CB304662

Overview
NameCB304662
Unique NameCB304662
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length551
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CB304662_ssr188 microsatellite CB304662_ssr188:188..199. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig2668 contig Csv1_Contig2668:267..817. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB304662 vs. ExPASy Swiss-Prot
Match: NLTP_HELAN (Non-specific lipid-transfer protein OS=Helianthus annuus PE=3 SV=1)

HSP 1 Score: 140.584 bits (353), Expect = 4.836e-33
Identity = 65/100 (65.00%), Postives = 80/100 (80.00%), Query Frame = -1
Query:  252 VTAPVTNAITCGQVTGSLAPCIAFLRTGGRFPPPPCCNGVRSLNGAARTSPDRQAACNCLKQAHRSIPGINANVAAGLPRQCGVSIPYKISPNTDCSRVR 551
            V AP T A++CGQV+ SLAPCI++L  GG  PP  CC+GV+SLN AA+T+PDRQAAC CLK A+ SI G+NA  AA  P +CGVSIPYKISP+TDCS+V+
Sbjct:   18 VGAPYTEALSCGQVSSSLAPCISYLTKGGAVPPA-CCSGVKSLNSAAKTTPDRQAACGCLKSAYNSISGVNAGNAASFPGKCGVSIPYKISPSTDCSKVQ 116          
BLAST of CB304662 vs. ExPASy Swiss-Prot
Match: NLTP1_PRUDU (Non-specific lipid-transfer protein 1 OS=Prunus dulcis PE=3 SV=1)

HSP 1 Score: 139.813 bits (351), Expect = 8.249e-33
Identity = 61/100 (61.00%), Postives = 80/100 (80.00%), Query Frame = -1
Query:  252 VTAPVTNAITCGQVTGSLAPCIAFLRTGGRFPPPPCCNGVRSLNGAARTSPDRQAACNCLKQAHRSIPGINANVAAGLPRQCGVSIPYKISPNTDCSRVR 551
            V+ P+  AITCGQV+ +LAPCI ++R GG  PP  CCNG+R++N  ART+PDRQAACNCLKQ   S+PG+N N AA LP +CGV+IPY+ISP+T+C+ V+
Sbjct:   19 VSVPIAQAITCGQVSSNLAPCIPYVRGGGAVPPA-CCNGIRNVNNLARTTPDRQAACNCLKQLSASVPGVNPNNAAALPGKCGVNIPYQISPSTNCANVK 117          
BLAST of CB304662 vs. ExPASy Swiss-Prot
Match: NLTP_PRUAV (Non-specific lipid-transfer protein OS=Prunus avium PE=1 SV=1)

HSP 1 Score: 138.272 bits (347), Expect = 2.400e-32
Identity = 59/100 (59.00%), Postives = 80/100 (80.00%), Query Frame = -1
Query:  252 VTAPVTNAITCGQVTGSLAPCIAFLRTGGRFPPPPCCNGVRSLNGAARTSPDRQAACNCLKQAHRSIPGINANVAAGLPRQCGVSIPYKISPNTDCSRVR 551
            V+ P+  A+TCGQV+ +LAPCIA++R GG  PP  CCNG+R++N  A+T+ DRQ ACNCLKQ   S+PG+NAN AA LP +CGV++PYKISP+T+C+ V+
Sbjct:   19 VSVPIAQALTCGQVSSNLAPCIAYVRGGGAVPPA-CCNGIRNINNLAKTTADRQTACNCLKQLSASVPGVNANNAAALPGKCGVNVPYKISPSTNCATVK 117          
BLAST of CB304662 vs. ExPASy Swiss-Prot
Match: LTP1_MORNI (Non-specific lipid-transfer protein 1 OS=Morus nigra PE=1 SV=1)

