CB304570

Overview
NameCB304570
Unique NameCB304570
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length573
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1951 contig Csv1_Contig1951:55..627. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB304570 vs. ExPASy Swiss-Prot
Match: QCR9_SOLTU (Cytochrome b-c1 complex subunit 9 OS=Solanum tuberosum PE=1 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 6.493e-23
Identity = 49/72 (68.06%), Postives = 58/72 (80.56%), Query Frame = -2
Query:  300 MEYTTKRSQGGLLEGLYRVIMRRNSIYVTFIIAGAFAGERAVDYGVRKIWEHNNVGKRYEDIPVLGQRQSEE 515
            ME   +RS GG+LEG YR++MRR  +YVTF+IAGA  GERAVDYGV+ +WE NNVGKRYEDI VLGQR  +E
Sbjct:    1 MESAARRSGGGVLEGFYRLVMRRTPVYVTFVIAGALLGERAVDYGVKTLWEKNNVGKRYEDISVLGQRPVDE 72          
The following BLAST results are available for this feature:
BLAST of CB304570 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
QCR9_SOLTU6.493e-2368.06Cytochrome b-c1 complex subunit 9 OS=Solanum tuber... [more]
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Properties
Property NameValue
Genbank descriptionFLAVEDO0001_IVaR_G04 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0001_IVaR_G04 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB304570 ID=CB304570; Name=CB304570; organism=Citrus sinensis; type=EST; length=573bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAGAAAACAAAATGGGATACA
ATTCAAATTAATGATCTATAAACTGAACAAGGGCAAGAACACGTTCTCGG
ACAAATAGTCGAAGCAATACGCAATTCACATCAATTCAATAGCTCCAAAA
CCTATTTGATTGAAACCAAGCTTGAAAAACACGTCTGATGCACTCAAGCA
TACAAAAAATTTATTGCAACATAAAACAGCTATCCATTACATTGGACGCC
CCTTCCAAATTTTTTATATAAAACTTCAGAATGAACAGGAGAGGTACTAC
TCTTCTGATTGCCTTTGCCCCAAAACTGGAATGTCTTCATATCGTTTCCC
GACATTGTTGTGCTCCCAGATTTTGCGAACCCCATAATCCACAGCCCGTT
CACCAGCGAAAGCACCGGCGATGATGAAGGTTACGTAGATGGAGTTGCGG
CGCATAATGACTCTGTAAAGACCTTCGAGGAGGCCTCCTTGGCTTCGTTT
GGTTGTATACTCCATGGCTGTTCGCTCAAGAATTCGAGTCGCTCTGATTG
ATCTGTAATACAGTGGTTGATTT
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