CB304552

Overview
NameCB304552
Unique NameCB304552
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length455
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig12590 contig Csv1_Contig12590:434..888. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB304552 vs. ExPASy Swiss-Prot
Match: EXPA8_ARATH (Expansin-A8 OS=Arabidopsis thaliana GN=EXPA8 PE=2 SV=1)

HSP 1 Score: 234.572 bits (597), Expect = 1.542e-61
Identity = 106/126 (84.13%), Postives = 116/126 (92.06%), Query Frame = -2
Query:   80 NGGWCNPPLQHFDMAEPAFLQIAQYRAGIVPISFRRIPCAKKGGIRFTVNGHSYFNLVLVTNVGGAGDVHSVSIKGSKT-GWQAMSRNWGQNWQSNFYFNGQSLFFQVTASDGRTVTSNNVVPANW 454
            NGGWCNPPLQHFD+AEPAFLQIAQYRAGIVP+SFRR+PC KKGGIRFT+NGHSYFNLVL++NVGGAGDVH+VSIKGSKT  WQAMSRNWGQNWQSN Y N QSL FQVT SDGRT+ SN+V P+NW
Sbjct:  117 NGGWCNPPLQHFDLAEPAFLQIAQYRAGIVPVSFRRVPCMKKGGIRFTINGHSYFNLVLISNVGGAGDVHAVSIKGSKTQSWQAMSRNWGQNWQSNSYMNDQSLSFQVTTSDGRTLVSNDVAPSNW 242          
BLAST of CB304552 vs. ExPASy Swiss-Prot
Match: EXPA4_ORYSJ (Expansin-A4 OS=Oryza sativa subsp. japonica GN=EXPA4 PE=2 SV=1)

HSP 1 Score: 228.409 bits (581), Expect = 1.105e-59
Identity = 104/125 (83.20%), Postives = 111/125 (88.80%), Query Frame = -2
Query:   80 NGGWCNPPLQHFDMAEPAFLQIAQYRAGIVPISFRRIPCAKKGGIRFTVNGHSYFNLVLVTNVGGAGDVHSVSIKGSKTGWQAMSRNWGQNWQSNFYFNGQSLFFQVTASDGRTVTSNNVVPANW 454
            +GGWCNPP  HFDMAEPAFL IAQYRAGIVP+SFRR+PC KKGG+RFTVNGHSYFNLVLVTNV GAGDV SVSIKGS+TGWQ MSRNWGQNWQSN + +GQSL FQVTASDGRTVTSNNV    W
Sbjct:  111 DGGWCNPPRPHFDMAEPAFLHIAQYRAGIVPVSFRRVPCVKKGGVRFTVNGHSYFNLVLVTNVAGAGDVRSVSIKGSRTGWQPMSRNWGQNWQSNAFLDGQSLSFQVTASDGRTVTSNNVAHPGW 235          
BLAST of CB304552 vs. ExPASy Swiss-Prot
Match: EXPA4_ORYSI (Expansin-A4 OS=Oryza sativa subsp. indica GN=EXPA4 PE=2 SV=1)

HSP 1 Score: 228.409 bits (581), Expect = 1.105e-59
Identity = 104/125 (83.20%), Postives = 111/125 (88.80%), Query Frame = -2
Query:   80 NGGWCNPPLQHFDMAEPAFLQIAQYRAGIVPISFRRIPCAKKGGIRFTVNGHSYFNLVLVTNVGGAGDVHSVSIKGSKTGWQAMSRNWGQNWQSNFYFNGQSLFFQVTASDGRTVTSNNVVPANW 454
            +GGWCNPP  HFDMAEPAFL IAQYRAGIVP+SFRR+PC KKGG+RFTVNGHSYFNLVLVTNV GAGDV SVSIKGS+TGWQ MSRNWGQNWQSN + +GQSL FQVTASDGRTVTSNNV    W
Sbjct:  111 DGGWCNPPRPHFDMAEPAFLHIAQYRAGIVPVSFRRVPCVKKGGVRFTVNGHSYFNLVLVTNVAGAGDVRSVSIKGSRTGWQPMSRNWGQNWQSNAFLDGQSLSFQVTASDGRTVTSNNVAHPGW 235          
BLAST of CB304552 vs. ExPASy Swiss-Prot
Match: EXPA2_ORYSJ (Expansin-A2 OS=Oryza sativa subsp. japonica GN=EXPA2 PE=2 SV=2)

