CB304586

Overview
NameCB304586
Unique NameCB304586
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length591
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig5066 contig Csv1_Contig5066:130..721. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB304586 vs. ExPASy Swiss-Prot
Match: CP74A_ARATH (Allene oxide synthase, chloroplastic OS=Arabidopsis thaliana GN=CYP74A PE=1 SV=3)

HSP 1 Score: 116.316 bits (290), Expect = 1.133e-25
Identity = 52/100 (52.00%), Postives = 72/100 (72.00%), Query Frame = -3
Query:  287 KGKEGFQLSSYDSVYDIKKGELLCGYQPLVMRDSKVFDDAESFKAERFMGEKGSELLSYLYWSNGPQTGTPNDMNKQCAGKDYVTLVACLIVAYVFQRYE 586
            + K+   + S+D+ + +K GE+L GYQPL  RD K+FD A+ F  ERF+GE+G +LL ++ WSNGP+T TP   NKQCAGKD+V LVA L V  +F+RY+
Sbjct:  394 RAKKDLVIESHDAAFKVKAGEMLYGYQPLATRDPKIFDRADEFVPERFVGEEGEKLLRHVLWSNGPETETPTVGNKQCAGKDFVVLVARLFVIEIFRRYD 493          
BLAST of CB304586 vs. ExPASy Swiss-Prot
Match: CP74_LINUS (Allene oxide synthase, chloroplastic OS=Linum usitatissimum GN=CYP74A PE=1 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 1.252e-24
Identity = 51/100 (51.00%), Postives = 72/100 (72.00%), Query Frame = -3
Query:  287 KGKEGFQLSSYDSVYDIKKGELLCGYQPLVMRDSKVFDDAESFKAERFMGEKGSELLSYLYWSNGPQTGTPNDMNKQCAGKDYVTLVACLIVAYVFQRYE 586
            K K+ F L S+++ Y +K+GE+L GYQP   +D K+FD  E F A+RF+GE G +L+ Y+ WSNGP+T TP+  NKQCAGKD+V + A L V  +F+RY+
Sbjct:  413 KAKKDFILESHEAAYQVKEGEMLFGYQPFATKDPKIFDRPEEFVADRFVGE-GVKLMEYVMWSNGPETETPSVANKQCAGKDFVVMAARLFVVELFKRYD 511          
BLAST of CB304586 vs. ExPASy Swiss-Prot
Match: C74A2_PARAR (Allene oxide synthase OS=Parthenium argentatum GN=CYP74A2 PE=1 SV=2)

HSP 1 Score: 110.923 bits (276), Expect = 4.758e-24
Identity = 49/100 (49.00%), Postives = 70/100 (70.00%), Query Frame = -3
Query:  287 KGKEGFQLSSYDSVYDIKKGELLCGYQPLVMRDSKVFDDAESFKAERFMGEKGSELLSYLYWSNGPQTGTPNDMNKQCAGKDYVTLVACLIVAYVFQRYE 586
            K K  F + S+D+ +++KKGE+L GYQP   +D KVFD  E +  +RF+G+ G  LL Y++WSNGP+T +P   NKQCAGKD+V L+  L V  +F+RY+
Sbjct:  350 KAKSNFTIESHDATFEVKKGEMLFGYQPFATKDPKVFDRPEEYVPDRFVGD-GEALLKYVWWSNGPETESPTVENKQCAGKDFVVLITRLFVIELFRRYD 448          
BLAST of CB304586 vs. ExPASy Swiss-Prot
Match: C74A4_ORYSJ (Allene oxide synthase 4 OS=Oryza sativa subsp. japonica GN=CYP74A4 PE=2 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 8.973e-23
Identity = 51/103 (49.51%), Postives = 70/103 (67.96%), Query Frame = -3
Query:  287 KGKEGFQLSSYDSVYDIKKGELLCGYQPLVMRDSKVFDDAESFKAERFMGEKGSE---LLSYLYWSNGPQTGTPNDMNKQCAGKDYVTLVACLIVAYVFQRYE 586
            + +    + S+D+ Y+++KGELL GYQPL  RD KVFD A  F  +RF+   GS    LL ++ WSNGP+TGTP++ NKQC GKD V  V  L+VA +F+RY+
Sbjct:  374 RARRDMVVESHDAAYEVRKGELLFGYQPLATRDEKVFDRAGEFVPDRFVSGAGSAARPLLEHVVWSNGPETGTPSEGNKQCPGKDMVVAVGRLMVAGLFRRYD 476          
BLAST of CB304586 vs. ExPASy Swiss-Prot
Match: C74A1_ORYSJ (Allene oxide synthase 1, chloroplastic OS=Oryza sativa subsp. japonica GN=CYP74A1 PE=2 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 4.453e-22
Identity = 49/123 (39.84%), Postives = 79/123 (64.23%), Query Frame = -3
Query:  242 KGKEGFQLSSYDSVYDIKKGELLCGYQPLVMRDSKVFDDAESFKAERFMGEKGSELLSYLYWSNGPQTGTPNDMNKQCAGKDYVTLVACLIVAYVFQRYEFI--------TGNSSSITAVEKA 586
            + K    + S+D  Y++++GE+L GYQP+  +D +VF   E +  +RF+GE G+ LL ++ WSNGP+T  P   +KQCAGKD+V LVA L++  +F RY+           G+S ++T+++KA
Sbjct:  388 RAKRDMVVESHDYGYEVREGEMLFGYQPMATKDPRVFARPEEYVPDRFLGEDGARLLRHVVWSNGPETAAPTLHDKQCAGKDFVVLVARLLLVELFLRYDSFDVEVGTSTLGSSVTVTSLKKA 510          
BLAST of CB304586 vs. ExPASy Swiss-Prot
Match: C74A2_ORYSJ (Allene oxide synthase 2 OS=Oryza sativa subsp. japonica GN=CYP74A2 PE=2 SV=2)

