CB304656

Overview
NameCB304656
Unique NameCB304656
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length582
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB304656 vs. ExPASy Swiss-Prot
Match: RL30_EUPES (60S ribosomal protein L30 OS=Euphorbia esula GN=RPL30 PE=3 SV=1)

HSP 1 Score: 142.51 bits (358), Expect = 1.424e-33
Identity = 65/70 (92.86%), Postives = 68/70 (97.14%), Query Frame = -3
Query:  371 GKLIILSNNCPPLRKSEIEYYAMLAKVGVHHYNGNNVDLGTACGKYFRVSCLSIIDPGDSDIIKSLPGDH 580
            GKLII++NNCPPLRKSEIEYYAMLAKVGVHHYNGNNVDLGTACGKYFRV CLSIID GDSDIIKS+PGDH
Sbjct:   43 GKLIIIANNCPPLRKSEIEYYAMLAKVGVHHYNGNNVDLGTACGKYFRVCCLSIIDAGDSDIIKSIPGDH 112          
BLAST of CB304656 vs. ExPASy Swiss-Prot
Match: RL302_ARATH (60S ribosomal protein L30-2 OS=Arabidopsis thaliana GN=RPL30B PE=2 SV=1)

HSP 1 Score: 140.969 bits (354), Expect = 4.142e-33
Identity = 63/69 (91.30%), Postives = 68/69 (98.55%), Query Frame = -3
Query:  374 GKLIILSNNCPPLRKSEIEYYAMLAKVGVHHYNGNNVDLGTACGKYFRVSCLSIIDPGDSDIIKSLPGD 580
            GKLI++S NCPPLR+SEIEYYAMLAKVGVHHYNGNNVDLGTACGKYFRVSCLSI+DPGDSDIIKS+PGD
Sbjct:   43 GKLILISTNCPPLRRSEIEYYAMLAKVGVHHYNGNNVDLGTACGKYFRVSCLSIVDPGDSDIIKSIPGD 111          
BLAST of CB304656 vs. ExPASy Swiss-Prot
Match: RL30_LUPLU (60S ribosomal protein L30 OS=Lupinus luteus GN=RPL30 PE=3 SV=1)

HSP 1 Score: 140.584 bits (353), Expect = 5.410e-33
Identity = 63/69 (91.30%), Postives = 68/69 (98.55%), Query Frame = -3
Query:  374 GKLIILSNNCPPLRKSEIEYYAMLAKVGVHHYNGNNVDLGTACGKYFRVSCLSIIDPGDSDIIKSLPGD 580
            GKLII++NNCPPLRKSEIEYYAMLAKVGVHHYNGNNVDLGTACGKY+RV CLSI+DPGDSDIIK+LPGD
Sbjct:   43 GKLIIIANNCPPLRKSEIEYYAMLAKVGVHHYNGNNVDLGTACGKYYRVCCLSIVDPGDSDIIKTLPGD 111          
BLAST of CB304656 vs. ExPASy Swiss-Prot
Match: RL301_ARATH (Putative 60S ribosomal protein L30-1 OS=Arabidopsis thaliana GN=RPL30A PE=3 SV=1)

