CB304582

Overview
NameCB304582
Unique NameCB304582
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length391
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CB304582_ssr161 microsatellite CB304582_ssr161:161..172. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig13803 contig Csv1_Contig13803:247..637. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB304582 vs. ExPASy Swiss-Prot
Match: LTP1_MORNI (Non-specific lipid-transfer protein 1 OS=Morus nigra PE=1 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 7.730e-16
Identity = 36/55 (65.45%), Postives = 45/55 (81.82%), Query Frame = -3
Query:  225 AARTTPDRQAACNCLKRAYGTIRGIKPNVAAGLPSQCGVRIPYKISPSPDCFRVR 389
            AA+TT DRQAACNCLK A+ +I+G+  N+AAGLP +CGV +PYKISPS DC  V+
Sbjct:   37 AAKTTADRQAACNCLKSAFNSIKGLNLNLAAGLPGKCGVSVPYKISPSTDCKSVK 91          
BLAST of CB304582 vs. ExPASy Swiss-Prot
Match: NLTP_HELAN (Non-specific lipid-transfer protein OS=Helianthus annuus PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 1.116e-14
Identity = 35/55 (63.64%), Postives = 41/55 (74.55%), Query Frame = -3
Query:  225 AARTTPDRQAACNCLKRAYGTIRGIKPNVAAGLPSQCGVRIPYKISPSPDCFRVR 389
            AA+TTPDRQAAC CLK AY +I G+    AA  P +CGV IPYKISPS DC +V+
Sbjct:   62 AAKTTPDRQAACGCLKSAYNSISGVNAGNAASFPGKCGVSIPYKISPSTDCSKVQ 116          
BLAST of CB304582 vs. ExPASy Swiss-Prot
Match: NLTP1_PRUDU (Non-specific lipid-transfer protein 1 OS=Prunus dulcis PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 1.116e-14
Identity = 34/54 (62.96%), Postives = 42/54 (77.78%), Query Frame = -3
Query:  225 ARTTPDRQAACNCLKRAYGTIRGIKPNVAAGLPSQCGVRIPYKISPSPDCFRVR 386
            ARTTPDRQAACNCLK+   ++ G+ PN AA LP +CGV IPY+ISPS +C  V+
Sbjct:   64 ARTTPDRQAACNCLKQLSASVPGVNPNNAAALPGKCGVNIPYQISPSTNCANVK 117          
BLAST of CB304582 vs. ExPASy Swiss-Prot
Match: NLTP1_TOBAC (Non-specific lipid-transfer protein 1 OS=Nicotiana tabacum GN=LTP1 PE=1 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 3.248e-14
Identity = 37/55 (67.27%), Postives = 40/55 (72.73%), Query Frame = -3
Query:  225 AARTTPDRQAACNCLKRAYGTIRGIKPNVAAGLPSQCGVRIPYKISPSPDCFRVR 389
            +ARTT DRQ AC CLK A G I GI    AAGLPS CGV IPYKISPS DC +V+
Sbjct:   60 SARTTEDRQIACTCLKSAAGAISGINLGKAAGLPSTCGVNIPYKISPSTDCSKVQ 114          
BLAST of CB304582 vs. ExPASy Swiss-Prot
Match: NLTP_MALDO (Non-specific lipid-transfer protein OS=Malus domestica GN=MALD3 PE=1 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 4.242e-14
Identity = 34/54 (62.96%), Postives = 40/54 (74.07%), Query Frame = -3
Query:  225 ARTTPDRQAACNCLKRAYGTIRGIKPNVAAGLPSQCGVRIPYKISPSPDCFRVR 386
            ARTT DRQ ACNCLK   G+I G+ PN AAGLP +CGV +PYKIS S +C  V+
Sbjct:   62 ARTTADRQTACNCLKNLAGSISGVNPNNAAGLPGKCGVNVPYKISTSTNCATVK 115          
BLAST of CB304582 vs. ExPASy Swiss-Prot
Match: NLTP1_PRUPE (Non-specific lipid-transfer protein 1 OS=Prunus persica PE=1 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 4.242e-14
Identity = 34/54 (62.96%), Postives = 41/54 (75.93%), Query Frame = -3
Query:  225 ARTTPDRQAACNCLKRAYGTIRGIKPNVAAGLPSQCGVRIPYKISPSPDCFRVR 386
            ARTTPDRQAACNCLK+   ++ G+ PN AA LP +CGV IPYKIS S +C  V+
Sbjct:   38 ARTTPDRQAACNCLKQLSASVPGVNPNNAAALPGKCGVHIPYKISASTNCATVK 91          
BLAST of CB304582 vs. ExPASy Swiss-Prot
Match: NLTP1_PRUAR (Non-specific lipid-transfer protein 1 OS=Prunus armeniaca PE=1 SV=2)