HSP 1 Score: 103.219 bits (256), Expect = 9.921e-22
Identity = 54/119 (45.38%), Postives = 74/119 (62.18%), Query Frame = -3
Query:  242 KGKEGFQLSSYDSVYDIKKGELLCGYQPLVMRDSKVFD-DAESFKAERFMGEKGSELLSYLYWSNGPQTGTPNDMNKQCAGKDYVTLVACLIVAYVFQRYEFIT---GNSSSITAVEKA 586
            + K   ++ S+D+ + IKKGE+L GYQP   RD +VF   A  F  +RF+GE+G +LL Y+YWSNG +T  P+  NKQC GK+ V LV  L++  +F RY+  T   G    IT V KA
Sbjct:  351 RAKADLEIESHDASFAIKKGEMLFGYQPCATRDPRVFGATAREFVGDRFVGEEGRKLLQYVYWSNGRETENPSVDNKQCPGKNLVVLVGRLLLVELFLRYDTFTAEAGKKVVITGVTKA 469          
BLAST of CB304586 vs. ExPASy Swiss-Prot
Match: C74A3_ORYSJ (Allene oxide synthase 3 OS=Oryza sativa subsp. japonica GN=CYP74A3 PE=2 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 8.399e-21
Identity = 49/96 (51.04%), Postives = 67/96 (69.79%), Query Frame = -3
Query:  287 LSSYDSVYDIKKGELLCGYQPLVMRDSKVFDDAESFKAERFM--GEKGSE-LLSYLYWSNGPQTGTPNDMNKQCAGKDYVTLVACLIVAYVFQRYE 565
            + S+D+ Y+++KGE+L GYQPL  RD KVFD A  F A+RF+  G  G   LL ++ WSNGP+T  P++ NKQC GKD V  V  L+VA +F+RY+
Sbjct:  379 VESHDAAYEVRKGEMLFGYQPLATRDEKVFDRAGEFVADRFVAGGAAGDRPLLEHVVWSNGPETRAPSEGNKQCPGKDMVVAVGRLMVAELFRRYD 474          
The following BLAST results are available for this feature:
BLAST of CB304586 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 7
Match NameE-valueIdentityDescription
CP74A_ARATH1.133e-2552.00Allene oxide synthase, chloroplastic OS=Arabidopsi... [more]
CP74_LINUS1.252e-2451.00Allene oxide synthase, chloroplastic OS=Linum usit... [more]
C74A2_PARAR4.758e-2449.00Allene oxide synthase OS=Parthenium argentatum GN=... [more]
C74A4_ORYSJ8.973e-2349.51Allene oxide synthase 4 OS=Oryza sativa subsp. jap... [more]
C74A1_ORYSJ4.453e-2239.84Allene oxide synthase 1, chloroplastic OS=Oryza sa... [more]
C74A2_ORYSJ9.921e-2245.38Allene oxide synthase 2 OS=Oryza sativa subsp. jap... [more]
C74A3_ORYSJ8.399e-2151.04Allene oxide synthase 3 OS=Oryza sativa subsp. jap... [more]
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Properties
Property NameValue
Genbank descriptionFLAVEDO0001_IaR_A03 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0001_IaR_A03 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB304586 ID=CB304586; Name=CB304586; organism=Citrus sinensis; type=EST; length=591bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTCCGCCATAAATATCATCCACG
AGACTTTTTTATTCATTCACCGGTTCGCTACTACTACATCCAAGGGAACC
GGGGGGACCCATCTCTACATAACTTTCTCTATCAACAACCAAACCAAACA
AACGTTACAACTCGACGTTACGTTCACGATCCATCACCGTCATACGACCC
CATTCACGTGATGATGCTCACGTTCAAAATCACCATCACTTGGCCTTTTC
AACGGCCGTGATCGAAGATGAGTTCCCAGTAATAAACTCGTACCTTTGGA
ACACATAAGCCACGATCAAACAAGCAACGAGAGTCACGTAATCCTTTCCG
GCACACTGCTTGTTCATGTCATTGGGAGTCCCCGTCTGTGGCCCATTTGA
CCAATACAAGTAACTCAACAACTCGCTCCCCTTTTCGCCCATAAACCTCT
CAGCCTTAAAACTCTCAGCATCGTCAAACACCTTCGAATCCCTCATGACC
AAAGGCTGATACCCGCAAAGCAACTCACCTTTCTTGATATCGTACACCGA
GTCGTACGAGCTCAGTTGGAATCCTTCCTTGCCCTTGCAAC
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