HSP 1 Score: 139.043 bits (349), Expect = 1.574e-32
Identity = 63/69 (91.30%), Postives = 68/69 (98.55%), Query Frame = -3
Query:  374 GKLIILSNNCPPLRKSEIEYYAMLAKVGVHHYNGNNVDLGTACGKYFRVSCLSIIDPGDSDIIKSLPGD 580
            GKLI++S+NCPPLR+SEIEYYAMLAKVGVHHYN NNVDLGTACGKYFRVSCLSI+DPGDSDIIKSLPGD
Sbjct:   43 GKLILISSNCPPLRRSEIEYYAMLAKVGVHHYNRNNVDLGTACGKYFRVSCLSIVDPGDSDIIKSLPGD 111          
BLAST of CB304656 vs. ExPASy Swiss-Prot
Match: RL303_ARATH (60S ribosomal protein L30-3 OS=Arabidopsis thaliana GN=RPL30C PE=2 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 3.506e-32
Identity = 62/69 (89.86%), Postives = 68/69 (98.55%), Query Frame = -3
Query:  374 GKLIILSNNCPPLRKSEIEYYAMLAKVGVHHYNGNNVDLGTACGKYFRVSCLSIIDPGDSDIIKSLPGD 580
            GKLI++S+NCPPLR+SEIEYYAMLAKVGVH YNGNNVDLGTACGKYFRVSCLSI+DPGDSDIIK+LPGD
Sbjct:   43 GKLILISSNCPPLRRSEIEYYAMLAKVGVHRYNGNNVDLGTACGKYFRVSCLSIVDPGDSDIIKTLPGD 111          
BLAST of CB304656 vs. ExPASy Swiss-Prot
Match: RL30_MAIZE (60S ribosomal protein L30 OS=Zea mays GN=RPL30 PE=3 SV=1)

HSP 1 Score: 129.413 bits (324), Expect = 1.247e-29
Identity = 58/68 (85.29%), Postives = 65/68 (95.59%), Query Frame = -3
Query:  374 KLIILSNNCPPLRKSEIEYYAMLAKVGVHHYNGNNVDLGTACGKYFRVSCLSIIDPGDSDIIKSLPGD 577
            KL+I++NNCPPLRKSEIEYYAMLAKV VHH++GNNVDLGTACGKYFRV CLSIIDPGDSDIIK+ PG+
Sbjct:   44 KLVIIANNCPPLRKSEIEYYAMLAKVTVHHFHGNNVDLGTACGKYFRVCCLSIIDPGDSDIIKTTPGE 111          
BLAST of CB304656 vs. ExPASy Swiss-Prot
Match: RL30_ORYSJ (60S ribosomal protein L30 OS=Oryza sativa subsp. japonica GN=RPL30 PE=3 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 2.352e-28
Identity = 57/64 (89.06%), Postives = 62/64 (96.88%), Query Frame = -3
Query:  386 KLIILSNNCPPLRKSEIEYYAMLAKVGVHHYNGNNVDLGTACGKYFRVSCLSIIDPGDSDIIKS 577
            KL+I+SNNCPPLRKSEIEYYAMLAKV VHH++GNNVDLGTACGKYFRV CLSIIDPGDSDIIK+
Sbjct:   44 KLVIISNNCPPLRKSEIEYYAMLAKVTVHHFHGNNVDLGTACGKYFRVCCLSIIDPGDSDIIKT 107          
BLAST of CB304656 vs. ExPASy Swiss-Prot
Match: RL30_WHEAT (60S ribosomal protein L30 OS=Triticum aestivum PE=1 SV=2)

HSP 1 Score: 120.553 bits (301), Expect = 5.793e-27
Identity = 54/65 (83.08%), Postives = 61/65 (93.85%), Query Frame = -3
Query:  386 GKLIILSNNCPPLRKSEIEYYAMLAKVGVHHYNGNNVDLGTACGKYFRVSCLSIIDPGDSDIIKS 580
            GKLIIL+NNCPPLRKSEIE YAMLAK+ VHH++GNNVDLGTACGKY+RV CLSI+DPGDSDII +
Sbjct:   43 GKLIILANNCPPLRKSEIETYAMLAKISVHHFHGNNVDLGTACGKYYRVCCLSILDPGDSDIIST 107          
BLAST of CB304656 vs. ExPASy Swiss-Prot
Match: RL30_RAT (60S ribosomal protein L30 OS=Rattus norvegicus GN=Rpl30 PE=3 SV=2)

