CB304631

Overview
NameCB304631
Unique NameCB304631
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length618
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig350 contig Csv1_Contig350:1..618. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB304631 vs. ExPASy Swiss-Prot
Match: GEML5_ARATH (GEM-like protein 5 OS=Arabidopsis thaliana GN=At5g13200 PE=1 SV=1)

HSP 1 Score: 182.57 bits (462), Expect = 1.417e-45
Identity = 80/108 (74.07%), Postives = 100/108 (92.59%), Query Frame = -1
Query:  292 LKKTFACYLSTTTGPVAGTLYLSTARVAFCSDRPLCFTAPSGQEAWSYYKVMIPLANISSVNPVTVKENASDKYMKIVTVEGHEFWFMGFVNFEKATNHLLNSLSEYR 615
            LKKTFACYLSTTTGPVAGT+YLS ARVAFCSDRPL FTAPSGQE+WSYY+V++PLAN+++VNPV VKE   +KY+++ TV+GH+FWFMGFVN+EKAT+HLL S+S+++
Sbjct:  157 LKKTFACYLSTTTGPVAGTVYLSNARVAFCSDRPLYFTAPSGQESWSYYRVVVPLANVATVNPVVVKETPPEKYIQLTTVDGHDFWFMGFVNYEKATHHLLTSVSDFQ 264          
BLAST of CB304631 vs. ExPASy Swiss-Prot
Match: GEML1_ARATH (GEM-like protein 1 OS=Arabidopsis thaliana GN=FIP1 PE=1 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 8.637e-27
Identity = 53/108 (49.07%), Postives = 75/108 (69.44%), Query Frame = -1
Query:  295 KLKKTFACYLSTTTGPVAGTLYLSTARVAFCSDRPLCFTAPSGQEAWSYYKVMIPLANISSVNPVTVKENASDKYMKIVTVEGHEFWFMGFVNFEKATNHLLNSLSEY 618
            KL KT+ACYLST+ GPV G +YLST ++AF SD PL +     Q  WSYYKV++P   + +VNP T + N SDKY+++++++ HEFWFMGFV +E A   L  ++  +
Sbjct:  151 KLLKTYACYLSTSAGPVLGVMYLSTHKLAFSSDNPLSYKEGE-QTLWSYYKVVLPANQLKAVNPSTSRVNTSDKYIQVISIDNHEFWFMGFVTYESAVKSLQEAVQSH 257          
BLAST of CB304631 vs. ExPASy Swiss-Prot
Match: GEM_ARATH (GLABRA2 expression modulator OS=Arabidopsis thaliana GN=GEM PE=1 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 7.312e-26
Identity = 52/105 (49.52%), Postives = 76/105 (72.38%), Query Frame = -1
Query:  304 KLKKTFACYLSTTTGPVAGTLYLSTARVAFCSDRPLCFTAPSGQEAWSYYKVMIPLANISSVNPVTVKENASDKYMKIVTVEGHEFWFMGFVNFEKATNHLLNSL 618
            +L  +FACYLST+ GPV G LY+S+A++A+CSD PL +     Q  WSYYKV+IPL  + +VNP     N ++KY+++++V+ HEFWFMGF+N++ A   L +SL
Sbjct:  188 QLLNSFACYLSTSAGPVMGVLYISSAKLAYCSDNPLSYKN-GDQTEWSYYKVVIPLHQLKAVNPSASIVNPAEKYIQVISVDNHEFWFMGFLNYDGAVTSLQDSL 291          
BLAST of CB304631 vs. ExPASy Swiss-Prot
Match: GEML8_ARATH (Putative GEM-like protein 8 OS=Arabidopsis thaliana GN=At5g23370 PE=3 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 1.991e-23
Identity = 50/106 (47.17%), Postives = 73/106 (68.87%), Query Frame = -1
Query:  301 KLKKTFACYLSTTTGPVAGTLYLSTARVAFCSDRPLCFTAPSGQEAWSYYKVMIPLANISSVNPVTVKENASDKYMKIVTVEGHEFWFMGFVNFEKATNHLLNSLS 618
            KL K + CYLSTT GP+AG L++S+ ++AFCS+R +   +P G+    +YKV IPL  I+ VN        S KY+++VTV+G +FWFMGF++++KA N L  +LS
