CB304581

Overview
NameCB304581
Unique NameCB304581
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length683
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB304581 vs. ExPASy Swiss-Prot
Match: RL25_RHOPT (50S ribosomal protein L25 OS=Rhodopseudomonas palustris (strain TIE-1) GN=rplY PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 7.754e-14
Identity = 39/124 (31.45%), Postives = 68/124 (54.84%), Query Frame = -1
Query:  309 EKVRVLPRKVHLPSGTDAPLNVTFLRAPPEALLKIDVPLVFRGDDVTPGLRKGGYLNTIKRTVKFLCPADIVPPYIDVDLSELDVEQKILAGDLKVHPALKLFRSKDEPVCKIAGGRVFDQKKS 680
            +K RV+PR  HL    D P++V FLR    A +++ VPL  +G +V PG+++GG  N +  TV+   PA+ +P +I+ D+S LD+   +   D+ +   +K     D  +  I     +++ K+
Sbjct:   71 KKHRVIPRDYHLDPVRDFPIHVDFLRLGAGATIRVSVPLHLKGLEVAPGVKRGGTFNIVTHTVELEAPAENIPQFIEADVSTLDIGVSLHLSDIALPTGVKSVSRDDVTLVTIVPPSGYNEDKA 194          
BLAST of CB304581 vs. ExPASy Swiss-Prot
Match: RL25_RHOPA (50S ribosomal protein L25 OS=Rhodopseudomonas palustris GN=rplY PE=1 SV=3)

HSP 1 Score: 77.411 bits (189), Expect = 7.754e-14
Identity = 39/124 (31.45%), Postives = 68/124 (54.84%), Query Frame = -1
Query:  309 EKVRVLPRKVHLPSGTDAPLNVTFLRAPPEALLKIDVPLVFRGDDVTPGLRKGGYLNTIKRTVKFLCPADIVPPYIDVDLSELDVEQKILAGDLKVHPALKLFRSKDEPVCKIAGGRVFDQKKS 680
            +K RV+PR  HL    D P++V FLR    A +++ VPL  +G +V PG+++GG  N +  TV+   PA+ +P +I+ D+S LD+   +   D+ +   +K     D  +  I     +++ K+
Sbjct:   71 KKHRVIPRDYHLDPVRDFPIHVDFLRLGAGATIRVSVPLHLKGLEVAPGVKRGGTFNIVTHTVELEAPAENIPQFIEADVSTLDIGVSLHLSDIALPTGVKSVSRDDVTLVTIVPPSGYNEDKA 194          
BLAST of CB304581 vs. ExPASy Swiss-Prot
Match: RL25_RHOP2 (50S ribosomal protein L25 OS=Rhodopseudomonas palustris (strain HaA2) GN=rplY PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 7.754e-14
Identity = 40/122 (32.79%), Postives = 66/122 (54.10%), Query Frame = -1
Query:  315 EKVRVLPRKVHLPSGTDAPLNVTFLRAPPEALLKIDVPLVFRGDDVTPGLRKGGYLNTIKRTVKFLCPADIVPPYIDVDLSELDVEQKILAGDLKVHPALKLFRSKDEPVCKIAGGRVFDQK 680
            +K RV+PR  HL    D P++V FLR    A ++I VPL  +G +  PG+++GG  N +  TV    PAD +P +I+ D+S LD+   +   D+ +   +K    +D  +  I     F+++
Sbjct:   71 QKHRVIPRDYHLDPVKDFPVHVDFLRLGEGATIRISVPLHLKGLESAPGVKRGGTFNIVTHTVDLEAPADAIPQFIEADVSTLDIGVSLHLSDIALPKGVKSVSREDVTLVTIVPPSGFNEE 192          
BLAST of CB304581 vs. ExPASy Swiss-Prot
Match: RL25_RHILO (50S ribosomal protein L25 OS=Rhizobium loti GN=rplY PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 7.754e-14
Identity = 37/116 (31.90%), Postives = 69/116 (59.48%), Query Frame = -1
Query:  336 EKVRVLPRKVHLPSGTDAPLNVTFLRAPPEALLKIDVPLVFRGDDVTPGLRKGGYLNTIKRTVKFLCPADIVPPYIDVDLSELDVEQKILAGDLKVHPALK-LFRSKDEPVCKIAG 680
            +K++VLP+   L    D P++V FLR   +  + +DVP+ F  +D +PG+++GG LN ++  V+F CPA+ +P +I +DL+  ++   I    +++   +K +   +D  +  IAG
Sbjct:   72 KKIQVLPKDFQLDPVKDFPVHVDFLRIGKDTEVNVDVPVHFINEDKSPGIKRGGVLNIVRHEVEFHCPANAIPEFITIDLTGTNIGDSIHISAVQLPAGVKPVISDRDFTIATIAG 187          
BLAST of CB304581 vs. ExPASy Swiss-Prot
