CB304567

Overview
NameCB304567
Unique NameCB304567
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length657
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2483 contig Csv1_Contig2483:158..782. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB304567 vs. ExPASy Swiss-Prot
Match: PRX2B_ARATH (Peroxiredoxin-2B OS=Arabidopsis thaliana GN=PRXIIB PE=1 SV=1)

HSP 1 Score: 248.44 bits (633), Expect = 2.371e-65
Identity = 120/148 (81.08%), Postives = 133/148 (89.86%), Query Frame = -2
Query:  210 LAYFDEQDQLQQVSVHSLAAGKKVILFGVPGAFTPTCSLKHVPGFIEKADELKSKDVDEILCISVNDPFVMKAWAKTFPENKSVKFLADGSAKYTHALGLELDLSEKGLGTRSRRFALMVDALKVKAANVESGGDFPVSSADDILKAL 653
            +++FDE DQLQ  SVHSLAAGKKVILFGVPGAFTPTCS+KHVPGFIEKA+ELKSK VDEI+C SVNDPFVMKAW KT+PENK VKF+ADGS +YTH LGLELDL +KGLG RSRRFAL++D LKV  ANVESGG+F VSSADDILKAL
Sbjct:   15 ISFFDENDQLQTASVHSLAAGKKVILFGVPGAFTPTCSMKHVPGFIEKAEELKSKGVDEIICFSVNDPFVMKAWGKTYPENKHVKFVADGSGEYTHLLGLELDLKDKGLGVRSRRFALLLDDLKVTVANVESGGEFTVSSADDILKAL 162          
BLAST of CB304567 vs. ExPASy Swiss-Prot
Match: PRX2C_ARATH (Peroxiredoxin-2C OS=Arabidopsis thaliana GN=PRXIIC PE=1 SV=1)

HSP 1 Score: 242.276 bits (617), Expect = 1.699e-63
Identity = 116/148 (78.38%), Postives = 132/148 (89.19%), Query Frame = -2
Query:  210 LAYFDEQDQLQQVSVHSLAAGKKVILFGVPGAFTPTCSLKHVPGFIEKADELKSKDVDEILCISVNDPFVMKAWAKTFPENKSVKFLADGSAKYTHALGLELDLSEKGLGTRSRRFALMVDALKVKAANVESGGDFPVSSADDILKAL 653
            +++FDE DQLQ VSVHS+AAGKKVILFGVPGAFTPTCS+ HVPGFI KA+ELKSK +DEI+C SVNDPFVMKAW KT+PENK VKF+ADGS +YTH LGLELDL +KGLG RSRRFAL++D LKV  ANVESGG+F VSSA+DILKAL
Sbjct:   15 ISFFDENDQLQTVSVHSIAAGKKVILFGVPGAFTPTCSMSHVPGFIGKAEELKSKGIDEIICFSVNDPFVMKAWGKTYPENKHVKFVADGSGEYTHLLGLELDLKDKGLGIRSRRFALLLDNLKVTVANVESGGEFTVSSAEDILKAL 162          
BLAST of CB304567 vs. ExPASy Swiss-Prot
Match: PRX2D_ARATH (Peroxiredoxin-2D OS=Arabidopsis thaliana GN=PRXIID PE=1 SV=2)

HSP 1 Score: 238.039 bits (606), Expect = 3.205e-62
Identity = 114/148 (77.03%), Postives = 131/148 (88.51%), Query Frame = -2
Query:  210 LAYFDEQDQLQQVSVHSLAAGKKVILFGVPGAFTPTCSLKHVPGFIEKADELKSKDVDEILCISVNDPFVMKAWAKTFPENKSVKFLADGSAKYTHALGLELDLSEKGLGTRSRRFALMVDALKVKAANVESGGDFPVSSADDILKAL 653
            +++FDE DQLQ VSVHS+AAGKKVILFGVPGAFTPTCS+ HVPGFI KA+ELKSK +DEI+C SVNDPFVMKAW KT+ ENK VKF+ADGS +YTH LGLELDL +KGLG RSRRFAL++D LKV  ANVE+GG+F VSSA+DILKAL
Sbjct:   15 ISFFDENDQLQTVSVHSIAAGKKVILFGVPGAFTPTCSMSHVPGFIGKAEELKSKGIDEIICFSVNDPFVMKAWGKTYQENKHVKFVADGSGEYTHLLGLELDLKDKGLGIRSRRFALLLDNLKVTVANVENGGEFTVSSAEDILKAL 162          
BLAST of CB304567 vs. ExPASy Swiss-Prot
Match: PRX2C_ORYSJ (Peroxiredoxin-2C OS=Oryza sativa subsp. japonica GN=PRXIIC PE=1 SV=1)

