFEVQDSENVRAGEDITLQVVLERDLEGRTEVGPVYSNRYP-KAKEEGWWLVVGDTKTNQLLAIKRVSLQRKSRVK 355 K + +VF+L+E+E+D+R ++LQM +L D+ARFCN +P+I+++ E+ +++ V + +++ L V LERD + PV + +P K KEEGWWLV+GD+++N LL IKR+ + KS V+ Sbjct: 1976 KEVTSVFELLELENDDRSDILQMEGAELADVARFCNHYPSIEVATEL-ENDVVTSNDNLMLAVSLERDNDIDGLAPPVVAPLFPQKRKEEGWWLVIGDSESNALLTIKRLVINEKSSVQ 2093
BLAST of CB304532 vs. ExPASy Swiss-Prot
Match: HELCL_DICDI (Activating signal cointegrator 1 complex subunit 3-like OS=Dictyostelium discoideum GN=ascc3l PE=3 SV=1) HSP 1 Score: 100.523 bits (249), Expect = 2.714e-21 Identity = 50/127 (39.37%), Postives = 84/127 (66.14%), Query Frame = -3 Query: 2 KSIETVFDLVEMEDDERRELLQMSDVQLLDIARFCNRFPNIDMSFEVQDSENVRAGEDITLQVVLERDLEGRTEVGPVYSN---------RYPKAKEEGWWLVVGDTKTNQLLAIKRVSLQRKSRVK 355 + IE+VFDL+ ++D+ R +LL +S + D+ + ++P+ID+S++VQD +++ A +T+++V+ERDL G E P+ N YPK K GWW ++GD+K N LLAIKR++ +K++VK Sbjct: 2057 QGIESVFDLMSLDDNSRIQLLDLSQQESNDLVQSFMKYPDIDISYQVQDEDDLHADSIMTVEMVIERDL-GDDEENPIEINDSINVVSAPYYPKEKICGWWALIGDSKNNHLLAIKRITFLKKTKVK 2182
BLAST of CB304532 vs. ExPASy Swiss-Prot
Match: BRR2_SCHPO (Pre-mRNA-splicing factor brr2 OS=Schizosaccharomyces pombe GN=brr2 PE=1 SV=1) HSP 1 Score: 95.9005 bits (237), Expect = 6.685e-20 Identity = 50/119 (42.02%), Postives = 74/119 (62.18%), Query Frame = -3 Query: 2 KSIETVFDLVEMEDDERRELLQMSDVQLLDIARFCNRFPNIDMSFEVQDSENVRAGEDITLQVVLERDLEGRTEVG-PVYSNRYPKAKEEGWWLVVGDTKTNQLLAIKRVSLQRKSRVK 355 + + VFD+++++D++R ELL M + L A F N++P+ID+ FE++DSE+V A L V L R+LE EV V + +P K E WWLV+ D KT LLAIK+++L R K Sbjct: 2013 EGVHDVFDIIDLDDEKRTELLHMDNAHLAKCAEFINKYPDIDIDFEIEDSEDVHANSPSVLIVQLTRELEEDEEVDTTVIAPYFPAQKTEHWWLVISDDKT--LLAIKKITLGRSLTTK 2129
BLAST of CB304532 vs. ExPASy Swiss-Prot
Match: BRR2_YEAST (Pre-mRNA-splicing helicase BRR2 OS=Saccharomyces cerevisiae GN=BRR2 PE=1 SV=2) HSP 1 Score: 92.8189 bits (229), Expect = 5.660e-19 Identity = 42/115 (36.52%), Postives = 78/115 (67.83%), Query Frame = -3 Query: 8 SIETVFDLVEMEDDERRELLQMSDVQLLDIARFCNRFPNIDMSFEVQDSENVRAGEDITLQVVLERDLEGRTEVGPVYSNRYPKAKEEGWWLVVGDTKTNQLLAIKRVSLQRKSR 352 ++ETV+D++ +ED+ER E+L ++D QL +A F N +PN+++++ + +S+++ +G + + L RD+E E V S +YP K E WWLV+G+ +L AIK+V+L ++++ Sbjct: 2012 NVETVYDIMALEDEERDEILTLTDSQLAQVAAFVNNYPNVELTYSLNNSDSLISGVKQKITIQLTRDVE--PENLQVTSEKYPFDKLESWWLVLGEVSKKELYAIKKVTLNKETQ 2124 The following BLAST results are available for this feature:
BLAST of CB304532 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 6
Properties
Sequences
The
following sequences are available for this feature:
EST sequence >CB304532 ID=CB304532; Name=CB304532; organism=Citrus sinensis; type=EST; length=372bpback to top |