CB304616

Overview
NameCB304616
Unique NameCB304616
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length351
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB304616 vs. ExPASy Swiss-Prot
Match: UBC9_PAGMA (SUMO-conjugating enzyme UBC9 OS=Pagrus major GN=ube2i PE=2 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 2.067e-16
Identity = 38/64 (59.38%), Postives = 49/64 (76.56%), Query Frame = -2
Query:  159 VCLSILKEDNGWSPAIPVKQIVVGIQDLLGQPNPADPAQTEGYHLFIQDAAEYKRRVGQQAKQY 350
            VCLSIL+ED  W PAI +KQI++GIQ+LL +PN  DPAQ E Y +F QD  EY++RV  QAK++
Sbjct:   92 VCLSILEEDKDWRPAITIKQILLGIQELLNEPNIQDPAQAEAYTIFCQDRTEYEKRVRAQAKKF 155          
BLAST of CB304616 vs. ExPASy Swiss-Prot
Match: UBC9_SCHPO (SUMO-conjugating enzyme ubc9 OS=Schizosaccharomyces pombe GN=hus5 PE=1 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 4.604e-16
Identity = 38/63 (60.32%), Postives = 48/63 (76.19%), Query Frame = -2
Query:  162 VCLSILKEDNGWSPAIPVKQIVVGIQDLLGQPNPADPAQTEGYHLFIQDAAEYKRRVGQQAKQ 350
            VCLSIL E+ GW PAI +KQI++GIQDLL  PN A PAQTE Y +F +D  EY++RV  QA++
Sbjct:   92 VCLSILNEEEGWKPAITIKQILLGIQDLLDDPNIASPAQTEAYTMFKKDKVEYEKRVRAQARE 154          
BLAST of CB304616 vs. ExPASy Swiss-Prot
Match: UBC9_XENTR (SUMO-conjugating enzyme UBC9 OS=Xenopus tropicalis GN=ube2i PE=2 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 1.750e-15
Identity = 36/64 (56.25%), Postives = 49/64 (76.56%), Query Frame = -2
Query:  159 VCLSILKEDNGWSPAIPVKQIVVGIQDLLGQPNPADPAQTEGYHLFIQDAAEYKRRVGQQAKQY 350
            VCLSIL+ED  W PAI +KQI++GIQ+LL +PN  DPAQ E Y ++ Q+  EY++RV  QAK++
Sbjct:   92 VCLSILEEDKDWRPAITIKQILLGIQELLNEPNIQDPAQAEAYTIYCQNRVEYEKRVRAQAKKF 155          
BLAST of CB304616 vs. ExPASy Swiss-Prot
Match: UBC9_XENLA (SUMO-conjugating enzyme UBC9 OS=Xenopus laevis GN=ube2i PE=1 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 1.750e-15
Identity = 36/64 (56.25%), Postives = 49/64 (76.56%), Query Frame = -2
Query:  159 VCLSILKEDNGWSPAIPVKQIVVGIQDLLGQPNPADPAQTEGYHLFIQDAAEYKRRVGQQAKQY 350
            VCLSIL+ED  W PAI +KQI++GIQ+LL +PN  DPAQ E Y ++ Q+  EY++RV  QAK++
Sbjct:   92 VCLSILEEDKDWRPAITIKQILLGIQELLNEPNIQDPAQAEAYTIYCQNRVEYEKRVRAQAKKF 155          
BLAST of CB304616 vs. ExPASy Swiss-Prot
Match: UBC9_SPETR (SUMO-conjugating enzyme UBC9 OS=Spermophilus tridecemlineatus GN=UBE2I PE=1 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 1.750e-15
Identity = 36/64 (56.25%), Postives = 49/64 (76.56%), Query Frame = -2
Query:  159 VCLSILKEDNGWSPAIPVKQIVVGIQDLLGQPNPADPAQTEGYHLFIQDAAEYKRRVGQQAKQY 350
            VCLSIL+ED  W PAI +KQI++GIQ+LL +PN  DPAQ E Y ++ Q+  EY++RV  QAK++
Sbjct:   92 VCLSILEEDKDWRPAITIKQILLGIQELLNEPNIQDPAQAEAYTIYCQNRVEYEKRVRAQAKKF 155          
BLAST of CB304616 vs. ExPASy Swiss-Prot
Match: UBC9_RAT (SUMO-conjugating enzyme UBC9 OS=Rattus norvegicus GN=Ube2i PE=1 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 1.750e-15
Identity = 36/64 (56.25%), Postives = 49/64 (76.56%), Query Frame = -2
Query:  159 VCLSILKEDNGWSPAIPVKQIVVGIQDLLGQPNPADPAQTEGYHLFIQDAAEYKRRVGQQAKQY 350
            VCLSIL+ED  W PAI +KQI++GIQ+LL +PN  DPAQ E Y ++ Q+  EY++RV  QAK++
Sbjct:   92 VCLSILEEDKDWRPAITIKQILLGIQELLNEPNIQDPAQAEAYTIYCQNRVEYEKRVRAQAKKF 155          
BLAST of CB304616 vs. ExPASy Swiss-Prot
Match: UBC9_MOUSE (SUMO-conjugating enzyme UBC9 OS=Mus musculus GN=Ube2i PE=1 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 1.750e-15
Identity = 36/64 (56.25%), Postives = 49/64 (76.56%), Query Frame = -2