HSP 1 Score: 225.328 bits (573), Expect = 2.150e-58
Identity = 109/148 (73.65%), Postives = 127/148 (85.81%), Query Frame = -2
Query:  210 LAYFDEQDQLQQVSVHSLAAGKKVILFGVPGAFTPTCSLKHVPGFIEKADELKSKDVDEILCISVNDPFVMKAWAKTFPENKSVKFLADGSAKYTHALGLELDLSEKGLGTRSRRFALMVDALKVKAANVESGGDFPVSSADDILKAL 653
            L +FD +D+LQQVSVH LAAGKKV+LFGVPGAFTPTCS +HVPGFI +A++LK+K VD+IL +SVNDPFVMKAWAK++PENK VKFLADG   YT ALGLELDLSEKGLG RSRRFAL+ D LKV  AN+E GG F +S A++ILKAL
Sbjct:   15 LGWFDGEDKLQQVSVHGLAAGKKVVLFGVPGAFTPTCSNQHVPGFINQAEQLKAKGVDDILLVSVNDPFVMKAWAKSYPENKHVKFLADGLGTYTKALGLELDLSEKGLGIRSRRFALLADNLKVTVANIEEGGQFTISGAEEILKAL 162          
BLAST of CB304567 vs. ExPASy Swiss-Prot
Match: PRX2A_ARATH (Peroxiredoxin-2A OS=Arabidopsis thaliana GN=PRXIIA PE=1 SV=1)

HSP 1 Score: 175.252 bits (443), Expect = 2.551e-43
Identity = 88/135 (65.19%), Postives = 107/135 (79.26%), Query Frame = -2
Query:  249 LAYFDEQDQLQQVSVHSLAAGKKVILFGVPGAFTPTCSLKHVPGFIEKADELKSKDVDEILCISVNDPFVMKAWAKTFPENKSVKFLADGSAKYTHALGLELDLSEKGLGTRSRRFALMVDALKVKAANVESGGD 653
            +++FD+ DQLQ VSVHSLAAGKKVILFGVPGAF PTCS+ HV GFIEKA+ELKS  VDEI+C+S +DPF++ A +    ENK VKF+ DGS +Y   LGLEL++ +KGLG RSR FAL++D LKV   NV SGGD
Sbjct:   15 ISFFDDDDQLQTVSVHSLAAGKKVILFGVPGAFPPTCSMNHVNGFIEKAEELKSNGVDEIICLSGDDPFMITACS----ENKHVKFVEDGSGEYIQLLGLELEVKDKGLGVRSRGFALLLDNLKVIVVNVGSGGD 145          
BLAST of CB304567 vs. ExPASy Swiss-Prot
Match: PR2E1_ORYSJ (Peroxiredoxin-2E-1, chloroplastic OS=Oryza sativa subsp. japonica GN=PRXIIE-1 PE=2 SV=1)

HSP 1 Score: 165.622 bits (418), Expect = 2.021e-40
Identity = 83/151 (54.97%), Postives = 110/151 (72.85%), Query Frame = -2
Query:  210 LAYFDEQD-QLQQVSVHSLAAGKKVILFGVPGAFTPTCSLKHVPGFIEKADELKSKDVDEILCISVNDPFVMKAWAKTFPENKSVKFLADGSAKYTHALGLELDLSEK--GLGTRSRRFALMVDALKVKAANVESGGDFPVSSADDILKAL 653
            L+YFD  D +L+ V+V  L AGKKV+LF VPGAFTPTC+ KHVPGF+ KA EL++K VD + C+SVND FVM+AW ++      V  L+DG+ +   A+G+ELDLS+K  GLG RSRR+AL+ +   VK  N+E GG F  SSA+++LKAL
Sbjct:   82 LSYFDSPDGELKTVTVRDLTAGKKVVLFAVPGAFTPTCTQKHVPGFVAKAGELRAKGVDAVACVSVNDAFVMRAWKESLGVGDEVLLLSDGNGELARAMGVELDLSDKPAGLGVRSRRYALLAEDGVVKVLNLEEGGAFTTSSAEEMLKAL 232          
BLAST of CB304567 vs. ExPASy Swiss-Prot
Match: PRX2E_ARATH (Peroxiredoxin-2E, chloroplastic OS=Arabidopsis thaliana GN=PRXIIE PE=1 SV=2)

