CB304600

Overview
NameCB304600
Unique NameCB304600
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length492
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig8536 contig Csv1_Contig8536:1..492. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB304600 vs. ExPASy Swiss-Prot
Match: RL3_ORYSJ (60S ribosomal protein L3 OS=Oryza sativa subsp. japonica GN=RPL3 PE=2 SV=2)

HSP 1 Score: 168.318 bits (425), Expect = 1.645e-41
Identity = 80/90 (88.89%), Postives = 85/90 (94.44%), Query Frame = -2
Query:  222 TEFDRTEKDITPMGGFPHYGVVNEDYLLIKGCCVGPKKRVVTLRQSLLKQTSRLALEGIKLKFIDTSSKFGHGRFQTTQEKAKYYGRLKA 491
            TEFDRTEKDITPMGGFPHYGVV  DYL+IKGCCVGPKKRVVTLRQSLLKQTSRLALE IKLKFIDTSSKFGHGRFQTT EK +++G+LKA
Sbjct:  300 TEFDRTEKDITPMGGFPHYGVVKGDYLMIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKLKFIDTSSKFGHGRFQTTDEKQRFFGKLKA 389          
BLAST of CB304600 vs. ExPASy Swiss-Prot
Match: RL32_ARATH (60S ribosomal protein L3-2 OS=Arabidopsis thaliana GN=ARP2 PE=2 SV=4)

HSP 1 Score: 160.229 bits (404), Expect = 4.480e-39
Identity = 74/87 (85.06%), Postives = 82/87 (94.25%), Query Frame = -2
Query:  231 TEFDRTEKDITPMGGFPHYGVVNEDYLLIKGCCVGPKKRVVTLRQSLLKQTSRLALEGIKLKFIDTSSKFGHGRFQTTQEKAKYYGR 491
            TE+DRTEKDITPMGGFPHYG+V EDYL+IKGCCVGPKKRVVTLRQ+LLKQTSRLA+E IKLKFID +S  GHGRFQT+QEKAK+YGR
Sbjct:  300 TEYDRTEKDITPMGGFPHYGIVKEDYLMIKGCCVGPKKRVVTLRQTLLKQTSRLAMEEIKLKFIDAASNGGHGRFQTSQEKAKFYGR 386          
BLAST of CB304600 vs. ExPASy Swiss-Prot
Match: RL31_ARATH (60S ribosomal protein L3-1 OS=Arabidopsis thaliana GN=ARP1 PE=2 SV=5)

HSP 1 Score: 154.836 bits (390), Expect = 1.882e-37
Identity = 71/88 (80.68%), Postives = 81/88 (92.05%), Query Frame = -2
Query:  228 TEFDRTEKDITPMGGFPHYGVVNEDYLLIKGCCVGPKKRVVTLRQSLLKQTSRLALEGIKLKFIDTSSKFGHGRFQTTQEKAKYYGRL 491
            TE+DRTEKD+TPMGGFPHYG+V +DYL+IKGCCVGPKKRVVTLRQSLL QTSRLALE IKLKFIDT+S FGHGRFQT+ EK ++Y R+
Sbjct:  300 TEYDRTEKDVTPMGGFPHYGIVKDDYLMIKGCCVGPKKRVVTLRQSLLTQTSRLALEEIKLKFIDTASIFGHGRFQTSLEKMRFYNRV 387          
BLAST of CB304600 vs. ExPASy Swiss-Prot
Match: RL3_DROME (60S ribosomal protein L3 OS=Drosophila melanogaster GN=RpL3 PE=1 SV=3)

HSP 1 Score: 135.576 bits (340), Expect = 1.182e-31
Identity = 62/89 (69.66%), Postives = 73/89 (82.02%), Query Frame = -2
Query:  225 TEFDRTEKDITPMGGFPHYGVVNEDYLLIKGCCVGPKKRVVTLRQSLLKQTSRLALEGIKLKFIDTSSKFGHGRFQTTQEKAKYYGRLK 491
            TE+D T+K ITPMGGFPHYG VN D+++IKGCC+G KKR++TLR+SLLK T R ALE IKLKFIDTSSK GHGRFQT  +K  + G LK
Sbjct:  305 TEYDLTDKSITPMGGFPHYGEVNNDFVMIKGCCIGSKKRIITLRKSLLKHTKRSALEQIKLKFIDTSSKMGHGRFQTPADKLAFMGPLK 393          
BLAST of CB304600 vs. ExPASy Swiss-Prot
Match: RL3_TOXCA (60S ribosomal protein L3 OS=Toxocara canis GN=RPL3 PE=2 SV=2)

