CB304543

Overview
NameCB304543
Unique NameCB304543
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length471
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig5271 contig Csv1_Contig5271:421..891. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB304543 vs. ExPASy Swiss-Prot
Match: LEA5_CITSI (Late embryogenesis abundant protein Lea5 OS=Citrus sinensis GN=LEA5 PE=2 SV=1)

HSP 1 Score: 178.333 bits (451), Expect = 1.451e-44
Identity = 89/91 (97.80%), Postives = 89/91 (97.80%), Query Frame = -1
Query:  199 KAKLLLAPVADGISLSIGRRGYAAAAPLGTISRTGIMEKNDLTPAVREDSGASSAWAPDPITGYYRPENRAVEIDPAELREMLLNHKVRAH 471
            KAKLLLAPVADGISLSI RRGYAAAAPLGTISRTGIMEKNDL PAVREDSGASSAWAPDPITGYYRPENRAVEIDPAELREMLLNHKVRAH
Sbjct:    7 KAKLLLAPVADGISLSISRRGYAAAAPLGTISRTGIMEKNDLRPAVREDSGASSAWAPDPITGYYRPENRAVEIDPAELREMLLNHKVRAH 97          
BLAST of CB304543 vs. ExPASy Swiss-Prot
Match: LEA5D_GOSHI (Late embryogenesis abundant protein Lea5-D OS=Gossypium hirsutum GN=LEA5-D PE=2 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 7.252e-20
Identity = 52/96 (54.17%), Postives = 64/96 (66.67%), Query Frame = -1
Query:  202 KLLLAPVADGISLSIGRRGYAAAAPLG---TISRTGIMEKNDLTPAVREDSGA-----SSAWAPDPITGYYRPENRAVEIDPAELREMLLNHKVRA 465
            KLL A + DG+ +SI RRGY+ A P     +  R G M K +   A++E S +     SSAWAPDP+TGYYRPEN   EID AELREMLLNH+VR+
Sbjct:    9 KLLGASIFDGLYVSISRRGYSGAPPAAVTASFGRPGAMGKVERRDAMKESSSSETRAYSSAWAPDPVTGYYRPENCGAEIDAAELREMLLNHRVRS 104          
BLAST of CB304543 vs. ExPASy Swiss-Prot
Match: LEA5A_GOSHI (Late embryogenesis abundant protein Lea5-A OS=Gossypium hirsutum GN=LEA5-A PE=2 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 5.197e-18
Identity = 49/96 (51.04%), Postives = 62/96 (64.58%), Query Frame = -1
Query:  202 KLLLAPVADGISLSIGRRGYAAAAPLG---TISRTGIMEKNDLTPAVREDSGA-----SSAWAPDPITGYYRPENRAVEIDPAELREMLLNHKVRA 465
            K L A V D + +SI RRGY+ A P     +  R G M K +   A++E S +     SSAWAPDP+TGYYRPEN   EID A+LREM+LNH+VR+
Sbjct:    9 KFLGASVFDALYVSISRRGYSGAPPAAVTASFGRPGAMGKVERRYAMKESSSSETRAYSSAWAPDPVTGYYRPENCGAEIDAADLREMMLNHRVRS 104          
The following BLAST results are available for this feature:
BLAST of CB304543 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
LEA5_CITSI1.451e-4497.80Late embryogenesis abundant protein Lea5 OS=Citrus... [more]
LEA5D_GOSHI7.252e-2054.17Late embryogenesis abundant protein Lea5-D OS=Goss... [more]
LEA5A_GOSHI5.197e-1851.04Late embryogenesis abundant protein Lea5-A OS=Goss... [more]
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Properties
Property NameValue
Genbank descriptionFLAVEDO0001_IVaR_D06 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0001_IVaR_D06 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB304543 ID=CB304543; Name=CB304543; organism=Citrus sinensis; type=EST; length=471bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCGGGACAAAATCATGGAAAT
GCACTATTAAAAGTTGTAAATAACAGTTGATATCAAAACAACAGCAAAGA
CTTTAGAGTGAGTCAAAATTGCTACTGTAACAACATCACTTAAAAGTTAA
AGCACCGCTAACAGCAAAGGATCTGCTGCTATGCGCGACCACTCCCTAGT
GTGCCCTGACTTTGTGGTTCAACAGCATCTCTCGAAGCTCTGCTGGATCA
ATCTCGACCGCCCGATTCTCCGGCCTGTAGTACCCAGTGATGGGATCTGG
GGCCCAGGCAGAAGAGGCCCCAGAATCCTCTCTCACCGCAGGCGTCAAAT
CATTTTTCTCCATGATACCAGTCCGAGATATGGTTCCCAAGGGTGCTGCT
GCAGCATATCCTCTCCTGCCAATGGAGAGCGAGATGCCATCAGCAACAGG
AGCAAGAAGAAGCTTAGCTTT
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