HSP 1 Score: 164.851 bits (416), Expect = 3.448e-40
Identity = 87/151 (57.62%), Postives = 107/151 (70.86%), Query Frame = -2
Query:  210 LAYFDEQD-QLQQVSVHSLAAGKKVILFGVPGAFTPTCSLKHVPGFIEKADELKSKDVDEILCISVNDPFVMKAWAKTFPENKSVKFLADGSAKYTHALGLELDLSEK--GLGTRSRRFALMVDALKVKAANVESGGDFPVSSADDILKAL 653
            L+Y D     ++ V+V SL AGKK ILF VPGAFTPTCS KHVPGF+ KA EL+SK +D I CISVND FVM+AW K    N  V  L+DG+ ++T  LG+ELDL +K  GLG RSRR+A++ D   VK  N+E GG F  SSA+D+LKAL
Sbjct:   84 LSYLDPSTGDVKTVTVSSLTAGKKTILFAVPGAFTPTCSQKHVPGFVSKAGELRSKGIDVIACISVNDAFVMEAWRKDLGINDEVMLLSDGNGEFTGKLGVELDLRDKPVGLGVRSRRYAILADDGVVKVLNLEEGGAFTNSSAEDMLKAL 234          
BLAST of CB304567 vs. ExPASy Swiss-Prot
Match: PR2E2_ORYSJ (Peroxiredoxin-2E-2, chloroplastic OS=Oryza sativa subsp. japonica GN=PRXIIE-2 PE=1 SV=1)

HSP 1 Score: 162.54 bits (410), Expect = 1.711e-39
Identity = 86/152 (56.58%), Postives = 111/152 (73.03%), Query Frame = -2
Query:  210 LAYFDEQD-QLQQVSVHSLAAGKKVILFGVPGAFTPTCSLKHVPGFIEKADELKSKDVDEILCISVNDPFVMKAWAKTFP-ENKSVKFLADGSAKYTHALGLELDLSEK--GLGTRSRRFALMVDALKVKAANVESGGDFPVSSADDILKAL 653
            L+YFD  D +L+ V+V  L AG+K +LF VPGAFTPTCS KH+PGFIEKA EL +K VD I C+SVND FVM+AW ++    +  V  L+DG+ + T ALG+E+DLS+K  GLG RSRR+AL+ D   VK  N+E GG F  SSA+++LKAL
Sbjct:   74 LSYFDPADGELKTVTVAELTAGRKAVLFAVPGAFTPTCSQKHLPGFIEKAGELHAKGVDAIACVSVNDAFVMRAWKESLGLGDADVLLLSDGNLELTRALGVEMDLSDKPMGLGVRSRRYALLADDGVVKVLNLEEGGAFTTSSAEEMLKAL 225          
BLAST of CB304567 vs. ExPASy Swiss-Prot
Match: PRX2F_ORYSJ (Peroxiredoxin-2F, mitochondrial OS=Oryza sativa subsp. japonica GN=PRXIIF PE=2 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 1.077e-25
Identity = 57/126 (45.24%), Postives = 81/126 (64.29%), Query Frame = -2
Query:  219 GKKVILFGVPGAFTPTCSLKHVPGFIEKADELKSKDVDEILCISVNDPFVMKAWAKTFPENKSVKFLADGSAKYTHALGLELDLSEKGLGTRSRRFALMVDALKVKAANVE-SGGDFPVSSADDIL 593
            GKKV++FG+PGA+T  CS  HVP +    D+LK+K VD ++C+SVNDP+ +  WA+      +++F  D    +  +L LE+DLS   LG RS R++  VD  K+KA NVE +  DF VS A+ IL
Sbjct:   70 GKKVVIFGLPGAYTGVCSQAHVPSYKNNIDKLKAKGVDSVICVSVNDPYALNGWAEKLQAKDAIEFYGDFDGSFHKSLDLEVDLSAALLGRRSHRWSAFVDDGKIKAFNVEVAPSDFKVSGAEVIL 195          
BLAST of CB304567 vs. ExPASy Swiss-Prot
Match: PRX2F_ARATH (Peroxiredoxin-2F, mitochondrial OS=Arabidopsis thaliana GN=PRXIIF PE=1 SV=2)

