CB304542

Overview
NameCB304542
Unique NameCB304542
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length612
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig13741 contig Csv1_Contig13741:319..888. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB304542 vs. ExPASy Swiss-Prot
Match: R18A2_ARATH (60S ribosomal protein L18a-2 OS=Arabidopsis thaliana GN=RPL18AB PE=1 SV=2)

HSP 1 Score: 197.208 bits (500), Expect = 5.464e-50
Identity = 93/99 (93.94%), Postives = 96/99 (96.97%), Query Frame = -3
Query:  314 WLRYQSRTGYXNMYKEYRDTTLNGAVEQMYTEMASRHRVRSPCIQIIKTATIPAKLCKRESTKQFHNSKIKFPLVFRKVRPPSRKLRTTYKATRPNLFM 610
            WLRYQSRTGY NMYKEYRDTTLNGAVEQMYTEMASRHRVR PCIQIIKTAT+PAKLCKRESTKQFHNSKIKFPLVFRKVRPPSRKL+TTYKA +PNLFM
Sbjct:   80 WLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVRFPCIQIIKTATVPAKLCKRESTKQFHNSKIKFPLVFRKVRPPSRKLKTTYKANKPNLFM 178          
BLAST of CB304542 vs. ExPASy Swiss-Prot
Match: R18A3_ARATH (60S ribosomal protein L18a-3 OS=Arabidopsis thaliana GN=RPL18AC PE=2 SV=1)

HSP 1 Score: 193.741 bits (491), Expect = 6.041e-49
Identity = 91/99 (91.92%), Postives = 95/99 (95.96%), Query Frame = -3
Query:  314 WLRYQSRTGYXNMYKEYRDTTLNGAVEQMYTEMASRHRVRSPCIQIIKTATIPAKLCKRESTKQFHNSKIKFPLVFRKVRPPSRKLRTTYKATRPNLFM 610
            WLRYQSRTGY NMYKEYRDTTLNG VEQMYTEMASRHRVR PCIQIIKTAT+PAKLCKRE TKQFHNSKIKFPLVFRKVRPPSRKL+TTYKA++PNLFM
Sbjct:   80 WLRYQSRTGYHNMYKEYRDTTLNGGVEQMYTEMASRHRVRFPCIQIIKTATVPAKLCKREITKQFHNSKIKFPLVFRKVRPPSRKLKTTYKASKPNLFM 178          
BLAST of CB304542 vs. ExPASy Swiss-Prot
Match: RL18A_CASSA (60S ribosomal protein L18a OS=Castanea sativa GN=RPL18A PE=2 SV=1)

HSP 1 Score: 189.119 bits (479), Expect = 1.488e-47
Identity = 90/99 (90.91%), Postives = 94/99 (94.95%), Query Frame = -3
Query:  314 WLRYQSRTGYXNMYKEYRDTTLNGAVEQMYTEMASRHRVRSPCIQIIKTATIPAKLCKRESTKQFHNSKIKFPLVFRKVRPPSRKLRTTYKATRPNLFM 610
            WLRYQSRTGY NMYKEYRDTTLNGAVEQMY EMASRHRVR PCIQIIKTATIPAKLCKRES+KQFHNSKIKFPLV RK+RPPSRKL+T YKA+RPNLFM
Sbjct:   80 WLRYQSRTGYHNMYKEYRDTTLNGAVEQMYIEMASRHRVRFPCIQIIKTATIPAKLCKRESSKQFHNSKIKFPLVTRKIRPPSRKLKTHYKASRPNLFM 178          
BLAST of CB304542 vs. ExPASy Swiss-Prot
Match: RL18A_ORYSJ (60S ribosomal protein L18a OS=Oryza sativa subsp. japonica GN=RPL18A PE=2 SV=1)

