CB304566

Overview
NameCB304566
Unique NameCB304566
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length357
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB304566 vs. ExPASy Swiss-Prot
Match: AOC1_ARATH (Allene oxide cyclase 1, chloroplastic OS=Arabidopsis thaliana GN=AOC1 PE=1 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 1.121e-14
Identity = 40/61 (65.57%), Postives = 47/61 (77.05%), Query Frame = -1
Query:  142 QVKLKQLVFPFKLFYTFYLKGI-KDLPGELMGKPVRPSSFVHPSPMAKACKPGAPVANFTD 321
            QVKL+QLV+P KLFYTFYLKG+  DLP EL+G PV PS  V P+P AKA KP   V+NFT+
Sbjct:  194 QVKLQQLVYPTKLFYTFYLKGLANDLPLELIGTPVPPSKDVEPAPEAKALKPSGVVSNFTN 254          
BLAST of CB304566 vs. ExPASy Swiss-Prot
Match: AOC4_ARATH (Allene oxide cyclase 4, chloroplastic OS=Arabidopsis thaliana GN=AOC4 PE=2 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 4.261e-14
Identity = 39/61 (63.93%), Postives = 47/61 (77.05%), Query Frame = -1
Query:  142 QVKLKQLVFPFKLFYTFYLKGIK-DLPGELMGKPVRPSSFVHPSPMAKACKPGAPVANFTD 321
            QVKL+QLV+P KLFYTFYLKG+  DLP EL GK V PS  V P+  A+A +PGA +ANFT+
Sbjct:  194 QVKLRQLVYPTKLFYTFYLKGVAADLPVELTGKHVEPSKEVKPAAEAQATQPGATIANFTN 254          
BLAST of CB304566 vs. ExPASy Swiss-Prot
Match: AOC2_ARATH (Allene oxide cyclase 2, chloroplastic OS=Arabidopsis thaliana GN=AOC2 PE=1 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 2.115e-13
Identity = 36/61 (59.02%), Postives = 46/61 (75.41%), Query Frame = -1
Query:  142 QVKLKQLVFPFKLFYTFYLKGI-KDLPGELMGKPVRPSSFVHPSPMAKACKPGAPVANFTD 321
            QVKL+QLV+P KLFYTFYLKG+  DLP EL G PV PS  + P+P AKA +P   ++N+T+
Sbjct:  193 QVKLQQLVYPTKLFYTFYLKGLANDLPLELTGTPVPPSKDIEPAPEAKALEPSGVISNYTN 253          
BLAST of CB304566 vs. ExPASy Swiss-Prot
Match: AOC3_ARATH (Allene oxide cyclase 3, chloroplastic OS=Arabidopsis thaliana GN=AOC3 PE=2 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 4.711e-13
Identity = 37/61 (60.66%), Postives = 45/61 (73.77%), Query Frame = -1
Query:  142 QVKLKQLVFPFKLFYTFYLKGI-KDLPGELMGKPVRPSSFVHPSPMAKACKPGAPVANFTD 321
            QVKL+QLV+P KLFYTFYLKG+  DLP EL G  V PS  V P+P AKA +P   ++NFT+
Sbjct:  198 QVKLRQLVYPTKLFYTFYLKGLANDLPLELTGTAVTPSKDVKPAPEAKAMEPSGVISNFTN 258          
The following BLAST results are available for this feature:
BLAST of CB304566 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
AOC1_ARATH1.121e-1465.57Allene oxide cyclase 1, chloroplastic OS=Arabidops... [more]
AOC4_ARATH4.261e-1463.93Allene oxide cyclase 4, chloroplastic OS=Arabidops... [more]
AOC2_ARATH2.115e-1359.02Allene oxide cyclase 2, chloroplastic OS=Arabidops... [more]
AOC3_ARATH4.711e-1360.66Allene oxide cyclase 3, chloroplastic OS=Arabidops... [more]
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Properties
Property NameValue
Genbank descriptionFLAVEDO0001_IVaR_F09 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0001_IVaR_F09 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB304566 ID=CB304566; Name=CB304566; organism=Citrus sinensis; type=EST; length=357bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTGCAAGTCCAAAAGCATTTCCC
ATCCACTCAGAATAGATAAAAATTAAAGGCATACGTATGCTTTCTTAATC
ATCACACGCACTAATTAAATATTAATTGAAAATCCTAGTTAATCAGTAAA
ATTAGCAACGGGGGCACCAGGCTTACAAGCCTTAGCCATAGGGCTTGGGT
GAACAAAAGAGCTGGGCCTCACGGGCTTCCCCATAAGCTCTCCCGGCAGA
TCCTTAATGCCCTTCAAATAAAAAGTATAGAACAGCTTAAATGGAAACAC
AAGTTGCTTCAGCTTAACCTGCCCACTCACTCCTTCAAAGATCCCTGACC
CTCCACC
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