HSP 1 Score: 136.346 bits (342), Expect = 9.120e-32
Identity = 64/92 (69.57%), Postives = 74/92 (80.43%), Query Frame = -1
Query:  252 ITCGQVTGSLAPCIAFLRTGGRFPPPPCCNGVRSLNGAARTSPDRQAACNCLKQAHRSIPGINANVAAGLPRQCGVSIPYKISPNTDCSRVR 527
            ITCGQV+ SLAPCI +LR GG   P  CCNGVRSLN AA+T+ DRQAACNCLK A  SI G+N N+AAGLP +CGVS+PYKISP+TDC  V+
Sbjct:    1 ITCGQVSSSLAPCINYLRAGG-VVPANCCNGVRSLNNAAKTTADRQAACNCLKSAFNSIKGLNLNLAAGLPGKCGVSVPYKISPSTDCKSVK 91          
BLAST of CB304662 vs. ExPASy Swiss-Prot
Match: NLTP_MALDO (Non-specific lipid-transfer protein OS=Malus domestica GN=MALD3 PE=1 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 1.008e-30
Identity = 60/96 (62.50%), Postives = 76/96 (79.17%), Query Frame = -1
Query:  252 VTNAITCGQVTGSLAPCIAFLRTGGRFPPPPCCNGVRSLNGAARTSPDRQAACNCLKQAHRSIPGINANVAAGLPRQCGVSIPYKISPNTDCSRVR 539
            V +AITCGQVT SLAPCI ++R+GG  PP  CCNG+R++NG ART+ DRQ ACNCLK    SI G+N N AAGLP +CGV++PYKIS +T+C+ V+
Sbjct:   21 VAHAITCGQVTSSLAPCIGYVRSGGAVPPA-CCNGIRTINGLARTTADRQTACNCLKNLAGSISGVNPNNAAGLPGKCGVNVPYKISTSTNCATVK 115          
BLAST of CB304662 vs. ExPASy Swiss-Prot
Match: NLTP1_PRUPE (Non-specific lipid-transfer protein 1 OS=Prunus persica PE=1 SV=1)

HSP 1 Score: 129.798 bits (325), Expect = 8.536e-30
Identity = 58/92 (63.04%), Postives = 73/92 (79.35%), Query Frame = -1
Query:  252 ITCGQVTGSLAPCIAFLRTGGRFPPPPCCNGVRSLNGAARTSPDRQAACNCLKQAHRSIPGINANVAAGLPRQCGVSIPYKISPNTDCSRVR 527
            ITCGQV+ +LAPCI ++R GG  PP  CCNG+R++N  ART+PDRQAACNCLKQ   S+PG+N N AA LP +CGV IPYKIS +T+C+ V+
Sbjct:    1 ITCGQVSSALAPCIPYVRGGGAVPPA-CCNGIRNVNNLARTTPDRQAACNCLKQLSASVPGVNPNNAAALPGKCGVHIPYKISASTNCATVK 91          
BLAST of CB304662 vs. ExPASy Swiss-Prot
Match: NLTP1_PRUAR (Non-specific lipid-transfer protein 1 OS=Prunus armeniaca PE=1 SV=2)