Match: RL25_RHOPS (50S ribosomal protein L25 OS=Rhodopseudomonas palustris (strain BisB5) GN=rplY PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 3.848e-13
Identity = 38/123 (30.89%), Postives = 67/123 (54.47%), Query Frame = -1
Query:  312 EKVRVLPRKVHLPSGTDAPLNVTFLRAPPEALLKIDVPLVFRGDDVTPGLRKGGYLNTIKRTVKFLCPADIVPPYIDVDLSELDVEQKILAGDLKVHPALKLFRSKDEPVCKIAGGRVFDQKK 680
            +K RV+PR  HL    D P++V FLR    A +++ VPL  +G +  PG+++GG  N +  TV    PA+ +P +I+ D+S LD+   +   D+ +   +K    +D  +  I     F++++
Sbjct:   71 KKHRVIPRDYHLDPVKDFPIHVDFLRLGAGATIRVSVPLHLKGLESAPGVKRGGTFNIVTHTVDLEAPAESIPQFIEADVSTLDIGVSLHLSDIALPNGVKSVSREDVTLVTIVPPSGFNEEQ 193          
BLAST of CB304581 vs. ExPASy Swiss-Prot
Match: RL25_METSB (50S ribosomal protein L25 OS=Methylocella silvestris (strain BL2 / DSM 15510 / NCIMB 13906) GN=rplY PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 3.848e-13
Identity = 35/88 (39.77%), Postives = 53/88 (60.23%), Query Frame = -1
Query:  414 KVRVLPRKVHLPSGTDAPLNVTFLRAPPEALLKIDVPLVFRGDDVTPGLRKGGYLNTIKRTVKFLCPADIVPPYIDVDLSELDVEQKI 677
            K RV+PR   L    D PL+V FLR  P A LK++VP+ F   +  PG++KGG +N ++ +++   PAD +P  I  DL EL++   +
Sbjct:   72 KQRVIPRDYQLDPIKDLPLHVDFLRLKPGASLKVEVPVHFLNQETCPGVKKGGSVNIVRHSIELRVPADDIPEAITADLGELEINDSL 159          
BLAST of CB304581 vs. ExPASy Swiss-Prot
Match: RL25_MESSB (50S ribosomal protein L25 OS=Mesorhizobium sp. (strain BNC1) GN=rplY PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 3.848e-13
Identity = 33/96 (34.38%), Postives = 59/96 (61.46%), Query Frame = -1
Query:  393 EKVRVLPRKVHLPSGTDAPLNVTFLRAPPEALLKIDVPLVFRGDDVTPGLRKGGYLNTIKRTVKFLCPADIVPPYIDVDLSELDVEQKILAGDLKV 680
            EK++VLP+   L       ++V FLR     ++ ++VP+ F  D+  PG+++GG LN ++  V+F CPA+ +P +I+VDL+ LD+   +    +K+
Sbjct:   71 EKIQVLPKDYQLDPVRGFAMHVDFLRVGKNTVVTVNVPVHFINDEKAPGIKRGGVLNIVRHEVEFTCPANAIPDFIEVDLTGLDIGDSVHISAVKL 166          
BLAST of CB304581 vs. ExPASy Swiss-Prot
Match: RL25_RHOPB (50S ribosomal protein L25 OS=Rhodopseudomonas palustris (strain BisB18) GN=rplY PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 5.026e-13
Identity = 35/107 (32.71%), Postives = 62/107 (57.94%), Query Frame = -1
Query:  360 EKVRVLPRKVHLPSGTDAPLNVTFLRAPPEALLKIDVPLVFRGDDVTPGLRKGGYLNTIKRTVKFLCPADIVPPYIDVDLSELDVEQKILAGDLKVHPALKLFRSKD 680
            +K RV+PR  HL    D P++V FLR    AL+++ VPL  +  +  PG+++GG +N +  TV+    A+ +P +I+ D+S+LD+   +   D+ +   +K    +D
Sbjct:   71 QKHRVIPRDFHLDPVRDFPIHVDFLRLGEGALIRVSVPLHLKNAEGAPGVKRGGTVNIVTHTVELEAEAESIPQFIEADVSQLDIGSSLHLSDVVLPKGVKTLSRED 177          
BLAST of CB304581 vs. ExPASy Swiss-Prot
Match: RL25_NITWN (50S ribosomal protein L25 OS=Nitrobacter winogradskyi (strain Nb-255 / ATCC 25391) GN=rplY PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 5.026e-13
Identity = 34/107 (31.78%), Postives = 60/107 (56.07%), Query Frame = -1
Query:  360 EKVRVLPRKVHLPSGTDAPLNVTFLRAPPEALLKIDVPLVFRGDDVTPGLRKGGYLNTIKRTVKFLCPADIVPPYIDVDLSELDVEQKILAGDLKVHPALKLFRSKD 680