HSP 1 Score: 129.413 bits (324), Expect = 8.469e-30
Identity = 58/89 (65.17%), Postives = 73/89 (82.02%), Query Frame = -2
Query:  225 TEFDRTEKDITPMGGFPHYGVVNEDYLLIKGCCVGPKKRVVTLRQSLLKQTSRLALEGIKLKFIDTSSKFGHGRFQTTQEKAKYYGRLK 491
            T++D TEK + PMGGFPHYG+VN+D+++I+GCCVG KKR +TLR+SL+ QT R A E I LK+IDTSSKFGHGRFQT  EK  + G+LK
Sbjct:  302 TDYDITEKSVNPMGGFPHYGLVNQDFVMIRGCCVGSKKRPITLRKSLIVQTKRFAHEKINLKWIDTSSKFGHGRFQTHAEKRAFMGKLK 390          
BLAST of CB304600 vs. ExPASy Swiss-Prot
Match: RL3_CAEEL (60S ribosomal protein L3 OS=Caenorhabditis elegans GN=rpl-3 PE=1 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 1.887e-29
Identity = 59/92 (64.13%), Postives = 75/92 (81.52%), Query Frame = -2
Query:  216 TEFDRTEKDITPMGGFPHYGVVNEDYLLIKGCCVGPKKRVVTLRQSLLKQTSRLALEGIKLKFIDTSSKFGHGRFQTTQEKAKYYGRLKA*F 491
            TEFD T+K ITPMGGFP YG+VN+DY++++G  +GPKKR++TLR+SL+ QT R+A E I LK+IDTSSK GHGRFQTT EK  + G+LK  F
Sbjct:  302 TEFDLTQKTITPMGGFPRYGIVNQDYIMLRGAVLGPKKRLITLRKSLITQTKRVAHEKINLKWIDTSSKTGHGRFQTTAEKRAFMGKLKRDF 393          
BLAST of CB304600 vs. ExPASy Swiss-Prot
Match: RL3_CAEBR (60S ribosomal protein L3 OS=Caenorhabditis briggsae GN=rpl-3 PE=3 SV=2)

HSP 1 Score: 125.176 bits (313), Expect = 1.597e-28
Identity = 58/92 (63.04%), Postives = 74/92 (80.43%), Query Frame = -2
Query:  216 TEFDRTEKDITPMGGFPHYGVVNEDYLLIKGCCVGPKKRVVTLRQSLLKQTSRLALEGIKLKFIDTSSKFGHGRFQTTQEKAKYYGRLKA*F 491
            TEFD T+K I PMGGFP YG+VN+DY++++G  +GPKKR++TLR+SL+ QT R+A E I LK+IDTSSK GHGRFQTT EK  + G+LK  F
Sbjct:  302 TEFDLTQKTINPMGGFPRYGLVNQDYVMLRGAILGPKKRLITLRKSLITQTKRVAHEKINLKWIDTSSKTGHGRFQTTAEKRAFMGKLKRDF 393          
BLAST of CB304600 vs. ExPASy Swiss-Prot
Match: RL3L_BOVIN (60S ribosomal protein L3-like OS=Bos taurus GN=RPL3L PE=2 SV=3)

HSP 1 Score: 124.79 bits (312), Expect = 2.086e-28
Identity = 58/89 (65.17%), Postives = 70/89 (78.65%), Query Frame = -2
Query:  225 TEFDRTEKDITPMGGFPHYGVVNEDYLLIKGCCVGPKKRVVTLRQSLLKQTSRLALEGIKLKFIDTSSKFGHGRFQTTQEKAKYYGRLK 491
            T +D T+K ITP+GGFPHYG VN D++++KGC  G KKRV+TLR+SLL   SR ALE I+LKFIDT+SKFGHGRFQT QEK  + G  K
Sbjct:  305 TSYDVTDKSITPLGGFPHYGEVNNDFVMLKGCIAGTKKRVITLRKSLLVHHSRQALENIELKFIDTTSKFGHGRFQTAQEKRAFMGPQK 393          
BLAST of CB304600 vs. ExPASy Swiss-Prot
Match: RL3L_HUMAN (60S ribosomal protein L3-like OS=Homo sapiens GN=RPL3L PE=1 SV=3)