HSP 1 Score: 227.254 bits (578), Expect = 2.462e-59
Identity = 103/125 (82.40%), Postives = 109/125 (87.20%), Query Frame = -2
Query:   80 NGGWCNPPLQHFDMAEPAFLQIAQYRAGIVPISFRRIPCAKKGGIRFTVNGHSYFNLVLVTNVGGAGDVHSVSIKGSKTGWQAMSRNWGQNWQSNFYFNGQSLFFQVTASDGRTVTSNNVVPANW 454
            +GGWCNPP  HFDMAEPAFLQI  YRAGIVP+S+RR+PC KKGGIRFT+NGHSYFNLVLVTNV G GDV SVSIKGS TGWQ MSRNWGQNWQSN Y +GQSL FQV  SDGRTVTSNNVVPA W
Sbjct:  116 DGGWCNPPRPHFDMAEPAFLQIGVYRAGIVPVSYRRVPCVKKGGIRFTINGHSYFNLVLVTNVAGPGDVQSVSIKGSSTGWQPMSRNWGQNWQSNSYLDGQSLSFQVAVSDGRTVTSNNVVPAGW 240          
BLAST of CB304552 vs. ExPASy Swiss-Prot
Match: EXP10_ARATH (Expansin-A10 OS=Arabidopsis thaliana GN=EXPA10 PE=2 SV=1)

HSP 1 Score: 222.631 bits (566), Expect = 6.064e-58
Identity = 96/125 (76.80%), Postives = 111/125 (88.80%), Query Frame = -2
Query:   80 NGGWCNPPLQHFDMAEPAFLQIAQYRAGIVPISFRRIPCAKKGGIRFTVNGHSYFNLVLVTNVGGAGDVHSVSIKGSKTGWQAMSRNWGQNWQSNFYFNGQSLFFQVTASDGRTVTSNNVVPANW 454
            NGGWCNPPL+HFD+A+P F +IAQYRAGIVP+S+RR+PC ++GGIRFT+NGHSYFNLVL+TNVGGAGDVHS +IKGS+T WQAMSRNWGQNWQSN Y NGQ+L F+VT SDGRTV S N  PA W
Sbjct:  113 NGGWCNPPLEHFDLAQPVFQRIAQYRAGIVPVSYRRVPCRRRGGIRFTINGHSYFNLVLITNVGGAGDVHSAAIKGSRTVWQAMSRNWGQNWQSNSYLNGQALSFKVTTSDGRTVVSFNAAPAGW 237          
BLAST of CB304552 vs. ExPASy Swiss-Prot
Match: EXPA1_ARATH (Expansin-A1 OS=Arabidopsis thaliana GN=EXPA1 PE=2 SV=1)

HSP 1 Score: 220.32 bits (560), Expect = 3.009e-57
Identity = 93/124 (75.00%), Postives = 110/124 (88.71%), Query Frame = -2
Query:   80 GGWCNPPLQHFDMAEPAFLQIAQYRAGIVPISFRRIPCAKKGGIRFTVNGHSYFNLVLVTNVGGAGDVHSVSIKGSKTGWQAMSRNWGQNWQSNFYFNGQSLFFQVTASDGRTVTSNNVVPANW 451
            GGWCNPP QHFD+++P F +IAQYRAGIVP+++RR+PC ++GGIRFT+NGHSYFNLVL+TNVGGAGDVHS  +KGS+TGWQAMSRNWGQNWQSN Y NGQSL F+VT SDG+T+ SNNV  A W
Sbjct:  115 GGWCNPPQQHFDLSQPVFQRIAQYRAGIVPVAYRRVPCVRRGGIRFTINGHSYFNLVLITNVGGAGDVHSAMVKGSRTGWQAMSRNWGQNWQSNSYLNGQSLSFKVTTSDGQTIVSNNVANAGW 238          
BLAST of CB304552 vs. ExPASy Swiss-Prot
Match: EXP15_ARATH (Expansin-A15 OS=Arabidopsis thaliana GN=EXPA15 PE=2 SV=2)

