CB304548 | Citrus Genome Database

Overview


Name	CB304548
Unique Name	CB304548
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	380

Libraries


Library Name	Type
Flavedo Mature	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Alignments

Feature Name	Type	Location	Analysis
Csv1_Contig2146	contig	Csv1_Contig2146:360..739.	BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1

Homology

[Close]

BLAST of CB304548 vs. ExPASy Swiss-Prot
Match: SKP1B_ARATH (SKP1-like protein 1B OS=Arabidopsis thaliana GN=SKP1B PE=1 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 6.383e-26
Identity = 54/56 (96.43%), Postives = 56/56 (100.00%), Query Frame = -1

Query:  213 ANYLNIKGLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFSPDEEEEVRRENQWAFE 380
            ANYLNIKGLLDLTCQTVADMIKGKTPEEIRKTFNIKNDF+P+EEEEVRRENQWAFE
Sbjct:  116 ANYLNIKGLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE 171

[Close]

BLAST of CB304548 vs. ExPASy Swiss-Prot
Match: SKP1A_ARATH (SKP1-like protein 1A OS=Arabidopsis thaliana GN=SKP1A PE=1 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 1.572e-24
Identity = 52/56 (92.86%), Postives = 54/56 (96.43%), Query Frame = -1

Query:  213 ANYLNIKGLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFSPDEEEEVRRENQWAFE 380
            ANYLNIK LLDLTCQTVADMIKGKTPEEIR TFNIKNDF+P+EEEEVRRENQWAFE
Sbjct:  105 ANYLNIKNLLDLTCQTVADMIKGKTPEEIRTTFNIKNDFTPEEEEEVRRENQWAFE 160

[Close]

BLAST of CB304548 vs. ExPASy Swiss-Prot
Match: ASK11_ARATH (SKP1-like protein 11 OS=Arabidopsis thaliana GN=ASK11 PE=1 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 3.872e-23
Identity = 49/56 (87.50%), Postives = 53/56 (94.64%), Query Frame = -1

Query:  213 ANYLNIKGLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFSPDEEEEVRRENQWAFE 380
            ANYLNIK LLDLTCQTVADMIKGKTPEEIR TFNI+NDF+P+EEE VR+ENQWAFE
Sbjct:   97 ANYLNIKSLLDLTCQTVADMIKGKTPEEIRSTFNIENDFTPEEEEAVRKENQWAFE 152

[Close]

BLAST of CB304548 vs. ExPASy Swiss-Prot
Match: ASK12_ARATH (SKP1-like protein 12 OS=Arabidopsis thaliana GN=ASK12 PE=1 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 1.127e-22
Identity = 48/56 (85.71%), Postives = 52/56 (92.86%), Query Frame = -1

Query:  213 ANYLNIKGLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFSPDEEEEVRRENQWAFE 380
            ANYLNIK L DLTCQTVADMIKGKTPEEIR TFNI+NDF+P+EEE VR+ENQWAFE
Sbjct:   97 ANYLNIKSLFDLTCQTVADMIKGKTPEEIRSTFNIENDFTPEEEEAVRKENQWAFE 152

[Close]

BLAST of CB304548 vs. ExPASy Swiss-Prot
Match: SKP1_XENLA (S-phase kinase-associated protein 1 OS=Xenopus laevis GN=skp1 PE=1 SV=3)

HSP 1 Score: 96.6709 bits (239), Expect = 4.007e-20
Identity = 44/56 (78.57%), Postives = 52/56 (92.86%), Query Frame = -1

Query:  213 ANYLNIKGLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFSPDEEEEVRRENQWAFE 380
            ANYL+IKGLLD+TC+TVA+MIKGKTPEEIRKTFNIKNDF+ +EE +VR+ENQW  E
Sbjct:  107 ANYLDIKGLLDVTCKTVANMIKGKTPEEIRKTFNIKNDFTEEEEAQVRKENQWCEE 162

[Close]

BLAST of CB304548 vs. ExPASy Swiss-Prot
Match: SKP1_RAT (S-phase kinase-associated protein 1 OS=Rattus norvegicus GN=Skp1 PE=2 SV=3)

HSP 1 Score: 96.6709 bits (239), Expect = 4.007e-20
Identity = 44/56 (78.57%), Postives = 52/56 (92.86%), Query Frame = -1

Query:  213 ANYLNIKGLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFSPDEEEEVRRENQWAFE 380
            ANYL+IKGLLD+TC+TVA+MIKGKTPEEIRKTFNIKNDF+ +EE +VR+ENQW  E
Sbjct:  107 ANYLDIKGLLDVTCKTVANMIKGKTPEEIRKTFNIKNDFTEEEEAQVRKENQWCEE 162

[Close]

BLAST of CB304548 vs. ExPASy Swiss-Prot
Match: SKP1_PONAB (S-phase kinase-associated protein 1 OS=Pongo abelii GN=SKP1 PE=2 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 4.007e-20
Identity = 44/56 (78.57%), Postives = 52/56 (92.86%), Query Frame = -1