Query:  159 VCLSILKEDNGWSPAIPVKQIVVGIQDLLGQPNPADPAQTEGYHLFIQDAAEYKRRVGQQAKQY 350
            VCLSIL+ED  W PAI +KQI++GIQ+LL +PN  DPAQ E Y ++ Q+  EY++RV  QAK++
Sbjct:   92 VCLSILEEDKDWRPAITIKQILLGIQELLNEPNIQDPAQAEAYTIYCQNRVEYEKRVRAQAKKF 155          
BLAST of CB304616 vs. ExPASy Swiss-Prot
Match: UBC9_HUMAN (SUMO-conjugating enzyme UBC9 OS=Homo sapiens GN=UBE2I PE=1 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 1.750e-15
Identity = 36/64 (56.25%), Postives = 49/64 (76.56%), Query Frame = -2
Query:  159 VCLSILKEDNGWSPAIPVKQIVVGIQDLLGQPNPADPAQTEGYHLFIQDAAEYKRRVGQQAKQY 350
            VCLSIL+ED  W PAI +KQI++GIQ+LL +PN  DPAQ E Y ++ Q+  EY++RV  QAK++
Sbjct:   92 VCLSILEEDKDWRPAITIKQILLGIQELLNEPNIQDPAQAEAYTIYCQNRVEYEKRVRAQAKKF 155          
BLAST of CB304616 vs. ExPASy Swiss-Prot
Match: UBC9_CHICK (SUMO-conjugating enzyme UBC9 OS=Gallus gallus GN=UBE2I PE=2 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 1.750e-15
Identity = 36/64 (56.25%), Postives = 49/64 (76.56%), Query Frame = -2
Query:  159 VCLSILKEDNGWSPAIPVKQIVVGIQDLLGQPNPADPAQTEGYHLFIQDAAEYKRRVGQQAKQY 350
            VCLSIL+ED  W PAI +KQI++GIQ+LL +PN  DPAQ E Y ++ Q+  EY++RV  QAK++
Sbjct:   92 VCLSILEEDKDWRPAITIKQILLGIQELLNEPNIQDPAQAEAYTIYCQNRVEYEKRVRAQAKKF 155          
BLAST of CB304616 vs. ExPASy Swiss-Prot
Match: UBC9B_DANRE (SUMO-conjugating enzyme UBC9-B OS=Danio rerio GN=ube2ib PE=1 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 1.750e-15
Identity = 36/64 (56.25%), Postives = 49/64 (76.56%), Query Frame = -2
Query:  159 VCLSILKEDNGWSPAIPVKQIVVGIQDLLGQPNPADPAQTEGYHLFIQDAAEYKRRVGQQAKQY 350
            VCLSIL+ED  W PAI +KQI++GIQ+LL +PN  DPAQ E Y ++ Q+  EY++RV  QAK++
Sbjct:   92 VCLSILEEDKDWRPAITIKQILLGIQELLNEPNIQDPAQAEAYTIYCQNRVEYEKRVRAQAKKF 155          
The following BLAST results are available for this feature:
BLAST of CB304616 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 15
Match NameE-valueIdentityDescription
UBC9_PAGMA2.067e-1659.38SUMO-conjugating enzyme UBC9 OS=Pagrus major GN=ub... [more]
UBC9_SCHPO4.604e-1660.32SUMO-conjugating enzyme ubc9 OS=Schizosaccharomyce... [more]
UBC9_XENTR1.750e-1556.25SUMO-conjugating enzyme UBC9 OS=Xenopus tropicalis... [more]
UBC9_XENLA1.750e-1556.25SUMO-conjugating enzyme UBC9 OS=Xenopus laevis GN=... [more]
UBC9_SPETR1.750e-1556.25SUMO-conjugating enzyme UBC9 OS=Spermophilus tride... [more]
UBC9_RAT1.750e-1556.25SUMO-conjugating enzyme UBC9 OS=Rattus norvegicus ... [more]
UBC9_MOUSE1.750e-1556.25SUMO-conjugating enzyme UBC9 OS=Mus musculus GN=Ub... [more]
UBC9_HUMAN1.750e-1556.25SUMO-conjugating enzyme UBC9 OS=Homo sapiens GN=UB... [more]
UBC9_CHICK1.750e-1556.25SUMO-conjugating enzyme UBC9 OS=Gallus gallus GN=U... [more]
UBC9B_DANRE1.750e-1556.25SUMO-conjugating enzyme UBC9-B OS=Danio rerio GN=u... [more]

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Properties
Property NameValue
Genbank descriptionFLAVEDO0001_IaR_E02 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0001_IaR_E02 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB304616 ID=CB304616; Name=CB304616; organism=Citrus sinensis; type=EST; length=351bp
TTTTTTTTTTTTTTTTGTTTTTTTTTTTTGGTTACCAATGGTTACTTTAT
TTACAAAGCAAGTTTAGCAATGGCATTTTACAAAAGACAGGTCACCATTA
CCAAGAGTTTAATAAAAGTCCATAAAAAAACCAGAACATAAATTTAAAGG
AGTGCAGGGTATTGCTTGGCTTGCTGCCCAACTCTTCTCTTGTACTCTGC
AGCATCCTGAATGAAGAGATGATAACCTTCTGTTTGTGCCGGATCTGCAG
GATTTGGCTGGCCCAACAAGTCTTGGATACCGACAACAATTTGCTTCACT
GGGATGGCTGGACTCCACCCATTGTCCTCTTTGAGGATTGATAGACAAAC
A
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