Sbjct:  109 KLFKAYQCYLSTTAGPIAGLLFISSKKIAFCSERSIKVASPQGELNRVHYKVSIPLCKINGVNQSQNTTKPSQKYLEVVTVDGFDFWFMGFLSYQKAFNCLEQALS 214          
BLAST of CB304631 vs. ExPASy Swiss-Prot
Match: GEML7_ARATH (GEM-like protein 7 OS=Arabidopsis thaliana GN=At5g23360 PE=2 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 4.436e-23
Identity = 49/107 (45.79%), Postives = 74/107 (69.16%), Query Frame = -1
Query:  298 KLKKTFACYLSTTTGPVAGTLYLSTARVAFCSDRPLCFTAPSGQEAWSYYKVMIPLANISSVNPVTVKENASDKYMKIVTVEGHEFWFMGFVNFEKATNHLLNSLSE 618
            KL K + CYLSTT G +AG L++S+ ++AFCS+R +  T+P G     +YKV IPL  I+ VN     +  S +Y+++VTV+ ++FWFMGFV+++KA N L  +L+E
Sbjct:  101 KLFKAYQCYLSTTEGSIAGLLFISSKKIAFCSERSIKVTSPQGDLTRVHYKVSIPLCKINGVNQSQNTKKPSQRYLEVVTVDNYDFWFMGFVSYQKAFNCLEKALNE 207          
BLAST of CB304631 vs. ExPASy Swiss-Prot
Match: GEML6_ARATH (GEM-like protein 6 OS=Arabidopsis thaliana GN=At5g23350 PE=2 SV=2)

HSP 1 Score: 107.071 bits (266), Expect = 7.567e-23
Identity = 49/106 (46.23%), Postives = 73/106 (68.87%), Query Frame = -1
Query:  301 KLKKTFACYLSTTTGPVAGTLYLSTARVAFCSDRPLCFTAPSGQEAWSYYKVMIPLANISSVNPVTVKENASDKYMKIVTVEGHEFWFMGFVNFEKATNHLLNSLS 618
            KL K + CYLSTT GP+AG L++S+ ++AFCS+R +   +P G  +  +YKV IPL  I+ VN     +  S KY++IVT++  +FWFMGFV+++KA N L  +L+
Sbjct:  109 KLFKAYQCYLSTTAGPIAGLLFISSKKIAFCSERSIKVASPQGVLSRVHYKVSIPLCKINGVNQSQNTKKPSQKYLEIVTIDNFDFWFMGFVSYQKAFNCLEKALN 214          
BLAST of CB304631 vs. ExPASy Swiss-Prot
Match: GEML4_ARATH (GEM-like protein 4 OS=Arabidopsis thaliana GN=At5g08350 PE=2 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 7.567e-23
Identity = 50/106 (47.17%), Postives = 72/106 (67.92%), Query Frame = -1
Query:  301 KLKKTFACYLSTTTGPVAGTLYLSTARVAFCSDRPLCFTAPSGQEAWSYYKVMIPLANISSVNPVTVKENASDKYMKIVTVEGHEFWFMGFVNFEKATNHLLNSLS 618
            KL K + CYLSTT GP+AG L++S+ ++AFCS+R +   +P G     +YKV IPL  I  VN     +  S KY+++VTV+G +FWFMGF++++KA N L  +LS
Sbjct:  108 KLFKMYQCYLSTTAGPIAGLLFISSKKMAFCSERSIKVDSPQGDIIRVHYKVSIPLCKIDRVNQSQNTKKPSQKYLEVVTVDGFDFWFMGFLSYQKAFNCLEKALS 213          
BLAST of CB304631 vs. ExPASy Swiss-Prot
Match: GEML3_ARATH (Putative GEM-like protein 3 OS=Arabidopsis thaliana GN=At4g40100 PE=3 SV=2)

HSP 1 Score: 98.2117 bits (243), Expect = 3.515e-20
Identity = 47/105 (44.76%), Postives = 69/105 (65.71%), Query Frame = -1
Query:  304 KLKKTFACYLSTTTGPVAGTLYLSTARVAFCSDRPLCFTAPSGQEAWSYYKVMIPLANISSVNPVTVKENASDKYMKIVTVEGHEFWFMGFVNFEKATNHLLNSL 618
            +L+ +FACYLST+ GPV G LY+STA++A+CSD  L               V+IPL  + SVNP     N ++KY+++++V+ HEFWFMGF+N+E A   L ++L
Sbjct:  141 QLQNSFACYLSTSAGPVMGVLYVSTAKLAYCSDTSL---------------VVIPLHQLKSVNPSISTVNPAEKYIQVISVDDHEFWFMGFLNYEGAVTSLQDTL 230          