HSP 1 Score: 116.316 bits (290), Expect = 1.406e-25
Identity = 56/126 (44.44%), Postives = 81/126 (64.29%), Query Frame = -2
Query:  219 GKKVILFGVPGAFTPTCSLKHVPGFIEKADELKSKDVDEILCISVNDPFVMKAWAKTFPENKSVKFLADGSAKYTHALGLELDLSEKGLGTRSRRFALMVDALKVKAANVESG-GDFPVSSADDIL 593
            GKKV++FG+PGA+T  CS +HVP +    D+ K+K +D ++C+SVNDPF +  WA+      +++F  D   K+  +LGL+ DLS   LG RS R++  V+  KVKA NVE    DF V+ A+ IL
Sbjct:   73 GKKVVIFGLPGAYTGVCSQQHVPSYKSHIDKFKAKGIDSVICVSVNDPFAINGWAEKLGAKDAIEFYGDFDGKFHKSLGLDKDLSAALLGPRSERWSAYVEDGKVKAVNVEEAPSDFKVTGAEVIL 198          
The following BLAST results are available for this feature:
BLAST of CB304567 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 29
Match NameE-valueIdentityDescription
PRX2B_ARATH2.371e-6581.08Peroxiredoxin-2B OS=Arabidopsis thaliana GN=PRXIIB... [more]
PRX2C_ARATH1.699e-6378.38Peroxiredoxin-2C OS=Arabidopsis thaliana GN=PRXIIC... [more]
PRX2D_ARATH3.205e-6277.03Peroxiredoxin-2D OS=Arabidopsis thaliana GN=PRXIID... [more]
PRX2C_ORYSJ2.150e-5873.65Peroxiredoxin-2C OS=Oryza sativa subsp. japonica G... [more]
PRX2A_ARATH2.551e-4365.19Peroxiredoxin-2A OS=Arabidopsis thaliana GN=PRXIIA... [more]
PR2E1_ORYSJ2.021e-4054.97Peroxiredoxin-2E-1, chloroplastic OS=Oryza sativa ... [more]
PRX2E_ARATH3.448e-4057.62Peroxiredoxin-2E, chloroplastic OS=Arabidopsis tha... [more]
PR2E2_ORYSJ1.711e-3956.58Peroxiredoxin-2E-2, chloroplastic OS=Oryza sativa ... [more]
PRX2F_ORYSJ1.077e-2545.24Peroxiredoxin-2F, mitochondrial OS=Oryza sativa su... [more]
PRX2F_ARATH1.406e-2544.44Peroxiredoxin-2F, mitochondrial OS=Arabidopsis tha... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionFLAVEDO0001_IVaR_F10 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0001_IVaR_F10 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB304567 ID=CB304567; Name=CB304567; organism=Citrus sinensis; type=EST; length=657bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGCACAAAAACACACCCTTT
ATTCCGATAAAGATGAACAACAGTTTAAACAAAAGACTTCTCGCGTCATA
CATAACAATATTCGAGATCCACTGGTTTATATTCATCCTAAGCATAGCAC
AGCATAAGGAAGTAATAACTCAACCAACACTAAGCAGCTGGGATGGAACT
GCAAATTTAAAGAGCCTTGAGGATGTCATCAGCACTGGAGACTGGGAAAT
CTCCACCAGATTCAACATTTGCGGCCTTCACCTTGAGGGCATCAACCATG
AGAGCAAACCTCCTTGACCGGGTGCCAAGTCCTTTCTCACTGAGGTCAAG
CTCAAGCCCCAAAGCATGGGTGTATTTTGCTGAGCCATCAGCCAGGAACT
TCACGCTCTTGTTCTCAGGAAATGTTTTGGCCCATGCCTTCATCACAAAT
GGGTCATTAACGCTTATGCAGAGAATTTCATCGACGTCTTTTGACTTCAA
CTCATCAGCCTTCTCGATGAATCCAGGCACATGCTTCAAGCTGCAAGTAG
GAGTGAAAGCACCGGGGACGCCAAAGAGGATGACCTTTTTACCGGCAGCG
AGCGAGTGTACGGACACTTGCTGCAACTGATCTTGTTCGTCGAAGTAAGC
GAGAATA
back to top