HSP 1 Score: 219.935 bits (559), Expect = 3.930e-57
Identity = 93/124 (75.00%), Postives = 112/124 (90.32%), Query Frame = -2
Query:   80 GGWCNPPLQHFDMAEPAFLQIAQYRAGIVPISFRRIPCAKKGGIRFTVNGHSYFNLVLVTNVGGAGDVHSVSIKGSKTGWQAMSRNWGQNWQSNFYFNGQSLFFQVTASDGRTVTSNNVVPANW 451
            GGWCNPPL HFD+++P F +IAQY+AG+VP+S+RR+PC ++GGIRFT+NGHSYFNLVLVTNVGGAGDVHSV++KGS+T WQ MSRNWGQNWQSN   NGQ+L F+VTASDGRTV SNN+ PA+W
Sbjct:  118 GGWCNPPLHHFDLSQPVFQRIAQYKAGVVPVSYRRVPCMRRGGIRFTINGHSYFNLVLVTNVGGAGDVHSVAVKGSRTRWQQMSRNWGQNWQSNNLLNGQALSFKVTASDGRTVVSNNIAPASW 241          
BLAST of CB304552 vs. ExPASy Swiss-Prot
Match: EXPA2_ARATH (Expansin-A2 OS=Arabidopsis thaliana GN=EXPA2 PE=2 SV=2)

HSP 1 Score: 214.542 bits (545), Expect = 1.651e-55
Identity = 97/126 (76.98%), Postives = 112/126 (88.89%), Query Frame = -2
Query:   80 NGGWCNPPLQHFDMAEPAFLQIAQYRAGIVPISFRRIPCAKKGGIRFTVNGHSYFNLVLVTNVGGAGDVHSVSIKGSKTG-WQAMSRNWGQNWQSNFYFNGQSLFFQVTASDGRTVTSNNVVPANW 454
            NGGWCNPPL+HFD+AEPAFLQIAQYRAGIVP++FRR+PC K GGIRFT+NG+ YF+LVL+TNVGGAGD+ +VS+KGSKT  WQ+MSRNWGQNWQSN Y  GQSL FQVT SDGRTV S +VVP +W
Sbjct:  119 NGGWCNPPLKHFDLAEPAFLQIAQYRAGIVPVAFRRVPCEKGGGIRFTINGNPYFDLVLITNVGGAGDIRAVSLKGSKTDQWQSMSRNWGQNWQSNTYLRGQSLSFQVTDSDGRTVVSYDVVPHDW 244          
BLAST of CB304552 vs. ExPASy Swiss-Prot
Match: EXP14_ARATH (Expansin-A14 OS=Arabidopsis thaliana GN=EXPA14 PE=2 SV=1)

HSP 1 Score: 205.682 bits (522), Expect = 7.670e-53
Identity = 89/124 (71.77%), Postives = 105/124 (84.68%), Query Frame = -2
Query:   80 GGWCNPPLQHFDMAEPAFLQIAQYRAGIVPISFRRIPCAKKGGIRFTVNGHSYFNLVLVTNVGGAGDVHSVSIKGSKTGWQAMSRNWGQNWQSNFYFNGQSLFFQVTASDGRTVTSNNVVPANW 451
            GGWCNPP  HFD+A+P FL+IAQY+AG+VP+ +RR+ C +KGGIRFT+NGHSYFNLVL+TNV GAGDV SVSIKG+ T WQ+MSRNWGQNWQSN   +GQ+L F+VT SDGRTV SNN  P NW
Sbjct:  117 GGWCNPPQHHFDLAQPIFLRIAQYKAGVVPVQYRRVACRRKGGIRFTINGHSYFNLVLITNVAGAGDVISVSIKGTNTRWQSMSRNWGQNWQSNAKLDGQALSFKVTTSDGRTVISNNATPRNW 240          
BLAST of CB304552 vs. ExPASy Swiss-Prot
Match: EXPA4_ARATH (Expansin-A4 OS=Arabidopsis thaliana GN=EXPA4 PE=1 SV=1)