HSP 1 Score: 182.185 bits (461), Expect = 1.819e-45
Identity = 85/99 (85.86%), Postives = 93/99 (93.94%), Query Frame = -3
Query:  314 WLRYQSRTGYXNMYKEYRDTTLNGAVEQMYTEMASRHRVRSPCIQIIKTATIPAKLCKRESTKQFHNSKIKFPLVFRKVRPPSRKLRTTYKATRPNLFM 610
            WLRYQSRTGY NMYKEYRDTTLNGAVEQMYTEMASRHRVR PCIQIIKTAT+  KLCKR++TKQFH S IKFPLV+RKVRPP+RKL+TT+KA+RPNLFM
Sbjct:   80 WLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVRFPCIQIIKTATVHFKLCKRDNTKQFHKSDIKFPLVYRKVRPPTRKLKTTFKASRPNLFM 178          
BLAST of CB304542 vs. ExPASy Swiss-Prot
Match: RL18A_DANRE (60S ribosomal protein L18a OS=Danio rerio GN=rpl18a PE=2 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 8.222e-22
Identity = 51/98 (52.04%), Postives = 65/98 (66.33%), Query Frame = -3
Query:  317 WLRYQSRTGYXNMYKEYRDTTLNGAVEQMYTEMASRHRVRSPCIQIIKTATIPAKLCKRESTKQFHNSKIKFPLVFRKVRPPSRKLRTTYKATRPNLF 610
            WLRY SR+G  NMY+EYRD T +GAV Q Y +M +RHR R+  IQI+K   I A  C+R + KQFH+SKIKFPL  R +R   R+ +  +   RPN F
Sbjct:   81 WLRYDSRSGTHNMYREYRDLTTSGAVTQCYRDMGARHRARAHAIQIMKVQVIAANKCRRPAIKQFHDSKIKFPLPHRVLR---RQHKPRFTTKRPNTF 175          
BLAST of CB304542 vs. ExPASy Swiss-Prot
Match: RL18A_HUMAN (60S ribosomal protein L18a OS=Homo sapiens GN=RPL18A PE=1 SV=2)

HSP 1 Score: 102.064 bits (253), Expect = 2.392e-21
Identity = 51/98 (52.04%), Postives = 64/98 (65.31%), Query Frame = -3
Query:  317 WLRYQSRTGYXNMYKEYRDTTLNGAVEQMYTEMASRHRVRSPCIQIIKTATIPAKLCKRESTKQFHNSKIKFPLVFRKVRPPSRKLRTTYKATRPNLF 610
            WLRY SR+G  NMY+EYRD T  GAV Q Y +M +RHR R+  IQI+K   I A  C+R + KQFH+SKIKFPL  R +R   R+ +  +   RPN F
Sbjct:   81 WLRYDSRSGTHNMYREYRDLTTAGAVTQCYRDMGARHRARAHSIQIMKVEEIAASKCRRPAVKQFHDSKIKFPLPHRVLR---RQHKPRFTTKRPNTF 175          
BLAST of CB304542 vs. ExPASy Swiss-Prot
Match: RL18A_BOVIN (60S ribosomal protein L18a OS=Bos taurus GN=RPL18A PE=2 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 2.392e-21
Identity = 51/98 (52.04%), Postives = 64/98 (65.31%), Query Frame = -3
Query:  317 WLRYQSRTGYXNMYKEYRDTTLNGAVEQMYTEMASRHRVRSPCIQIIKTATIPAKLCKRESTKQFHNSKIKFPLVFRKVRPPSRKLRTTYKATRPNLF 610
            WLRY SR+G  NMY+EYRD T  GAV Q Y +M +RHR R+  IQI+K   I A  C+R + KQFH+SKIKFPL  R +R   R+ +  +   RPN F
Sbjct:   81 WLRYDSRSGTHNMYREYRDLTTAGAVTQCYRDMGARHRARAHSIQIMKVEEIAASKCRRPAVKQFHDSKIKFPLPHRVLR---RQHKPRFTTKRPNTF 175          
BLAST of CB304542 vs. ExPASy Swiss-Prot
Match: RL18A_RAT (60S ribosomal protein L18a OS=Rattus norvegicus GN=Rpl18a PE=2 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 4.081e-21
Identity = 51/98 (52.04%), Postives = 64/98 (65.31%), Query Frame = -3
Query:  317 WLRYQSRTGYXNMYKEYRDTTLNGAVEQMYTEMASRHRVRSPCIQIIKTATIPAKLCKRESTKQFHNSKIKFPLVFRKVRPPSRKLRTTYKATRPNLF 610
            WLRY SR+G  NMY+EYRD T  GAV Q Y +M +RHR R+  IQI+K   I A  C+R + KQFH+SKIKFPL  R +R   R+ +  +   RPN F
Sbjct:   81 WLRYDSRSGTHNMYREYRDLTTAGAVTQCYRDMGARHRARAHSIQIMKVEEIAAGKCRRPAVKQFHDSKIKFPLPHRVLR---RQHKPRFTTKRPNTF 175          
BLAST of CB304542 vs. ExPASy Swiss-Prot
Match: RL18A_MOUSE (60S ribosomal protein L18a OS=Mus musculus GN=Rpl18a PE=1 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 4.081e-21
Identity = 51/98 (52.04%), Postives = 64/98 (65.31%), Query Frame = -3
Query:  317 WLRYQSRTGYXNMYKEYRDTTLNGAVEQMYTEMASRHRVRSPCIQIIKTATIPAKLCKRESTKQFHNSKIKFPLVFRKVRPPSRKLRTTYKATRPNLF 610
            WLRY SR+G  NMY+EYRD T  GAV Q Y +M +RHR R+  IQI+K   I A  C+R + KQFH+SKIKFPL  R +R   R+ +  +   RPN F
Sbjct:   81 WLRYDSRSGTHNMYREYRDLTTAGAVTQCYRDMGARHRARAHSIQIMKVEEIAAGKCRRPAVKQFHDSKIKFPLPHRVLR---RQHKPRFTTKRPNTF 175          
BLAST of CB304542 vs. ExPASy Swiss-Prot
Match: RL18A_ICTPU (60S ribosomal protein L18a OS=Ictalurus punctatus GN=rpl18a PE=2 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 4.081e-21
Identity = 50/98 (51.02%), Postives = 64/98 (65.31%), Query Frame = -3
Query:  317 WLRYQSRTGYXNMYKEYRDTTLNGAVEQMYTEMASRHRVRSPCIQIIKTATIPAKLCKRESTKQFHNSKIKFPLVFRKVRPPSRKLRTTYKATRPNLF 610
            WLRY SR+G  NMY+EYRD T +GAV Q Y +M +RHR R+  IQI+K   I A  C+R + KQFH+SKIKFPL  R +R   R+ +  +   RP  F
Sbjct:   81 WLRYDSRSGTHNMYREYRDLTTSGAVTQCYRDMGARHRARAHAIQIMKVQVIAANKCRRAAIKQFHDSKIKFPLPHRVLR---RQHKPRFTTRRPQTF 175          
The following BLAST results are available for this feature:
BLAST of CB304542 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 17
Match NameE-valueIdentityDescription
R18A2_ARATH5.464e-5093.9460S ribosomal protein L18a-2 OS=Arabidopsis thalia... [more]
R18A3_ARATH6.041e-4991.9260S ribosomal protein L18a-3 OS=Arabidopsis thalia... [more]
RL18A_CASSA1.488e-4790.9160S ribosomal protein L18a OS=Castanea sativa GN=R... [more]
RL18A_ORYSJ1.819e-4585.8660S ribosomal protein L18a OS=Oryza sativa subsp. ... [more]
RL18A_DANRE8.222e-2252.0460S ribosomal protein L18a OS=Danio rerio GN=rpl18... [more]
RL18A_HUMAN2.392e-2152.0460S ribosomal protein L18a OS=Homo sapiens GN=RPL1... [more]
RL18A_BOVIN2.392e-2152.0460S ribosomal protein L18a OS=Bos taurus GN=RPL18A... [more]
RL18A_RAT4.081e-2152.0460S ribosomal protein L18a OS=Rattus norvegicus GN... [more]
RL18A_MOUSE4.081e-2152.0460S ribosomal protein L18a OS=Mus musculus GN=Rpl1... [more]
RL18A_ICTPU4.081e-2151.0260S ribosomal protein L18a OS=Ictalurus punctatus ... [more]