BLAST of CB304631 vs. ExPASy Swiss-Prot
Match: GEML2_ARATH (GEM-like protein 2 OS=Arabidopsis thaliana GN=At4g01600 PE=2 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 2.519e-18
Identity = 47/110 (42.73%), Postives = 69/110 (62.73%), Query Frame = -1
Query:  292 KLKKTFACYLSTTTGPVAGTLYLSTARVAFCSDRPLCF-TAPSGQEAWSYYKVMIPLANISSVNPVTVKENASDKYMKIVTVEGHEFWFMGFVNFEKATNHLLNSLSEYR 618
            KL  +F CY+STT+GPV G +Y+S  R+AFCSD  +   ++  G    +YYKV++    ISS++  T     S++Y+ +VT +G EFWFMGFV++  A N L  +L   R
Sbjct:  119 KLLDSFVCYISTTSGPVTGVIYISNRRIAFCSDYAIRLPSSAGGNGVAAYYKVVMEWEKISSISSSTNVLKPSERYVHMVTRDGFEFWFMGFVSYIDAFNCLNKALLNSR 228          
The following BLAST results are available for this feature:
BLAST of CB304631 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 9
Match NameE-valueIdentityDescription
GEML5_ARATH1.417e-4574.07GEM-like protein 5 OS=Arabidopsis thaliana GN=At5g... [more]
GEML1_ARATH8.637e-2749.07GEM-like protein 1 OS=Arabidopsis thaliana GN=FIP1... [more]
GEM_ARATH7.312e-2649.52GLABRA2 expression modulator OS=Arabidopsis thalia... [more]
GEML8_ARATH1.991e-2347.17Putative GEM-like protein 8 OS=Arabidopsis thalian... [more]
GEML7_ARATH4.436e-2345.79GEM-like protein 7 OS=Arabidopsis thaliana GN=At5g... [more]
GEML6_ARATH7.567e-2346.23GEM-like protein 6 OS=Arabidopsis thaliana GN=At5g... [more]
GEML4_ARATH7.567e-2347.17GEM-like protein 4 OS=Arabidopsis thaliana GN=At5g... [more]
GEML3_ARATH3.515e-2044.76Putative GEM-like protein 3 OS=Arabidopsis thalian... [more]
GEML2_ARATH2.519e-1842.73GEM-like protein 2 OS=Arabidopsis thaliana GN=At4g... [more]
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Properties
Property NameValue
Genbank descriptionFLAVEDO0001_IaR_F08 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0001_IaR_F08 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB304631 ID=CB304631; Name=CB304631; organism=Citrus sinensis; type=EST; length=618bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTGCTCGGCCGTATGCGTAAGCC
GATTACAAGTGAATTGAATTTAAAAATTTGATCTTCTACACTTGAATATT
GAAACACACAAACGACCTGTGTTCAGATCTTTACACACAAAATACCAAAT
CAATTACTGCTTTACAACCAAACCAACCTATAGATTCTCAAACTGAAAGA
AACAACCAAAAGCAGAGCATACGAAAATTTTGACTCCAACAACCATTTTA
CACAGCTACTGGTCGCCCACTCGCCCTGCACTTCCAGTTGCTCTGTATTC
TGACAAACTGTTCAACAAGTGGTTCGTTGCTTTCTCGAAATTGACAAAGC
CCATGAACCAAAATTCATGTCCCTCCACAGTTACAATCTTCATGTACTTG
TCTGATGCATTTTCTTTTACTGTCACTGGATTGACTGAGCTTATATTCGC
CAAAGGTATCATAACCTTGTAGTAGCTCCAAGCTTCCTGCCCAGATGGAG
CAGTAAAACACAAGGGACGATCACTGCAGAAAGCCACACGGGCTGTTGAT
AAATAGAGTGTTCCAGCAACAGGACCAGTTGTTGTAGAAAGATAACACGC
AAAGGTCTTCTTTAGCTT
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