HSP 1 Score: 204.142 bits (518), Expect = 2.232e-52
Identity = 88/125 (70.40%), Postives = 106/125 (84.80%), Query Frame = -2
Query:   80 NGGWCNPPLQHFDMAEPAFLQIAQYRAGIVPISFRRIPCAKKGGIRFTVNGHSYFNLVLVTNVGGAGDVHSVSIKGSKTGWQAMSRNWGQNWQSNFYFNGQSLFFQVTASDGRTVTSNNVVPANW 454
            NGGWCNPP +HFD+A P FL+IAQYRAGIVP+S+RR+PC K+GGIRFT+NGH YFNLVL+TNV GAGD+   S+KGS+TGW ++SRNWGQNWQSN    GQ+L F+VT SD RT TS N+VP+NW
Sbjct:  120 NGGWCNPPREHFDLAMPVFLKIAQYRAGIVPVSYRRVPCRKRGGIRFTINGHRYFNLVLITNVAGAGDIVRASVKGSRTGWMSLSRNWGQNWQSNAVLVGQALSFRVTGSDRRTSTSWNMVPSNW 244          
The following BLAST results are available for this feature:
BLAST of CB304552 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 64
Match NameE-valueIdentityDescription
EXPA8_ARATH1.542e-6184.13Expansin-A8 OS=Arabidopsis thaliana GN=EXPA8 PE=2 ... [more]
EXPA4_ORYSJ1.105e-5983.20Expansin-A4 OS=Oryza sativa subsp. japonica GN=EXP... [more]
EXPA4_ORYSI1.105e-5983.20Expansin-A4 OS=Oryza sativa subsp. indica GN=EXPA4... [more]
EXPA2_ORYSJ2.462e-5982.40Expansin-A2 OS=Oryza sativa subsp. japonica GN=EXP... [more]
EXP10_ARATH6.064e-5876.80Expansin-A10 OS=Arabidopsis thaliana GN=EXPA10 PE=... [more]
EXPA1_ARATH3.009e-5775.00Expansin-A1 OS=Arabidopsis thaliana GN=EXPA1 PE=2 ... [more]
EXP15_ARATH3.930e-5775.00Expansin-A15 OS=Arabidopsis thaliana GN=EXPA15 PE=... [more]
EXPA2_ARATH1.651e-5576.98Expansin-A2 OS=Arabidopsis thaliana GN=EXPA2 PE=2 ... [more]
EXP14_ARATH7.670e-5371.77Expansin-A14 OS=Arabidopsis thaliana GN=EXPA14 PE=... [more]
EXPA4_ARATH2.232e-5270.40Expansin-A4 OS=Arabidopsis thaliana GN=EXPA4 PE=1 ... [more]

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Properties
Property NameValue
Genbank descriptionFLAVEDO0001_IVaR_E03 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0001_IVaR_E03 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB304552 ID=CB304552; Name=CB304552; organism=Citrus sinensis; type=EST; length=455bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGGAATCTTAAAATCTAAAAC
TGACCACCCTCAAAGGGTTGCCCAAATTGCCAATTTGCAGGCACAACATT
GTTGCTAGTCACAGTCCTGCCGTCACTGGCTGTCACTTGGAAAAAAAGAC
TTTGGCCGTTAAAATAAAAATTGCTCTGCCAATTTTGGCCCCAGTTCCTT
GACATTGCTTGCCATCCAGTCTTTGAACCCTTGATTGATACTGAATGTAC
ATCTCCTGCTCCTCCGACATTTGTGACCAAAACCAGGTTGAAGTATGAGT
GTCCATTGACGGTAAACCTTATTCCTCCTTTCTTCGCACACGGGATCCTT
CTGAAGGAAATTGGGACGATGCCGGCGCGGTATTGGGCAATTTGCAAAAA
AGCGGGCTCAGCCATGTCAAAGTGCTGGAGGGGAGGATTGCACCAACCGC
CGTTG
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