HSP 1 Score: 120.168 bits (300), Expect = 7.566e-27
Identity = 53/66 (80.30%), Postives = 62/66 (93.94%), Query Frame = -3
Query:  380 KLIILSNNCPPLRKSEIEYYAMLAKVGVHHYNGNNVDLGTACGKYFRVSCLSIIDPGDSDIIKSLP 577
            KL+IL+NNCP LRKSEIEYYAMLAK GVHHY+GNN++LGTACGKY+RV  L+IIDPGDSDII+S+P
Sbjct:   44 KLVILANNCPALRKSEIEYYAMLAKTGVHHYSGNNIELGTACGKYYRVCTLAIIDPGDSDIIRSMP 109          
BLAST of CB304656 vs. ExPASy Swiss-Prot
Match: RL30_OPHHA (60S ribosomal protein L30 OS=Ophiophagus hannah GN=RPL30 PE=3 SV=2)

HSP 1 Score: 120.168 bits (300), Expect = 7.566e-27
Identity = 53/66 (80.30%), Postives = 62/66 (93.94%), Query Frame = -3
Query:  380 KLIILSNNCPPLRKSEIEYYAMLAKVGVHHYNGNNVDLGTACGKYFRVSCLSIIDPGDSDIIKSLP 577
            KL+IL+NNCP LRKSEIEYYAMLAK GVHHY+GNN++LGTACGKY+RV  L+IIDPGDSDII+S+P
Sbjct:   44 KLVILANNCPALRKSEIEYYAMLAKTGVHHYSGNNIELGTACGKYYRVCTLAIIDPGDSDIIRSMP 109          
The following BLAST results are available for this feature:
BLAST of CB304656 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 30
Match NameE-valueIdentityDescription
RL30_EUPES1.424e-3392.8660S ribosomal protein L30 OS=Euphorbia esula GN=RP... [more]
RL302_ARATH4.142e-3391.3060S ribosomal protein L30-2 OS=Arabidopsis thalian... [more]
RL30_LUPLU5.410e-3391.3060S ribosomal protein L30 OS=Lupinus luteus GN=RPL... [more]
RL301_ARATH1.574e-3291.30Putative 60S ribosomal protein L30-1 OS=Arabidopsi... [more]
RL303_ARATH3.506e-3289.8660S ribosomal protein L30-3 OS=Arabidopsis thalian... [more]
RL30_MAIZE1.247e-2985.2960S ribosomal protein L30 OS=Zea mays GN=RPL30 PE=... [more]
RL30_ORYSJ2.352e-2889.0660S ribosomal protein L30 OS=Oryza sativa subsp. j... [more]
RL30_WHEAT5.793e-2783.0860S ribosomal protein L30 OS=Triticum aestivum PE=... [more]
RL30_RAT7.566e-2780.3060S ribosomal protein L30 OS=Rattus norvegicus GN=... [more]
RL30_OPHHA7.566e-2780.3060S ribosomal protein L30 OS=Ophiophagus hannah GN... [more]

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Properties
Property NameValue
Genbank descriptionFLAVEDO0002_IIIaR_A08 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0002_IIIaR_A08 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB304656 ID=CB304656; Name=CB304656; organism=Citrus sinensis; type=EST; length=582bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGGCCCAATACAGTAATCATC
ATCAATTTGTAAAATCTACAAATGAGGGTCAAACTCTTTACTAAAAAAAA
AGTCAATCCAAAAGCTAGATTCTAACAATGTTCTAAGTTCATAAAACTTA
AAACTCGAGTCCAACGAGAAAACAAGACATAAGCAAAGGTGAATTGATCC
AAATTGCAAAATTGAAAACATACAAAATATCCAGCATGACATTCAAAATT
GGACTATATAAGAAACTGCATCTGAAGGATGTTCAAAGGAAATTTTGAAT
TGAGAAACAGCATTCTGCAACTAAACAACCTGATCACTAAGATGCAGGTT
TTAACTCTGAATCAGGCTTAGTGGTCTCCTGGAAGTGACTTGATGATATC
AGAATCACCTGGATCAATAATGCTCAAGCAAGACACACGGAAGTACTTTC
CGCATGCTGTTCCCAAATCGACATTGTTTCCATTATAGTGGTGTACACCA
ACTTTAGCAAGCATAGCATAGTACTCAATCTCTGATTTTCTCAACGGTGG
GCAATTATTTGACAAAATAATCAACTTTCCCT
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