CB304578

Overview
NameCB304578
Unique NameCB304578
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length645
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1259 contig Csv1_Contig1259:403..1048. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of CB304578 vs. ExPASy Swiss-Prot
Match: FB60_ARATH (F-box protein At1g55000 OS=Arabidopsis thaliana GN=At1g55000 PE=1 SV=1)

HSP 1 Score: 170.629 bits (431), Expect = 6.106e-42
Identity = 88/132 (66.67%), Postives = 102/132 (77.27%), Query Frame = -1 
Query:  259 VKYSVQVMDIKRLNNMMSDHGIYSRERLLIPISSPELFIDGICYIEFDTYAKREVAVLYLEGAPEKK---PSCLLNRVTSVHGRRRIINSLRRSMQVDDETAQYYLFISNGNLRAALFEFFADLEWERQGAL 645
            VKY+VQVMDIKRLNNMMSDHGIYSR+RLLIPIS+PE+  +  CY+E D YAKREVAVLYLEGAP+++   P        S  G+RR+I SLRRSMQVDD TA YYL I+ G+ R+AL EF ADL WERQ  L
Sbjct:   89 VKYAVQVMDIKRLNNMMSDHGIYSRDRLLIPISNPEILANTTCYVELDKYAKREVAVLYLEGAPKREQPVPGTNQQSNLSADGKRRLIESLRRSMQVDDGTALYYLAIAEGDPRSALSEFSADLRWERQAGL 220
The following BLAST results are available for this feature:
BLAST of CB304578 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
FB60_ARATH6.106e-4266.67F-box protein At1g55000 OS=Arabidopsis thaliana GN... [more]
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Properties
Property NameValue
Genbank descriptionFLAVEDO0001_IVaR_H03 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0001_IVaR_H03 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB304578 ID=CB304578; Name=CB304578; organism=Citrus sinensis; type=EST; length=645bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTCGGGAGCCAAAGTGTATCACAT
TAACCTAAAAAATAATTACAATTTATCTTAAGACAACAATAAAAATACAG
AGAAGGAAACTGGAGTGAACAATTGACCACAATATTGAACCAACATCGGT
TGTAGACATGGTCTAGCTTATAATTGAATTCAAATATGAGCTCCATTGGG
AAGACAATAAATTAAGGAATTGAATTCCAAGCAGTACTTTTGTCAGTTTC
CTTCAAGCCAAAGCACCCTGCCTTTCCCATTCAAGGTCAGCAAAGAATTC
AAAGAGAGCAGCCCGCAGGTTACCATTGGAAATAAACAAGTAATATTGAG
CAGTTTCATCATCAACTTGCATGCTTCTCCTCAAGGAGTTGATTATCCTT
CTCCTGCCATGAACAGAGGTCACCCTGTTCAGCAAACAACTAGGCTTTTT
CTCAGGTGCACCTTCCAAATAGAGCACTGCTACTTCCCTTTTCGCATAGG
TGTCAAACTCTATGTAGCATATTCCATCTATAAAAAGTTCTGGACTGCTT
ATAGGGATCAATAACCTCTCCCTCGAATATATGCCATGATCACTCATCAT
ATTATTTAACCGTTTAATGTCCATAACCTGAACGGAGTACTTAAC
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