HSP 1 Score: 122.479 bits (306), Expect = 1.035e-27
Identity = 57/89 (64.04%), Postives = 69/89 (77.53%), Query Frame = -2
Query:  225 TEFDRTEKDITPMGGFPHYGVVNEDYLLIKGCCVGPKKRVVTLRQSLLKQTSRLALEGIKLKFIDTSSKFGHGRFQTTQEKAKYYGRLK 491
            T +D T K ITP+GGFPHYG VN D++++KGC  G KKRV+TLR+SLL   SR A+E I+LKFIDT+SKFGHGRFQT QEK  + G  K
Sbjct:  305 TSYDVTAKSITPLGGFPHYGEVNNDFVMLKGCIAGTKKRVITLRKSLLVHHSRQAVENIELKFIDTTSKFGHGRFQTAQEKRAFMGPQK 393          
BLAST of CB304600 vs. ExPASy Swiss-Prot
Match: RL3_DICDI (60S ribosomal protein L3 OS=Dictyostelium discoideum GN=rpl3 PE=1 SV=2)

HSP 1 Score: 122.094 bits (305), Expect = 1.352e-27
Identity = 56/90 (62.22%), Postives = 69/90 (76.67%), Query Frame = -2
Query:  222 TEFDRTEKDITPMGGFPHYGVVNEDYLLIKGCCVGPKKRVVTLRQSLLKQTSRLALEGIKLKFIDTSSKFGHGRFQTTQEKAKYYGRLKA 491
            TEFD TEK I PMGGF HYG+V  ++L++KGC  GP+KR +TLR+S+  QT R ALE I LKFIDTSSKFGHG  QT ++K KY+G  K+
Sbjct:  304 TEFDLTEKTINPMGGFAHYGMVKHEFLMLKGCVAGPRKRALTLRKSITTQTGRAALEKITLKFIDTSSKFGHGLHQTAEDKTKYFGVKKS 393          
The following BLAST results are available for this feature:
BLAST of CB304600 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 25
Match NameE-valueIdentityDescription
RL3_ORYSJ1.645e-4188.8960S ribosomal protein L3 OS=Oryza sativa subsp. ja... [more]
RL32_ARATH4.480e-3985.0660S ribosomal protein L3-2 OS=Arabidopsis thaliana... [more]
RL31_ARATH1.882e-3780.6860S ribosomal protein L3-1 OS=Arabidopsis thaliana... [more]
RL3_DROME1.182e-3169.6660S ribosomal protein L3 OS=Drosophila melanogaste... [more]
RL3_TOXCA8.469e-3065.1760S ribosomal protein L3 OS=Toxocara canis GN=RPL3... [more]
RL3_CAEEL1.887e-2964.1360S ribosomal protein L3 OS=Caenorhabditis elegans... [more]
RL3_CAEBR1.597e-2863.0460S ribosomal protein L3 OS=Caenorhabditis briggsa... [more]
RL3L_BOVIN2.086e-2865.1760S ribosomal protein L3-like OS=Bos taurus GN=RPL... [more]
RL3L_HUMAN1.035e-2764.0460S ribosomal protein L3-like OS=Homo sapiens GN=R... [more]
RL3_DICDI1.352e-2762.2260S ribosomal protein L3 OS=Dictyostelium discoide... [more]

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Properties
Property NameValue
Genbank descriptionFLAVEDO0001_IaR_B09 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0001_IaR_B09 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB304600 ID=CB304600; Name=CB304600; organism=Citrus sinensis; type=EST; length=492bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCAAGCCCAAAAATACCGTA
AGATGTACTAACGCGCAAAAAAGAAACCATGCACAAATGAAGTTTCCAAG
AACTGCCAGGGTAGCCATAGCCATATTAATTCAAAATAGAGACTAAAATG
ACCAAAAATCTTAAATGTTCAAAACTACCCTGAAACCAAAGGCAATCTCT
TCTTCAACTTGGCCAAAATCAAGCCTTGAGCCTTCCATAGTACTTGGCCT
TCTCCTGCGTTGTCTGGAACCGACCATGGCCGAACTTGGAGGATGTGTCA
ATGAACTTGAGCTTAATCCCCTCCAATGCAAGCCTAGACGTCTGCTTCAG
TAGGGACTGCCTTAACGTCACAACACGCTTCTTAGGTCCAACACAGCAGC
CCTTGATCAGCAGGTAATCTTCATTGACTACACCATAGTGGGGGAAGCCT
CCCATTGGGGTGATATCCTTCTCCGTCCTGTCAAATTCAGTC
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