CB304580 | Citrus Genome Database

Overview


Name	CB304580
Unique Name	CB304580
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	210

Libraries


Library Name	Type
Flavedo Mature	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Homology

[Close]

BLAST of CB304580 vs. ExPASy Swiss-Prot
Match: YMF16_ARATH (Uncharacterized tatC-like protein ymf16 OS=Arabidopsis thaliana GN=YMF16 PE=2 SV=2)

HSP 1 Score: 95.9005 bits (237), Expect = 6.712e-20
Identity = 48/56 (85.71%), Postives = 48/56 (85.71%), Query Frame = -1

Query:   34 MVFSLFPAALSPPPDIWCQIVPCFFIYLIIELAIFVALIVQVLEEGWTSGMRESGS 201
            MVFSL  AAL  PPDIWCQIV CF I LIIELAIFVALIVQV EEGWTSGMRESGS
Sbjct:  206 MVFSLLTAALFTPPDIWCQIVACFLISLIIELAIFVALIVQVREEGWTSGMRESGS 261

The following BLAST results are available for this feature:

BLAST of CB304580 vs. ExPASy Swiss-Prot

BLAST of CB304580 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1


Match Name	E-value	Identity	Description
YMF16_ARATH	6.712e-20	85.71	Uncharacterized tatC-like protein ymf16 OS=Arabido...	[more]

Properties


Property Name	Value
Genbank description	FLAVEDO0001_IVaR_H06 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0001_IVaR_H06 3, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>CB304580 ID=CB304580; Name=CB304580; organism=Citrus sinensis; type=EST; length=210bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGCTCGAGCCGCTCTCCCTCA
TTCCACTCGTCCAGCCTTCTTCAAGAACTTGTACAATTAATGCCACAAAG
ATAGCCAACTCTATTATCAAATAAATAAAAAAACAGGGGACAATTTGGCA
CCAGATATCCGGAGGGGGGGAAAGAGCAGCTGGGAAAAGCGAAAAAACCA
TCCCCGGCCG