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Properties
Property NameValue
Genbank descriptionFLAVEDO0001_IVaR_D05 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0001_IVaR_D05 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB304542 ID=CB304542; Name=CB304542; organism=Citrus sinensis; type=EST; length=612bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCTGGACAAGCACAAAAAATT
AAATTAAAAGGTAACCTAACTGGAAAACCAAACATTTAATAGCATCCAAT
AGCAACATAAACGGTAACAAAAACATAAATTTTGCAATCCCAAAGATCAG
GTTCGCTAGTCTCAACACCTAATATTCTCAACATAAAAACAGGTATCCGT
TGAACAAAAACAACTGACATAAAGGTAACTACCAAAAATATTCTTAAAAA
AATAAATAGATATCCACTGTTAAACCCTCTTGAAGTCTCAATTATCAAAG
GATAAAAGAGTTACATAAACAAGTTAGGCCTTGTTGCTTTGTATGTGGTC
CTCAGCTTCCTGCTTGGTGGTCTCACCTTCCTGAACACCAAGGGAAACTT
GATTTTTGAATTGTGGAACTGCTTGGTGCTTTCTCTCTTGCATAGCTTGG
CAGGGATGGTAGCAGTCTTGATAATTTGAATGCAAGGAGACCTGACCCTA
TGGCGAGAAGCCATCTCAGTGTACATCTGCTCCACAGCCCCGTTCAGAGT
GGTATCACGGTACTCCTTGTACATATTGNGATAACCAGTTCGACTCTGAT
AACGCAACCAGA
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