Query:  213 ANYLNIKGLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFSPDEEEEVRRENQWAFE 380
            ANYL+IKGLLD+TC+TVA+MIKGKTPEEIRKTFNIKNDF+ +EE +VR+ENQW  E
Sbjct:  107 ANYLDIKGLLDVTCKTVANMIKGKTPEEIRKTFNIKNDFTEEEEAQVRKENQWCEE 162

[Close]

BLAST of CB304548 vs. ExPASy Swiss-Prot
Match: SKP1_MOUSE (S-phase kinase-associated protein 1 OS=Mus musculus GN=Skp1 PE=1 SV=3)

HSP 1 Score: 96.6709 bits (239), Expect = 4.007e-20
Identity = 44/56 (78.57%), Postives = 52/56 (92.86%), Query Frame = -1

Query:  213 ANYLNIKGLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFSPDEEEEVRRENQWAFE 380
            ANYL+IKGLLD+TC+TVA+MIKGKTPEEIRKTFNIKNDF+ +EE +VR+ENQW  E
Sbjct:  107 ANYLDIKGLLDVTCKTVANMIKGKTPEEIRKTFNIKNDFTEEEEAQVRKENQWCEE 162

[Close]

BLAST of CB304548 vs. ExPASy Swiss-Prot
Match: SKP1_MACFA (S-phase kinase-associated protein 1 OS=Macaca fascicularis GN=SKP1 PE=2 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 4.007e-20
Identity = 44/56 (78.57%), Postives = 52/56 (92.86%), Query Frame = -1

Query:  213 ANYLNIKGLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFSPDEEEEVRRENQWAFE 380
            ANYL+IKGLLD+TC+TVA+MIKGKTPEEIRKTFNIKNDF+ +EE +VR+ENQW  E
Sbjct:  107 ANYLDIKGLLDVTCKTVANMIKGKTPEEIRKTFNIKNDFTEEEEAQVRKENQWCEE 162

[Close]

BLAST of CB304548 vs. ExPASy Swiss-Prot
Match: SKP1_HUMAN (S-phase kinase-associated protein 1 OS=Homo sapiens GN=SKP1 PE=1 SV=2)

HSP 1 Score: 96.6709 bits (239), Expect = 4.007e-20
Identity = 44/56 (78.57%), Postives = 52/56 (92.86%), Query Frame = -1

Query:  213 ANYLNIKGLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFSPDEEEEVRRENQWAFE 380
            ANYL+IKGLLD+TC+TVA+MIKGKTPEEIRKTFNIKNDF+ +EE +VR+ENQW  E
Sbjct:  107 ANYLDIKGLLDVTCKTVANMIKGKTPEEIRKTFNIKNDFTEEEEAQVRKENQWCEE 162

The following BLAST results are available for this feature:

BLAST of CB304548 vs. ExPASy Swiss-Prot

BLAST of CB304548 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 30


Match Name	E-value	Identity	Description
SKP1B_ARATH	6.383e-26	96.43	SKP1-like protein 1B OS=Arabidopsis thaliana GN=SK...	[more]
SKP1A_ARATH	1.572e-24	92.86	SKP1-like protein 1A OS=Arabidopsis thaliana GN=SK...	[more]
ASK11_ARATH	3.872e-23	87.50	SKP1-like protein 11 OS=Arabidopsis thaliana GN=AS...	[more]
ASK12_ARATH	1.127e-22	85.71	SKP1-like protein 12 OS=Arabidopsis thaliana GN=AS...	[more]
SKP1_XENLA	4.007e-20	78.57	S-phase kinase-associated protein 1 OS=Xenopus lae...	[more]
SKP1_RAT	4.007e-20	78.57	S-phase kinase-associated protein 1 OS=Rattus norv...	[more]
SKP1_PONAB	4.007e-20	78.57	S-phase kinase-associated protein 1 OS=Pongo abeli...	[more]
SKP1_MOUSE	4.007e-20	78.57	S-phase kinase-associated protein 1 OS=Mus musculu...	[more]
SKP1_MACFA	4.007e-20	78.57	S-phase kinase-associated protein 1 OS=Macaca fasc...	[more]
SKP1_HUMAN	4.007e-20	78.57	S-phase kinase-associated protein 1 OS=Homo sapien...	[more]

Pages

Properties


Property Name	Value
Genbank description	FLAVEDO0001_IVaR_D11 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0001_IVaR_D11 3, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>CB304548 ID=CB304548; Name=CB304548; organism=Citrus sinensis; type=EST; length=380bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAATGCAATAGACAAGGGTTC
AATGACATTTATATCGAGCAGCATTCACAGGTTCACGACAAAAGGAAATG
TTGATGTTCAATACTAAACACCTACTGGCAACATACTAAAAGACCACTAT
CATTATAACGACATTCCTATCACAAATATTAATGACCGAGCCTTCATCAC
TTCAGTCCTTCACTCGAATGCCCATTGGTTCTCTCTCCGAACCTCCTCTT
CTTCATCGGGAGAGAAGTCATTCTTGATGTTGAAGGTCTTGCGGATCTCC
TCTGGAGTCTTCCCCTTGATCATGTCTGCAACAGTTTGGCAGGTCAAGTC
CAGCAAACCCTTAATGTTCAGGTAATTGGC