HSP 1 Score: 125.946 bits (315), Expect = 1.233e-28
Identity = 57/92 (61.96%), Postives = 72/92 (78.26%), Query Frame = -1
Query:  252 ITCGQVTGSLAPCIAFLRTGGRFPPPPCCNGVRSLNGAARTSPDRQAACNCLKQAHRSIPGINANVAAGLPRQCGVSIPYKISPNTDCSRVR 527
            ITCGQV+ SLAPCI ++R GG  PP  CCNG+R++N  ART+PDR+ ACNCLKQ   SI G+N N AA LP +CGV+IPYKIS +T+C+ V+
Sbjct:    1 ITCGQVSSSLAPCIGYVRGGGAVPPA-CCNGIRNVNNLARTTPDRRTACNCLKQLSGSISGVNPNNAAALPGKCGVNIPYKISASTNCATVK 91          
BLAST of CB304662 vs. ExPASy Swiss-Prot
Match: NLTP1_TOBAC (Non-specific lipid-transfer protein 1 OS=Nicotiana tabacum GN=LTP1 PE=1 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 2.103e-28
Identity = 61/100 (61.00%), Postives = 73/100 (73.00%), Query Frame = -1
Query:  252 VTAPVTNAITCGQVTGSLAPCIAFLRTGGRFPPPPCCNGVRSLNGAARTSPDRQAACNCLKQAHRSIPGINANVAAGLPRQCGVSIPYKISPNTDCSRVR 551
            V AP   AITCGQVT +LAPC+A+LR  G  P   CC GV++L  +ART+ DRQ AC CLK A  +I GIN   AAGLP  CGV+IPYKISP+TDCS+V+
Sbjct:   17 VAAPCAEAITCGQVTSNLAPCLAYLRNTG--PLGRCCGGVKALVNSARTTEDRQIACTCLKSAAGAISGINLGKAAGLPSTCGVNIPYKISPSTDCSKVQ 114          
BLAST of CB304662 vs. ExPASy Swiss-Prot
Match: NLTP_DAUCA (Non-specific lipid-transfer protein OS=Daucus carota GN=EP2 PE=2 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 3.586e-28
Identity = 59/100 (59.00%), Postives = 73/100 (73.00%), Query Frame = -1
Query:  255 TAPVTNAI-TCGQVTGSLAPCIAFLRTGGRFPPP-PCCNGVRSLNGAARTSPDRQAACNCLKQAHRSIPGINANVAAGLPRQCGVSIPYKISPNTDCSRV 548
            T P   A+ TCGQVTG+LAPC+ +LR+    P P  CCN VR LN AART+ D++ AC CLKQ   ++ G+N N AAGLP +CGV+IPYKISP TDC+RV
Sbjct:   20 TTPNAEAVLTCGQVTGALAPCLGYLRSQVNVPVPLTCCNVVRGLNNAARTTLDKRTACGCLKQTANAVTGLNLNAAAGLPARCGVNIPYKISPTTDCNRV 119          
BLAST of CB304662 vs. ExPASy Swiss-Prot
Match: NLTP1_PRUDO (Non-specific lipid-transfer protein 1 OS=Prunus domestica PE=1 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 4.684e-28
Identity = 55/92 (59.78%), Postives = 73/92 (79.35%), Query Frame = -1
Query:  252 ITCGQVTGSLAPCIAFLRTGGRFPPPPCCNGVRSLNGAARTSPDRQAACNCLKQAHRSIPGINANVAAGLPRQCGVSIPYKISPNTDCSRVR 527
            ITCGQV+ +LAPCI +++ GG  PP  CCNG+R++N  ART+ DR+AACNCLKQ   SIPG+N N AA LP +CGV++PYKIS +T+C+ V+
Sbjct:    1 ITCGQVSSNLAPCINYVKGGGAVPPA-CCNGIRNVNNLARTTADRRAACNCLKQLSGSIPGVNPNNAAALPGKCGVNVPYKISASTNCATVK 91          
The following BLAST results are available for this feature:
BLAST of CB304662 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 80
Match NameE-valueIdentityDescription
NLTP_HELAN4.836e-3365.00Non-specific lipid-transfer protein OS=Helianthus ... [more]
NLTP1_PRUDU8.249e-3361.00Non-specific lipid-transfer protein 1 OS=Prunus du... [more]
NLTP_PRUAV2.400e-3259.00Non-specific lipid-transfer protein OS=Prunus aviu... [more]
LTP1_MORNI9.120e-3269.57Non-specific lipid-transfer protein 1 OS=Morus nig... [more]
NLTP_MALDO1.008e-3062.50Non-specific lipid-transfer protein OS=Malus domes... [more]
NLTP1_PRUPE8.536e-3063.04Non-specific lipid-transfer protein 1 OS=Prunus pe... [more]
NLTP1_PRUAR1.233e-2861.96Non-specific lipid-transfer protein 1 OS=Prunus ar... [more]
NLTP1_TOBAC2.103e-2861.00Non-specific lipid-transfer protein 1 OS=Nicotiana... [more]
NLTP_DAUCA3.586e-2859.00Non-specific lipid-transfer protein OS=Daucus caro... [more]
NLTP1_PRUDO4.684e-2859.78Non-specific lipid-transfer protein 1 OS=Prunus do... [more]

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Properties
Property NameValue
Genbank descriptionFLAVEDO0002_IIIaR_B04 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0002_IIIaR_B04 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB304662 ID=CB304662; Name=CB304662; organism=Citrus sinensis; type=EST; length=551bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGGGATAATACCACAAAATAA
CTAGAATTAATCACTCAAAACACAGATCACGTTTACATATTTAATATGAT
ATTAAAAGCAAAGATACAAACATGACATGAGAGTGAGACTCACACAAGTG
GAGACTCGCTCGGACAAAGAAATTAACATATATATTCTTTATTTATTTAT
TCTTCTCAGTCAATCATACTTGGAAAGTCACAGAGCTCAAACTCAACTTC
ACCTGACCCTAGAGCAGTCAGTGTTGGGGCTGATCTTGTAAGGAATGCTG
ACTCCACATTGACGAGGAAGGCCAGCGGCAACATTAGCGTTGATGCCGGG
GATTGATCGGTGAGCTTGCTTCAAGCAGTTGCATGCAGCTTGGCGGTCAG
GGGAGGTTCTGGCGGCGCCGTTGAGAGACCTGACGCCGTTACAGCATGGG
GGTGGAGGAAAACGCCCTCCAGTTCTCAAGAAAGCGATGCATGGAGCCAA
GGAGCCTGTCACCTGCCCACATGTTATGGCATTAGTCACTGGGGCAGTCA
C
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