HSP 1 Score: 76.6406 bits (187), Expect = 4.242e-14
Identity = 34/54 (62.96%), Postives = 41/54 (75.93%), Query Frame = -3
Query:  225 ARTTPDRQAACNCLKRAYGTIRGIKPNVAAGLPSQCGVRIPYKISPSPDCFRVR 386
            ARTTPDR+ ACNCLK+  G+I G+ PN AA LP +CGV IPYKIS S +C  V+
Sbjct:   38 ARTTPDRRTACNCLKQLSGSISGVNPNNAAALPGKCGVNIPYKISASTNCATVK 91          
BLAST of CB304582 vs. ExPASy Swiss-Prot
Match: NLTP1_PRUDO (Non-specific lipid-transfer protein 1 OS=Prunus domestica PE=1 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 2.105e-13
Identity = 33/54 (61.11%), Postives = 41/54 (75.93%), Query Frame = -3
Query:  225 ARTTPDRQAACNCLKRAYGTIRGIKPNVAAGLPSQCGVRIPYKISPSPDCFRVR 386
            ARTT DR+AACNCLK+  G+I G+ PN AA LP +CGV +PYKIS S +C  V+
Sbjct:   38 ARTTADRRAACNCLKQLSGSIPGVNPNNAAALPGKCGVNVPYKISASTNCATVK 91          
BLAST of CB304582 vs. ExPASy Swiss-Prot
Match: NLTP4_LENCU (Non-specific lipid-transfer protein 4 (Fragment) OS=Lens culinaris PE=1 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 3.591e-13
Identity = 35/55 (63.64%), Postives = 40/55 (72.73%), Query Frame = -3
Query:  225 AARTTPDRQAACNCLKRAYGTIRGIKPNVAAGLPSQCGVRIPYKISPSPDCFRVR 389
            AA TTPDRQAACNCLK A G+I  +  N AA LP +CGV IPYKIS S +C  V+
Sbjct:   55 AANTTPDRQAACNCLKSAAGSITKLNTNNAAALPGKCGVNIPYKISTSTNCNTVK 109          
BLAST of CB304582 vs. ExPASy Swiss-Prot
Match: NLTP_PYRCO (Non-specific lipid-transfer protein OS=Pyrus communis PE=1 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 4.690e-13
Identity = 31/54 (57.41%), Postives = 39/54 (72.22%), Query Frame = -3
Query:  225 ARTTPDRQAACNCLKRAYGTIRGIKPNVAAGLPSQCGVRIPYKISPSPDCFRVR 386
            A+TTPDRQAACNCLK   G++ G+ P  A  LP +CGV +PYKIS S +C  V+
Sbjct:   62 AKTTPDRQAACNCLKNLAGSVSGVNPGNAESLPGKCGVNVPYKISTSTNCATVK 115          
The following BLAST results are available for this feature:
BLAST of CB304582 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 40
Match NameE-valueIdentityDescription
LTP1_MORNI7.730e-1665.45Non-specific lipid-transfer protein 1 OS=Morus nig... [more]
NLTP_HELAN1.116e-1463.64Non-specific lipid-transfer protein OS=Helianthus ... [more]
NLTP1_PRUDU1.116e-1462.96Non-specific lipid-transfer protein 1 OS=Prunus du... [more]
NLTP1_TOBAC3.248e-1467.27Non-specific lipid-transfer protein 1 OS=Nicotiana... [more]
NLTP_MALDO4.242e-1462.96Non-specific lipid-transfer protein OS=Malus domes... [more]
NLTP1_PRUPE4.242e-1462.96Non-specific lipid-transfer protein 1 OS=Prunus pe... [more]
NLTP1_PRUAR4.242e-1462.96Non-specific lipid-transfer protein 1 OS=Prunus ar... [more]
NLTP1_PRUDO2.105e-1361.11Non-specific lipid-transfer protein 1 OS=Prunus do... [more]
NLTP4_LENCU3.591e-1363.64Non-specific lipid-transfer protein 4 (Fragment) O... [more]
NLTP_PYRCO4.690e-1357.41Non-specific lipid-transfer protein OS=Pyrus commu... [more]

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Properties
Property NameValue
Genbank descriptionFLAVEDO0001_IVaR_H08 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0001_IVaR_H08 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB304582 ID=CB304582; Name=CB304582; organism=Citrus sinensis; type=EST; length=391bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCCTCACTCAAAACACAGAT
CGCGTTTACATATTTAATATGACATAAAAAGCAAATATACAAACATGACA
TGAGAGGGAAACTCATACAAGGGGAGACTCGTTCGGACAAAGAAATTAAC
ATAAATATTCTTTATTTATTTATTCTTCTCAGTCAATCATACTTGGAAAG
TCACAGAGCTCAAACTCAACTTCACCTGACCCTAAAGCAGTCGGGGCTGG
GGCTGATCTTGTAAGGAATTCTGACTCCACATTGACTAGGAAGGCCAGCG
GCAACATTAGGTTTGATGCCGCGGATTGTTCCGTAAGCTCGTTTCAAGCA
GTTGCATGCAGCTTGGCGGTCAGGGGTGGTTCTGGCGGCGC
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