            +K RV+PR  HL    D P++V F+R    A +++ VPL     DV PG+++GG +N +   +   C A+ +P +I+ D+  L++   +   DL++ P +K    +D
Sbjct:   71 KKHRVIPRDFHLDPVKDFPIHVDFMRLGEGATIRVSVPLRLLKADVAPGVKRGGTVNLVTHAIDVECAAESIPQFIEADVGALEISHSLHLSDLQLPPGVKPLARED 177          
BLAST of CB304581 vs. ExPASy Swiss-Prot
Match: RL25_OLICO (50S ribosomal protein L25 OS=Oligotropha carboxidovorans (strain ATCC 49405 / DSM 1227 / OM5) GN=rplY PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 8.573e-13
Identity = 34/101 (33.66%), Postives = 61/101 (60.40%), Query Frame = -1
Query:  378 EKVRVLPRKVHLPSGTDAPLNVTFLRAPPEALLKIDVPLVFRGDDVTPGLRKGGYLNTIKRTVKFLCPADIVPPYIDVDLSELDVEQKILAGDLKVHPALK 680
            +K RV+PR   L    D PL+V FLR    A +++ VPL  +G +++PG+++GG +N +  TV+     D +P +I+VD+S+L++   +   D+ +   +K
Sbjct:   71 QKYRVIPRDYALDPVKDFPLHVDFLRLGEGATIRVSVPLHVKGAELSPGVKRGGTVNIVNHTVELEAEVDHIPQFIEVDVSKLEINNSVHLNDVALPKGVK 171          
The following BLAST results are available for this feature:
BLAST of CB304581 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 35
Match NameE-valueIdentityDescription
RL25_RHOPT7.754e-1431.4550S ribosomal protein L25 OS=Rhodopseudomonas palu... [more]
RL25_RHOPA7.754e-1431.4550S ribosomal protein L25 OS=Rhodopseudomonas palu... [more]
RL25_RHOP27.754e-1432.7950S ribosomal protein L25 OS=Rhodopseudomonas palu... [more]
RL25_RHILO7.754e-1431.9050S ribosomal protein L25 OS=Rhizobium loti GN=rpl... [more]
RL25_RHOPS3.848e-1330.8950S ribosomal protein L25 OS=Rhodopseudomonas palu... [more]
RL25_METSB3.848e-1339.7750S ribosomal protein L25 OS=Methylocella silvestr... [more]
RL25_MESSB3.848e-1334.3850S ribosomal protein L25 OS=Mesorhizobium sp. (st... [more]
RL25_RHOPB5.026e-1332.7150S ribosomal protein L25 OS=Rhodopseudomonas palu... [more]
RL25_NITWN5.026e-1331.7850S ribosomal protein L25 OS=Nitrobacter winograds... [more]
RL25_OLICO8.573e-1333.6650S ribosomal protein L25 OS=Oligotropha carboxido... [more]

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Properties
Property NameValue
Genbank descriptionFLAVEDO0001_IVaR_H07 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0001_IVaR_H07 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB304581 ID=CB304581; Name=CB304581; organism=Citrus sinensis; type=EST; length=683bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCGAAAGTAAAAAATAATCAC
TAACTGGATTAATGAGGTACACTCTTAATCGGAATCTGCTCCGCTTAACC
ACAAACCCACTGCAGCCTATTCAAATGGGATAAAAAAAAATGATGGTTGG
AGAGATAAAACTAAATTCGCAATTCCTAATCTGGTATTACAAAATTATGA
CTGTGTGATGAAAAAATGGGACCTCACATCTTCATATACTCATAGTCCGG
TTAAACCTGGAGATTGATTCATTAACCATAGTTTCAAGAATTGCTGAGGT
ACTTATTTTGATTTCTTTTGATCAAAAACCCTGCCTCCCGCAATCTTACA
GACAGGCTCGTCCTTTGACCGAAAAAGCTTTAATGCTGGATGAACCTTGA
GGTCTCCTGCTAAAATTTTCTGTTCCACATCCAACTCACTCAAATCGACA
TCAATATACGGAGGGACAATGTCTGCTGGACAAAGGAACTTAACAGTCCT
CTTGATAGTATTCAAATAACCCCCTTTTCTTAGACCAGGGGTCACATCAT
CTCCTCTAAAGACAAGTGGAACATCAATCTTCAGCAAAGCTTCTGGAGGT
GCCCTTAAGAAGGTCACATTAAGTGGTGCATCCGTGCCAGAAGGTAGATG
TACCTTTCTGGGCAGGACCCGGACTTTTTCAAT
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